48 decreased-coverage genes were found for selected organism/s



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Locus tag

Gene type

Replicon accession

From

To

Strand

Gene Length

Product

Protein accession

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Organism name

Kingdom

Coverage Plot

PanDaTox homologs

Experimental validation
Rru_A0033  CDS  NC_007643  37268  37780  513  cytochrome C biogenesis protein  YP_425125  decreased coverage  0.00807478  n/a    Rhodospirillum rubrum ATCC 11170  Bacteria 
 
 
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Rru_A0257  CDS  NC_007643  318316  319392  1077  hypothetical protein  YP_425349  decreased coverage  0.000425261  n/a    Rhodospirillum rubrum ATCC 11170  Bacteria 
 
 
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Rru_A0258  CDS  NC_007643  319389  320447  1059  peptidase M48, Ste24p  YP_425350  decreased coverage  0.00863149  n/a    Rhodospirillum rubrum ATCC 11170  Bacteria 
 
 
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Rru_A0394  CDS  NC_007643  469734  470972  1239  N-acetylglutamate synthase / glutamate N-acetyltransferase  YP_425486  decreased coverage  0.00326429  n/a    Rhodospirillum rubrum ATCC 11170  Bacteria 
 
 
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Rru_A0724  CDS  NC_007643  852287  853108  822  hypothetical protein  YP_425815  decreased coverage  0.00450807  n/a    Rhodospirillum rubrum ATCC 11170  Bacteria 
 
 
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Rru_A0757  CDS  NC_007643  889755  890321  567  isochorismatase hydrolase  YP_425848  decreased coverage  0.000750492  n/a    Rhodospirillum rubrum ATCC 11170  Bacteria 
 
 
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Rru_A0843  CDS  NC_007643  1002695  1004428  1734  ABC transporter component  YP_425931  decreased coverage  0.00459321  n/a    Rhodospirillum rubrum ATCC 11170  Bacteria 
 
 
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Rru_A0945  CDS  NC_007643  1127986  1129308  1323  cell division protein FtsA  YP_426033  decreased coverage  0.000880063  n/a    Rhodospirillum rubrum ATCC 11170  Bacteria 
 
 
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Rru_A0973  CDS  NC_007643  1158739  1159161  423  hypothetical protein  YP_426061  decreased coverage  0.0086355  n/a    Rhodospirillum rubrum ATCC 11170  Bacteria 
 
 
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Rru_A1021  CDS  NC_007643  1210454  1211374  921  RNA polymerase factor sigma-32  YP_426109  decreased coverage  0.000226407  n/a    Rhodospirillum rubrum ATCC 11170  Bacteria 
 
 
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Rru_A1215  CDS  NC_007643  1435699  1437099  1401  dihydrolipoamide dehydrogenase  YP_426303  decreased coverage  0.00663567  n/a    Rhodospirillum rubrum ATCC 11170  Bacteria 
 
 
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Rru_A1232  CDS  NC_007643  1454447  1455769  1323  C-terminal processing peptidase S41A  YP_426320  decreased coverage  0.00731341  n/a    Rhodospirillum rubrum ATCC 11170  Bacteria 
 
 
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Rru_A1262  CDS  NC_007643  1483060  1484334  1275  extracellular solute-binding protein  YP_426350  decreased coverage  0.00529057  n/a    Rhodospirillum rubrum ATCC 11170  Bacteria 
 
 
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Rru_A1293  CDS  NC_007643  1526396  1528084  1689  methyl-accepting chemotaxis sensory transducer  YP_426381  decreased coverage  0.00511002  n/a    Rhodospirillum rubrum ATCC 11170  Bacteria 
 
 
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Rru_A1411  CDS  NC_007643  1668777  1669448  672  hypothetical protein  YP_426499  decreased coverage  0.00806317  n/a    Rhodospirillum rubrum ATCC 11170  Bacteria 
 
 
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Rru_A1732  CDS  NC_007643  2026738  2027199  462  hypothetical protein  YP_426819  decreased coverage  0.000558594  n/a    Rhodospirillum rubrum ATCC 11170  Bacteria 
 
 
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Rru_A1764  CDS  NC_007643  2056240  2057706  1467  SecD export membrane protein  YP_426851  decreased coverage  0.00179292  n/a    Rhodospirillum rubrum ATCC 11170  Bacteria 
 
 
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Rru_A1776  CDS  NC_007643  2067306  2067992  687  peptidase M50  YP_426863  decreased coverage  0.00724949  n/a    Rhodospirillum rubrum ATCC 11170  Bacteria 
 
 
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Rru_A1859  CDS  NC_007643  2157440  2158084  645  hypothetical protein  YP_426946  decreased coverage  0.00561567  n/a    Rhodospirillum rubrum ATCC 11170  Bacteria 
 
 
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Rru_A1891  CDS  NC_007643  2191371  2192885  1515  anthranilate synthase component I  YP_426978  decreased coverage  0.00894891  n/a    Rhodospirillum rubrum ATCC 11170  Bacteria 
 
 
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Rru_A2113  CDS  NC_007643  2451696  2453102  1407  Serine-type D-Ala-D-Ala carboxypeptidase  YP_427200  decreased coverage  0.00805596  n/a    Rhodospirillum rubrum ATCC 11170  Bacteria 
 
 
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Rru_A2175  CDS  NC_007643  2525937  2526971  1035  oligopeptide/dipeptide ABC transporter, ATP-binding protein-like  YP_427262  decreased coverage  0.00209002  n/a    Rhodospirillum rubrum ATCC 11170  Bacteria 
 
 
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Rru_A2265  CDS  NC_007643  2625230  2626531  1302  electron transfer flavoprotein-ubiquinone oxidoreductase  YP_427352  decreased coverage  0.00453186  n/a    Rhodospirillum rubrum ATCC 11170  Bacteria 
 
 
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Rru_A2298  CDS  NC_007643  2659133  2660233  1101  hypothetical protein  YP_427385  decreased coverage  0.00541193  n/a    Rhodospirillum rubrum ATCC 11170  Bacteria 
 
 
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Rru_A2306  CDS  NC_007643  2669862  2670212  351  hypothetical protein  YP_427393  decreased coverage  0.000726831  n/a    Rhodospirillum rubrum ATCC 11170  Bacteria 
 
 
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Rru_A2307  CDS  NC_007643  2670230  2671585  1356  twin-arginine translocation pathway signal  YP_427394  decreased coverage  0.00993475  n/a    Rhodospirillum rubrum ATCC 11170  Bacteria 
 
 
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Rru_A2358  CDS  NC_007643  2745077  2746054  978  binding-protein dependent transport system inner membrane protein  YP_427445  decreased coverage  0.0041111  n/a    Rhodospirillum rubrum ATCC 11170  Bacteria 
 
 
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Rru_A2413  CDS  NC_007643  2814198  2815994  1797  Poly(R)-hydroxyalkanoic acid synthase, class I  YP_427500  decreased coverage  0.00967044  n/a    Rhodospirillum rubrum ATCC 11170  Bacteria 
 
 
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Rru_A2454  CDS  NC_007643  2852859  2853830  972  hypothetical protein  YP_427541  decreased coverage  0.000139037  n/a    Rhodospirillum rubrum ATCC 11170  Bacteria 
 
 
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Rru_A2592  CDS  NC_007643  3012477  3013172  696  hypothetical protein  YP_427676  decreased coverage  0.00466084  n/a    Rhodospirillum rubrum ATCC 11170  Bacteria 
 
 
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Rru_A2607  CDS  NC_007643  3032781  3033320  540  hypothetical protein  YP_427691  decreased coverage  0.000175391  n/a    Rhodospirillum rubrum ATCC 11170  Bacteria 
 
 
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Rru_A2685  CDS  NC_007643  3105453  3106292  840  50S ribosomal protein L2  YP_427769  decreased coverage  0.00277969  n/a    Rhodospirillum rubrum ATCC 11170  Bacteria 
 
 
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Rru_A2748  CDS  NC_007643  3180985  3181680  696  ABC transporter component  YP_427832  decreased coverage  0.00767275  n/a    Rhodospirillum rubrum ATCC 11170  Bacteria 
 
 
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Rru_A2801  CDS  NC_007643  3234078  3234539  462  thiol-disulfide interchange protein  YP_427885  decreased coverage  0.00941693  n/a    Rhodospirillum rubrum ATCC 11170  Bacteria 
 
 
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Rru_A2850  CDS  NC_007643  3280222  3280551  330  hypothetical protein  YP_427934  decreased coverage  0.00545868  n/a    Rhodospirillum rubrum ATCC 11170  Bacteria 
 
 
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Rru_A2858  CDS  NC_007643  3290935  3291804  870  flagellin-like  YP_427942  decreased coverage  0.00447179  n/a    Rhodospirillum rubrum ATCC 11170  Bacteria 
 
 
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Rru_A2930  CDS  NC_007643  3375287  3376345  1059  periplasmic sensor Signal transduction histidine kinase  YP_428014  decreased coverage  0.00193882  n/a    Rhodospirillum rubrum ATCC 11170  Bacteria 
 
 
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Rru_A2986  CDS  NC_007643  3438410  3439843  1434  tricarballylate dehydrogenase  YP_428068  decreased coverage  0.0071938  n/a    Rhodospirillum rubrum ATCC 11170  Bacteria 
 
 
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Rru_A3060  CDS  NC_007643  3523910  3524125  216  hypothetical protein  YP_428142  decreased coverage  0.00429325  n/a    Rhodospirillum rubrum ATCC 11170  Bacteria 
 
 
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Rru_A3073  CDS  NC_007643  3538519  3539238  720  phosphoesterase, PA-phosphatase related  YP_428155  decreased coverage  5.22612e-05  n/a    Rhodospirillum rubrum ATCC 11170  Bacteria 
 
 
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Rru_A3074  CDS  NC_007643  3539235  3540776  1542  glycosyltransferase  YP_428156  decreased coverage  0.0020891  n/a    Rhodospirillum rubrum ATCC 11170  Bacteria 
 
 
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Rru_A3085  CDS  NC_007643  3550079  3551446  1368  Pyrrolo-quinoline quinone  YP_428167  decreased coverage  0.00761305  n/a    Rhodospirillum rubrum ATCC 11170  Bacteria 
 
 
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Rru_A3139  CDS  NC_007643  3621254  3622108  855  GntR family transcriptional regulator  YP_428221  decreased coverage  0.00307264  n/a    Rhodospirillum rubrum ATCC 11170  Bacteria 
 
 
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Rru_A3475  CDS  NC_007643  3999485  3999910  426  cysteine desulfuration protein SufE  YP_428556  decreased coverage  0.00677521  n/a    Rhodospirillum rubrum ATCC 11170  Bacteria 
 
 
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Rru_A3498  CDS  NC_007643  4027043  4027681  639  ubiquinone biosynthesis protein COQ7  YP_428579  decreased coverage  0.00704542  n/a    Rhodospirillum rubrum ATCC 11170  Bacteria 
 
 
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Rru_A3521  CDS  NC_007643  4053441  4053638  198  50S ribosomal protein L35P  YP_428602  decreased coverage  0.0090517  n/a    Rhodospirillum rubrum ATCC 11170  Bacteria 
 
 
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Rru_A3600  CDS  NC_007643  4141035  4142342  1308  ATP-dependent protease ATP-binding subunit HslU  YP_428681  decreased coverage  0.00234742  n/a    Rhodospirillum rubrum ATCC 11170  Bacteria 
 
 
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Rru_A3797  CDS  NC_007643  4347212  4348771  1560  2-octaprenylphenol hydroxylase  YP_428878  decreased coverage  0.00377233  n/a    Rhodospirillum rubrum ATCC 11170  Bacteria 
 
 
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