47 decreased-coverage genes were found for selected organism/s



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Locus tag

Gene type

Replicon accession

From

To

Strand

Gene Length

Product

Protein accession

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Organism name

Kingdom

Coverage Plot

PanDaTox homologs

Experimental validation
Tfu_0018  CDS  NC_007333  24941  25561  621  hypothetical protein  YP_288081  decreased coverage  2.27051e-08  n/a    Thermobifida fusca YX  Bacteria 
 
 
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Tfu_0226  CDS  NC_007333  254958  256244  1287  threonine synthase  YP_288287  decreased coverage  0.00204535  n/a    Thermobifida fusca YX  Bacteria 
 
 
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Tfu_0349  CDS  NC_007333  391372  392184  813  putative monovalent cation/H+ antiporter subunit C  YP_288410  decreased coverage  0.00345986  n/a    Thermobifida fusca YX  Bacteria 
 
 
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Tfu_0415  CDS  NC_007333  467669  468637  969  ribose-phosphate pyrophosphokinase  YP_288476  decreased coverage  0.00469729  n/a    Thermobifida fusca YX  Bacteria 
 
 
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Tfu_0433  CDS  NC_007333  489647  491275  1629  delta-1-pyrroline-5-carboxylate dehydrogenase 1  YP_288494  decreased coverage  0.00636325  n/a    Thermobifida fusca YX  Bacteria 
 
 
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Tfu_0506  CDS  NC_007333  572345  573418  1074  hypothetical protein  YP_288567  decreased coverage  0.00681957  n/a    Thermobifida fusca YX  Bacteria 
 
 
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Tfu_0553  CDS  NC_007333  628267  629928  1662  hypothetical protein  YP_288614  decreased coverage  0.000755623  n/a    Thermobifida fusca YX  Bacteria 
 
 
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Tfu_0731  CDS  NC_007333  860663  861919  1257  helix-hairpin-helix DNA-binding motif-containing protein  YP_288792  decreased coverage  0.00340964  n/a    Thermobifida fusca YX  Bacteria 
 
 
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Tfu_0920  CDS  NC_007333  1082098  1082547  450  AsnC family transcriptional regulator  YP_288981  decreased coverage  0.000737241  n/a    Thermobifida fusca YX  Bacteria 
 
 
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Tfu_0948  CDS  NC_007333  1116173  1117798  1626  propionyl-CoA carboxylase  YP_289009  decreased coverage  0.00939936  n/a    Thermobifida fusca YX  Bacteria 
 
 
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Tfu_0989  CDS  NC_007333  1161596  1161886  291  hypothetical protein  YP_289050  decreased coverage  0.00372101  n/a    Thermobifida fusca YX  Bacteria 
 
 
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Tfu_0994  CDS  NC_007333  1166577  1167956  1380  dihydrolipoamide dehydrogenase  YP_289055  decreased coverage  0.000667663  n/a    Thermobifida fusca YX  Bacteria 
 
 
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Tfu_1003  CDS  NC_007333  1179574  1180044  471  hypothetical protein  YP_289064  decreased coverage  0.000913134  n/a    Thermobifida fusca YX  Bacteria 
 
 
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Tfu_1191  CDS  NC_007333  1389156  1390613  1458  30S ribosomal protein S1  YP_289252  decreased coverage  0.00406916  n/a    Thermobifida fusca YX  Bacteria 
 
 
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Tfu_1411  CDS  NC_007333  1634379  1636040  1662  2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase  YP_289472  decreased coverage  0.00764162  n/a    Thermobifida fusca YX  Bacteria 
 
 
-
 
Tfu_1414  CDS  NC_007333  1638598  1640220  1623  FenI protein  YP_289475  decreased coverage  0.0039371  n/a    Thermobifida fusca YX  Bacteria 
 
 
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Tfu_1422  CDS  NC_007333  1647128  1648054  927  LysR family transcriptional regulator  YP_289483  decreased coverage  0.00195938  n/a    Thermobifida fusca YX  Bacteria 
 
 
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Tfu_1446  CDS  NC_007333  1674200  1675198  999  putative transcriptional regulator  YP_289507  decreased coverage  0.00684408  n/a    Thermobifida fusca YX  Bacteria 
 
 
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Tfu_1458  CDS  NC_007333  1684503  1685975  1473  hypothetical protein  YP_289519  decreased coverage  0.0011946  n/a    Thermobifida fusca YX  Bacteria 
 
 
-
 
Tfu_1459  CDS  NC_007333  1685972  1687066  1095  hypothetical protein  YP_289520  decreased coverage  0.00281125  n/a    Thermobifida fusca YX  Bacteria 
 
 
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Tfu_1471  CDS  NC_007333  1699811  1701283  1473  betaine-aldehyde dehydrogenase  YP_289530  decreased coverage  0.00283478  n/a    Thermobifida fusca YX  Bacteria 
 
 
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Tfu_1482  CDS  NC_007333  1712690  1713286  597  hypothetical protein  YP_289541  decreased coverage  0.000942225  n/a    Thermobifida fusca YX  Bacteria 
 
 
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Tfu_1507  CDS  NC_007333  1739217  1739999  783  methylated-DNA-(protein)-cysteine S-methyltransferase  YP_289566  decreased coverage  1.29877e-05  n/a    Thermobifida fusca YX  Bacteria 
 
 
-
 
Tfu_1525  CDS  NC_007333  1756274  1756813  540  hypothetical protein  YP_289584  decreased coverage  0.000589307  n/a    Thermobifida fusca YX  Bacteria 
 
 
-
 
Tfu_1558  CDS  NC_007333  1795269  1796465  1197  hypothetical protein  YP_289617  decreased coverage  0.00165384  n/a    Thermobifida fusca YX  Bacteria 
 
 
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Tfu_1565  CDS  NC_007333  1802695  1803966  1272  hypothetical protein  YP_289624  decreased coverage  1.03303e-07  n/a    Thermobifida fusca YX  Bacteria 
 
 
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Tfu_1597  CDS  NC_007333  1840500  1841237  738  CRISPR-associated Cas5e family protein  YP_289655  decreased coverage  0.0035372  n/a    Thermobifida fusca YX  Bacteria 
 
 
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Tfu_1714  CDS  NC_007333  1994073  1995575  1503  hypothetical protein  YP_289772  decreased coverage  0.007229  n/a    Thermobifida fusca YX  Bacteria 
 
 
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Tfu_1742  CDS  NC_007333  2031337  2032182  846  glycosyltransferase  YP_289800  decreased coverage  0.00465779  n/a    Thermobifida fusca YX  Bacteria 
 
 
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Tfu_1782  CDS  NC_007333  2083780  2084505  726  ABC-type branched-chain amino acid transport systems ATPase component  YP_289840  decreased coverage  0.00215494  n/a    Thermobifida fusca YX  Bacteria 
 
 
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Tfu_1788  CDS  NC_007333  2089147  2090505  1359  hypothetical protein  YP_289846  decreased coverage  0.00862097  n/a    Thermobifida fusca YX  Bacteria 
 
 
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Tfu_1855  CDS  NC_007333  2162294  2163148  855  4'-phosphopantetheinyl transferase  YP_289911  decreased coverage  1.51687e-05  n/a    Thermobifida fusca YX  Bacteria 
 
 
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Tfu_1863  CDS  NC_007333  2171349  2171573  225  putative protein MbtH  YP_289919  decreased coverage  0.00579415  n/a    Thermobifida fusca YX  Bacteria 
 
 
-
 
Tfu_1878  CDS  NC_007333  2201095  2201922  828  enoyl-CoA hydratase  YP_289934  decreased coverage  0.000732842  n/a    Thermobifida fusca YX  Bacteria 
 
 
-
 
Tfu_1907  CDS  NC_007333  2232929  2233411  483  hypothetical protein  YP_289963  decreased coverage  5.9312e-15  n/a    Thermobifida fusca YX  Bacteria 
 
 
-
 
Tfu_2058  CDS  NC_007333  2409773  2411215  1443  hypothetical protein  YP_290114  decreased coverage  0.00793169  n/a    Thermobifida fusca YX  Bacteria 
 
 
-
 
Tfu_2063  CDS  NC_007333  2417380  2418207  828  putative rRNA methylase  YP_290119  decreased coverage  0.00825348  n/a    Thermobifida fusca YX  Bacteria 
 
 
-
 
Tfu_2291  CDS  NC_007333  2693942  2696062  2121  oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal  YP_290347  decreased coverage  0.00302442  n/a    Thermobifida fusca YX  Bacteria 
 
 
-
 
Tfu_2292  CDS  NC_007333  2696108  2696998  891  putative peptide ABC transporter permease protein  YP_290348  decreased coverage  0.00757502  n/a    Thermobifida fusca YX  Bacteria 
 
 
-
 
Tfu_2742  CDS  NC_007333  3221706  3222791  1086  phosphate ABC transporter permease  YP_290798  decreased coverage  0.00664487  n/a    Thermobifida fusca YX  Bacteria 
 
 
-
 
Tfu_2743  CDS  NC_007333  3222848  3223627  780  phosphate ABC transporter permease  YP_290799  decreased coverage  0.00299446  n/a    Thermobifida fusca YX  Bacteria 
 
 
-
 
Tfu_2824  CDS  NC_007333  3319266  3320315  1050  hypothetical protein  YP_290880  decreased coverage  0.00896291  n/a    Thermobifida fusca YX  Bacteria 
 
 
-
 
Tfu_2850  CDS  NC_007333  3354790  3354999  210  hypothetical protein  YP_290906  decreased coverage  0.00253115  n/a    Thermobifida fusca YX  Bacteria 
 
 
-
 
Tfu_2860  CDS  NC_007333  3364944  3366632  1689  putative transmembrane transport protein  YP_290916  decreased coverage  0.00253612  n/a    Thermobifida fusca YX  Bacteria 
 
 
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Tfu_2879  CDS  NC_007333  3393189  3393764  576  N-acetylglutamate synthase  YP_290935  decreased coverage  0.00976241  n/a    Thermobifida fusca YX  Bacteria 
 
 
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Tfu_3062  CDS  NC_007333  3576718  3578142  1425  protein phosphatase 2C-like  YP_291118  decreased coverage  0.00558874  n/a    Thermobifida fusca YX  Bacteria 
 
 
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Tfu_3063  CDS  NC_007333  3578139  3579581  1443  FtsW/RodA/SpoVE family cell cycle protein  YP_291119  decreased coverage  0.00913088  n/a    Thermobifida fusca YX  Bacteria 
 
 
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