171 decreased-coverage genes were found for selected organism/s



Page 1 of 2    << first  < prev  1  2    next >  last >>   


Locus tag

Gene type

Replicon accession

From

To

Strand

Gene Length

Product

Protein accession

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Organism name

Kingdom

Coverage Plot

PanDaTox homologs

Experimental validation
Mbar_A0027  CDS  NC_007355  32530  34323  1794  hypothetical protein  YP_303598  unclonable  1.39812e-08  decreased coverage  0.00503722  Methanosarcina barkeri str. Fusaro  Archaea 
 
 
-
 
Mbar_A0041  CDS  NC_007355  50775  52760  1986  hypothetical protein  YP_303612  decreased coverage  8.03916e-06  normal  0.0100415  Methanosarcina barkeri str. Fusaro  Archaea 
 
 
-
 
Mbar_A0045  CDS  NC_007355  53994  54329  336  hypothetical protein  YP_303616  decreased coverage  4.82488e-08  normal  0.0447995  Methanosarcina barkeri str. Fusaro  Archaea 
 
 
-
 
Mbar_A0046  CDS  NC_007355  54551  55108  558  hypothetical protein  YP_303617  decreased coverage  1.64559e-07  normal  0.0456795  Methanosarcina barkeri str. Fusaro  Archaea 
 
 
-
 
Mbar_A0050  CDS  NC_007355  58755  59837  1083  glycosyl transferase  YP_303620  decreased coverage  6.88339e-09  normal  0.0134291  Methanosarcina barkeri str. Fusaro  Archaea 
 
 
-
 
Mbar_A0051  CDS  NC_007355  59834  61033  1200  hypothetical protein  YP_303621  decreased coverage  1.51873e-07  hitchhiker  0.00624496  Methanosarcina barkeri str. Fusaro  Archaea 
 
 
-
 
Mbar_A0093  CDS  NC_007355  108856  109293  438  50S ribosomal protein L32e  YP_303660  decreased coverage  1.76335e-08  normal  Methanosarcina barkeri str. Fusaro  Archaea 
 
 
-
 
Mbar_A0094  CDS  NC_007355  109304  109837  534  50S ribosomal protein L6P  YP_303661  decreased coverage  1.67517e-07  normal  Methanosarcina barkeri str. Fusaro  Archaea 
 
 
-
 
Mbar_A0169  CDS  NC_007355  192941  193318  378  nitrogen regulatory protein P-II  YP_303734  decreased coverage  0.00936567  normal  0.629139  Methanosarcina barkeri str. Fusaro  Archaea 
 
 
-
 
Mbar_A0202  CDS  NC_007355  236481  237896  1416  acetyl-CoA decarbonylase/synthase complex subunit beta  YP_303766  decreased coverage  7.71907e-07  normal  Methanosarcina barkeri str. Fusaro  Archaea 
 
 
-
 
Mbar_A0236  CDS  NC_007355  277391  279742  2352  hypothetical protein  YP_303800  decreased coverage  7.17832e-06  normal  0.75423  Methanosarcina barkeri str. Fusaro  Archaea 
 
 
-
 
Mbar_A0306  CDS  NC_007355  359947  361317  1371  hypothetical protein  YP_303870  decreased coverage  0.00024909  normal  Methanosarcina barkeri str. Fusaro  Archaea 
 
 
-
 
Mbar_A0612  CDS  NC_007355  735929  736249  321  50S ribosomal protein L12P  YP_304172  decreased coverage  2.27092e-09  normal  Methanosarcina barkeri str. Fusaro  Archaea 
 
 
-
 
Mbar_A0928  CDS  NC_007355  1122304  1123128  825  oligopeptide ABC transporter, permease protein  YP_304481  decreased coverage  0.00180433  normal  Methanosarcina barkeri str. Fusaro  Archaea 
 
 
-
 
Mbar_A1228  CDS  NC_007355  1518384  1518890  507  hypothetical protein  YP_304774  decreased coverage  0.00146717  normal  Methanosarcina barkeri str. Fusaro  Archaea 
 
 
-
 
Mbar_A1229  CDS  NC_007355  1519674  1520672  999  hypothetical protein  YP_304775  decreased coverage  0.00281517  normal  Methanosarcina barkeri str. Fusaro  Archaea 
 
 
-
 
Mbar_A1283  CDS  NC_007355  1589353  1590294  942  oligopeptide ABC transporter, permease protein  YP_304826  decreased coverage  0.000188378  normal  Methanosarcina barkeri str. Fusaro  Archaea 
 
 
-
 
Mbar_A1284  CDS  NC_007355  1590414  1592051  1638  oligopeptide ABC transporter, solute-binding protein  YP_304827  decreased coverage  0.000669385  normal  Methanosarcina barkeri str. Fusaro  Archaea 
 
 
-
 
Mbar_A1322    NC_007355  1632464  1633761  1298      decreased coverage  2.22918e-07  normal  0.976606  Methanosarcina barkeri str. Fusaro  Archaea 
 
 
-
 
Mbar_A1352  CDS  NC_007355  1666575  1667273  699  hypothetical protein  YP_304893  decreased coverage  0.00554372  normal  Methanosarcina barkeri str. Fusaro  Archaea 
 
 
-
 
Mbar_A1354  CDS  NC_007355  1668609  1669703  1095  hypothetical protein  YP_304895  decreased coverage  0.00474822  normal  Methanosarcina barkeri str. Fusaro  Archaea 
 
 
-
 
Mbar_A1411  CDS  NC_007355  1739307  1740218  912  hypothetical protein  YP_304950  decreased coverage  0.00357704  normal  0.0994638  Methanosarcina barkeri str. Fusaro  Archaea 
 
 
-
 
Mbar_A1417  CDS  NC_007355  1747255  1748220  966  dimethylallyltranstransferase / geranyltranstransferase  YP_304956  decreased coverage  2.31045e-05  decreased coverage  0.000138058  Methanosarcina barkeri str. Fusaro  Archaea 
 
 
-
 
Mbar_A1439  CDS  NC_007355  1772711  1773349  639  methyltransferase  YP_304977  decreased coverage  0.00779237  normal  Methanosarcina barkeri str. Fusaro  Archaea 
 
 
-
 
Mbar_A1456  CDS  NC_007355  1787661  1788017  357  hypothetical protein  YP_304993  decreased coverage  0.00288241  normal  Methanosarcina barkeri str. Fusaro  Archaea 
 
 
-
 
Mbar_A1469  CDS  NC_007355  1803619  1803924  306  hypothetical protein  YP_305006  decreased coverage  3.60016e-08  normal  Methanosarcina barkeri str. Fusaro  Archaea 
 
 
-
 
Mbar_A1473  CDS  NC_007355  1811446  1813485  2040  cell surface protein  YP_305010  decreased coverage  0.00112835  normal  Methanosarcina barkeri str. Fusaro  Archaea 
 
 
-
 
Mbar_A1501  CDS  NC_007355  1857822  1858448  627  dimethylamine corrinoid protein  YP_305036  decreased coverage  1.26339e-07  normal  Methanosarcina barkeri str. Fusaro  Archaea 
 
 
-
 
Mbar_A1502    NC_007355  1858475  1859962  1488      decreased coverage  6.11033e-05  normal  Methanosarcina barkeri str. Fusaro  Archaea 
 
 
-
 
Mbar_A1709  CDS  NC_007355  2106505  2107476  972  hypothetical protein  YP_305231  decreased coverage  0.00218353  normal  Methanosarcina barkeri str. Fusaro  Archaea 
 
 
-
 
Mbar_A1733  CDS  NC_007355  2123192  2124670  1479  reverse transcriptase  YP_305255  decreased coverage  0.000121059  normal  Methanosarcina barkeri str. Fusaro  Archaea 
 
 
-
 
Mbar_A1752  CDS  NC_007355  2146476  2147876  1401  single-stranded-DNA-specific exonuclease RecJ  YP_305274  decreased coverage  3.95998e-08  normal  Methanosarcina barkeri str. Fusaro  Archaea 
 
 
-
 
Mbar_A1770  CDS  NC_007355  2169828  2171405  1578  hypothetical protein  YP_305291  decreased coverage  0.00169555  normal  Methanosarcina barkeri str. Fusaro  Archaea 
 
 
-
 
Mbar_A1821  CDS  NC_007355  2275987  2276988  1002  phosphotransacetylase  YP_305342  decreased coverage  1.35779e-08  normal  Methanosarcina barkeri str. Fusaro  Archaea 
 
 
-
 
Mbar_A1927  CDS  NC_007355  2404724  2405452  729  transposase, putative  YP_305446  decreased coverage  0.00509711  normal  0.564487  Methanosarcina barkeri str. Fusaro  Archaea 
 
 
-
 
Mbar_A1996  CDS  NC_007355  2517874  2519217  1344  Mrr restriction system protein-like  YP_305510  decreased coverage  0.00366255  normal  0.311144  Methanosarcina barkeri str. Fusaro  Archaea 
 
 
-
 
Mbar_A1997  CDS  NC_007355  2519655  2520749  1095  hypothetical protein  YP_305511  decreased coverage  0.0015119  normal  Methanosarcina barkeri str. Fusaro  Archaea 
 
 
-
 
Mbar_A2012  CDS  NC_007355  2540375  2540899  525  ArsR family transcriptional regulator  YP_305526  decreased coverage  0.00760296  normal  Methanosarcina barkeri str. Fusaro  Archaea 
 
 
-
 
Mbar_A2064  CDS  NC_007355  2607346  2608086  741  hypothetical protein  YP_305576  decreased coverage  2.7649e-06  normal  0.606425  Methanosarcina barkeri str. Fusaro  Archaea 
 
 
-
 
Mbar_A2080  CDS  NC_007355  2631590  2632741  1152  phosphoserine aminotransferase / L-aspartate aminotransferase  YP_305591  decreased coverage  0.00351015  normal  0.87954  Methanosarcina barkeri str. Fusaro  Archaea 
 
 
-
 
Mbar_A2081  CDS  NC_007355  2632843  2633307  465  riboflavin synthase  YP_305592  decreased coverage  0.000484494  normal  Methanosarcina barkeri str. Fusaro  Archaea 
 
 
-
 
Mbar_A2114  CDS  NC_007355  2672423  2672698  276  hypothetical protein  YP_305625  decreased coverage  0.00651332  normal  Methanosarcina barkeri str. Fusaro  Archaea 
 
 
-
 
Mbar_A2122  CDS  NC_007355  2676928  2677146  219  hypothetical protein  YP_305633  decreased coverage  0.00580753  normal  0.970556  Methanosarcina barkeri str. Fusaro  Archaea 
 
 
-
 
Mbar_A2133  CDS  NC_007355  2692433  2692843  411  hypothetical protein  YP_305644  decreased coverage  0.00347089  normal  0.228886  Methanosarcina barkeri str. Fusaro  Archaea 
 
 
-
 
Mbar_A2135    NC_007355  2693311  2693433  123      decreased coverage  0.00416106  normal  0.0877451  Methanosarcina barkeri str. Fusaro  Archaea 
 
 
-
 
Mbar_A2141  CDS  NC_007355  2703849  2705099  1251  glycosyltransferase  YP_305650  decreased coverage  0.00102383  normal  0.405566  Methanosarcina barkeri str. Fusaro  Archaea 
 
 
-
 
Mbar_A2208  CDS  NC_007355  2801727  2803034  1308  transposase  YP_305714  decreased coverage  0.000207559  normal  0.0676192  Methanosarcina barkeri str. Fusaro  Archaea 
 
 
-
 
Mbar_A2209  CDS  NC_007355  2802984  2804231  1248  DNA methylase (modification methylase) (methyltransferase)  YP_305715  decreased coverage  1.72069e-06  normal  0.0419277  Methanosarcina barkeri str. Fusaro  Archaea 
 
 
-
 
Mbar_A2210  CDS  NC_007355  2804744  2807254  2511  type II restriction enzyme, methylase subunit  YP_305716  decreased coverage  0.000292861  normal  0.0590871  Methanosarcina barkeri str. Fusaro  Archaea 
 
 
-
 
Mbar_A2220  CDS  NC_007355  2817888  2818859  972  glycerate dehydrogenase  YP_305726  normal  0.289915  decreased coverage  0.00653972  Methanosarcina barkeri str. Fusaro  Archaea 
 
 
-
 
Mbar_A2221  CDS  NC_007355  2819136  2820908  1773  putative chloride channel  YP_305727  normal  0.247066  decreased coverage  0.00811968  Methanosarcina barkeri str. Fusaro  Archaea 
 
 
-
 
Mbar_A2245  CDS  NC_007355  2853465  2853854  390  hypothetical protein  YP_305750  decreased coverage  8.95705e-05  normal  Methanosarcina barkeri str. Fusaro  Archaea 
 
 
-
 
Mbar_A2246  CDS  NC_007355  2854024  2855019  996  hypothetical protein  YP_305751  decreased coverage  0.000215357  normal  Methanosarcina barkeri str. Fusaro  Archaea 
 
 
-
 
Mbar_A2252  CDS  NC_007355  2860811  2861380  570  acetyltransferase  YP_305757  decreased coverage  0.000131288  normal  Methanosarcina barkeri str. Fusaro  Archaea 
 
 
-
 
Mbar_A2257  CDS  NC_007355  2865298  2866764  1467  asparagine synthetase (glutamine-hydrolyzing)  YP_305762  decreased coverage  0.00601101  normal  Methanosarcina barkeri str. Fusaro  Archaea 
 
 
-
 
Mbar_A2278  CDS  NC_007355  2887882  2889279  1398  nitrogenase, subunit alpha  YP_305783  decreased coverage  7.40744e-05  normal  0.119504  Methanosarcina barkeri str. Fusaro  Archaea 
 
 
-
 
Mbar_A2279  CDS  NC_007355  2889300  2889671  372  P-II family nitrogen regulatory protein  YP_305784  decreased coverage  4.18064e-05  normal  0.159182  Methanosarcina barkeri str. Fusaro  Archaea 
 
 
-
 
Mbar_A2280  CDS  NC_007355  2889719  2890036  318  nitrogen regulatory protein P-II  YP_305785  decreased coverage  3.32901e-05  normal  0.155983  Methanosarcina barkeri str. Fusaro  Archaea 
 
 
-
 
Mbar_A2281  CDS  NC_007355  2890054  2890881  828  nitrogenase reductase  YP_305786  decreased coverage  0.000562599  normal  0.173141  Methanosarcina barkeri str. Fusaro  Archaea 
 
 
-
 
Mbar_A2283  CDS  NC_007355  2893968  2894489  522  thioredoxin  YP_305788  decreased coverage  0.000888091  normal  0.229948  Methanosarcina barkeri str. Fusaro  Archaea 
 
 
-
 
Mbar_A2296  CDS  NC_007355  2910462  2911652  1191  transposase  YP_305800  decreased coverage  0.00584103  normal  0.663647  Methanosarcina barkeri str. Fusaro  Archaea 
 
 
-
 
Mbar_A2346  CDS  NC_007355  2972750  2973421  672  di-trans-poly-cis-decaprenylcistransferase  YP_305848  decreased coverage  0.0014458  normal  0.0426929  Methanosarcina barkeri str. Fusaro  Archaea 
 
 
-
 
Mbar_A2347  CDS  NC_007355  2974483  2974833  351  nitrogen regulatory protein P-II  YP_305849  decreased coverage  0.000160523  normal  0.064665  Methanosarcina barkeri str. Fusaro  Archaea 
 
 
-
 
Mbar_A2360  CDS  NC_007355  2986794  2987114  321  transposase  YP_305861  decreased coverage  0.00308299  hitchhiker  0.00959569  Methanosarcina barkeri str. Fusaro  Archaea 
 
 
-
 
Mbar_A2371  CDS  NC_007355  2994050  2995078  1029  hypothetical protein  YP_305872  decreased coverage  0.00419392  normal  0.299083  Methanosarcina barkeri str. Fusaro  Archaea 
 
 
-
 
Mbar_A2383  CDS  NC_007355  3013277  3014494  1218  hypothetical protein  YP_305884  decreased coverage  0.00285086  normal  Methanosarcina barkeri str. Fusaro  Archaea 
 
 
-
 
Mbar_A2432  CDS  NC_007355  3071050  3071553  504  rubredoxin  YP_305930  decreased coverage  0.000792123  normal  0.129833  Methanosarcina barkeri str. Fusaro  Archaea 
 
 
-
 
Mbar_A2436  CDS  NC_007355  3076846  3081204  4359  hypothetical protein  YP_305934  decreased coverage  0.0056362  normal  Methanosarcina barkeri str. Fusaro  Archaea 
 
 
-
 
Mbar_A2442  CDS  NC_007355  3084922  3085545  624  hypothetical protein  YP_305939  decreased coverage  1.16463e-08  normal  Methanosarcina barkeri str. Fusaro  Archaea 
 
 
-
 
Mbar_A2459  CDS  NC_007355  3106484  3106720  237  dihydropteroate synthase  YP_305954  decreased coverage  0.000366314  normal  0.040304  Methanosarcina barkeri str. Fusaro  Archaea 
 
 
-
 
Mbar_A2495  CDS  NC_007355  3150398  3151291  894  hypothetical protein  YP_305988  decreased coverage  0.000133938  normal  Methanosarcina barkeri str. Fusaro  Archaea 
 
 
-
 
Mbar_A2510  CDS  NC_007355  3165281  3165754  474  transcriptional regulator  YP_306003  decreased coverage  0.000843612  normal  0.354799  Methanosarcina barkeri str. Fusaro  Archaea 
 
 
-
 
Mbar_A2532  CDS  NC_007355  3193870  3194058  189  hypothetical protein  YP_306025  decreased coverage  2.19461e-05  normal  0.306299  Methanosarcina barkeri str. Fusaro  Archaea 
 
 
-
 
Mbar_A2554  CDS  NC_007355  3225153  3225449  297  hypothetical protein  YP_306047  decreased coverage  0.000739327  normal  0.378174  Methanosarcina barkeri str. Fusaro  Archaea 
 
 
-
 
Mbar_A2573  CDS  NC_007355  3248771  3249553  783  hypothetical protein  YP_306064  decreased coverage  4.74072e-05  normal  0.0702383  Methanosarcina barkeri str. Fusaro  Archaea 
 
 
-
 
Mbar_A2600  CDS  NC_007355  3290043  3290579  537  hypothetical protein  YP_306090  decreased coverage  0.00823962  normal  0.575459  Methanosarcina barkeri str. Fusaro  Archaea 
 
 
-
 
Mbar_A2621  CDS  NC_007355  3314883  3318677  3795  hypothetical protein  YP_306110  decreased coverage  0.00523744  normal  0.363558  Methanosarcina barkeri str. Fusaro  Archaea 
 
 
-
 
Mbar_A2624  CDS  NC_007355  3321011  3321361  351  hypothetical protein  YP_306112  decreased coverage  1.71907e-07  normal  0.249257  Methanosarcina barkeri str. Fusaro  Archaea 
 
 
-
 
Mbar_A2637  CDS  NC_007355  3336701  3337159  459  MarR family transcriptional regulator  YP_306123  decreased coverage  0.00137788  normal  0.21976  Methanosarcina barkeri str. Fusaro  Archaea 
 
 
-
 
Mbar_A2652  CDS  NC_007355  3358595  3361354  2760  hypothetical protein  YP_306138  decreased coverage  0.00496775  normal  0.0664064  Methanosarcina barkeri str. Fusaro  Archaea 
 
 
-
 
Mbar_A2659  CDS  NC_007355  3369234  3369497  264  hypothetical protein  YP_306145  decreased coverage  0.00839346  normal  0.374075  Methanosarcina barkeri str. Fusaro  Archaea 
 
 
-
 
Mbar_A2682  CDS  NC_007355  3396965  3397237  273  putative transposase  YP_306166  decreased coverage  0.00783753  normal  0.224541  Methanosarcina barkeri str. Fusaro  Archaea 
 
 
-
 
Mbar_A2688  CDS  NC_007355  3406067  3406552  486  hypothetical protein  YP_306172  decreased coverage  4.64227e-10  normal  0.10076  Methanosarcina barkeri str. Fusaro  Archaea 
 
 
-
 
Mbar_A2698  CDS  NC_007355  3422504  3423322  819  hypothetical protein  YP_306182  decreased coverage  0.000472766  normal  0.109857  Methanosarcina barkeri str. Fusaro  Archaea 
 
 
-
 
Mbar_A2699  CDS  NC_007355  3423670  3424077  408  putative inorganic pyrophosphatase  YP_306183  decreased coverage  0.000354284  normal  0.248816  Methanosarcina barkeri str. Fusaro  Archaea 
 
 
-
 
Mbar_A2704  CDS  NC_007355  3430955  3432700  1746  hypothetical protein  YP_306188  decreased coverage  0.00140481  normal  0.0421451  Methanosarcina barkeri str. Fusaro  Archaea 
 
 
-
 
Mbar_A2721  CDS  NC_007355  3456225  3457334  1110  hypothetical protein  YP_306205  normal  0.504995  decreased coverage  6.94638e-05  Methanosarcina barkeri str. Fusaro  Archaea 
 
 
-
 
Mbar_A2724  CDS  NC_007355  3459886  3460308  423  hypothetical protein  YP_306207  normal  0.277726  decreased coverage  3.77409e-05  Methanosarcina barkeri str. Fusaro  Archaea 
 
 
-
 
Mbar_A2728  CDS  NC_007355  3464665  3466065  1401  hypothetical protein  YP_306211  normal  0.183728  decreased coverage  6.09348e-05  Methanosarcina barkeri str. Fusaro  Archaea 
 
 
-
 
Mbar_A2729  CDS  NC_007355  3466550  3467920  1371  hydrolase  YP_306212  normal  0.252968  decreased coverage  5.38772e-05  Methanosarcina barkeri str. Fusaro  Archaea 
 
 
-
 
Mbar_A2733  CDS  NC_007355  3472319  3473092  774  Fe(III) dicitrate ABC transporter, ATP-binding protein  YP_306216  decreased coverage  4.67134e-05  hitchhiker  0.000159988  Methanosarcina barkeri str. Fusaro  Archaea 
 
 
-
 
Mbar_A2734  CDS  NC_007355  3473089  3474132  1044  Fe(III) dicitrate ABC transporter, permease  YP_306217  decreased coverage  0.000167037  hitchhiker  0.000165993  Methanosarcina barkeri str. Fusaro  Archaea 
 
 
-
 
Mbar_A2735  CDS  NC_007355  3474129  3475412  1284  putative iron complex transport system substrate-binding protein  YP_306218  normal  0.0180927  decreased coverage  6.09348e-05  Methanosarcina barkeri str. Fusaro  Archaea 
 
 
-
 
Mbar_A2736  CDS  NC_007355  3475443  3476039  597  hypothetical protein  YP_306219  hitchhiker  0.000478028  decreased coverage  4.79797e-05  Methanosarcina barkeri str. Fusaro  Archaea 
 
 
-
 
Mbar_A2737  CDS  NC_007355  3476469  3477305  837  methyltransferase  YP_306220  decreased coverage  0.000116085  decreased coverage  4.79797e-05  Methanosarcina barkeri str. Fusaro  Archaea 
 
 
-
 
Mbar_A2755  CDS  NC_007355  3502798  3503496  699  phosphoribosylformylglycinamidine synthase I  YP_306238  decreased coverage  0.000714476  hitchhiker  0.00646528  Methanosarcina barkeri str. Fusaro  Archaea 
 
 
-
 
Mbar_A2756  CDS  NC_007355  3503559  3503810  252  phosphoribosylformylglycinamidine synthase subunit PurS  YP_306239  decreased coverage  0.000166131  hitchhiker  0.00543872  Methanosarcina barkeri str. Fusaro  Archaea 
 
 
-
 
Mbar_A2773    NC_007355  3522866  3523036  171      decreased coverage  0.000883966  normal  0.0437414  Methanosarcina barkeri str. Fusaro  Archaea 
 
 
-
 
Mbar_A2774  CDS  NC_007355  3523029  3523409  381  transposase  YP_306255  decreased coverage  0.000655562  normal  0.0461255  Methanosarcina barkeri str. Fusaro  Archaea 
 
 
-
 
Mbar_A2785  CDS  NC_007355  3555451  3556542  1092  hypothetical protein  YP_306266  decreased coverage  0.000421283  hitchhiker  0.000487989  Methanosarcina barkeri str. Fusaro  Archaea 
 
 
-
 
Page 1 of 2    << first  < prev  1  2    next >  last >>