42 decreased-coverage genes were found for selected organism/s



Page 1 of 1    << first  < prev  1  next >  last >>   


Locus tag
Gene type
Replicon accession
From
To
Strand
Gene Length
Product
Protein accession
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Organism name
Kingdom
Coverage Plot
PanDaTox homologs
Experimental validation
Bcep18194_B0078  CDS  NC_007511  85810  86706  +  897  dihydrodipicolinate synthase  YP_370839  decreased coverage  0.00671629  normal  1  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_B0120  CDS  NC_007511  129495  130919  +  1425  outer membrane porin  YP_370881  decreased coverage  0.00350083  normal  1  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_B0121  CDS  NC_007511  130974  131969  -  996  DedA family protein  YP_370882  decreased coverage  0.00355931  normal  1  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_B0515  CDS  NC_007511  580207  580536  +  330  hypothetical protein  YP_371273  decreased coverage  0.00000000189507  normal  1  Burkholderia sp. 383  Bacteria 
 
 
 
Bcep18194_B0648  CDS  NC_007511  724363  728703  +  4341  Rhs family protein  YP_371406  decreased coverage  0.000723582  normal  1  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_B0759  CDS  NC_007511  864342  866564  +  2223  Amylo-alpha-1,6-glucosidase  YP_371517  normal  0.043283  decreased coverage  0.0000165021  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_B0760  CDS  NC_007511  866661  866912  +  252  hypothetical protein  YP_371518  normal  0.110621  decreased coverage  0.00000850392  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_B0767  CDS  NC_007511  872317  873702  -  1386  periplasmic sensor signal transduction histidine kinase  YP_371525  decreased coverage  0.000842214  hitchhiker  0.00217616  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_B1029  CDS  NC_007511  1157140  1157349  +  210  hypothetical protein  YP_371787  normal  1  decreased coverage  0.0093112  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_B1064  CDS  NC_007511  1189574  1190254  +  681  Type II secretory pathway component PulJ  YP_371822  decreased coverage  0.00786562  normal  1  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_B1087  CDS  NC_007511  1228561  1230357  +  1797  MotA/TolQ/ExbB proton channel  YP_371845  decreased coverage  0.000962589  normal  0.110672  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_B1088  CDS  NC_007511  1230376  1230786  +  411  biopolymer transport protein ExbD/TolR  YP_371846  decreased coverage  0.00516772  normal  0.155031  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_B1155  CDS  NC_007511  1297176  1298090  -  915  LysR family transcriptional regulator  YP_371913  decreased coverage  0.0046037  normal  0.529732  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_B1193  CDS  NC_007511  1343393  1344553  +  1161  HlyD family secretion protein  YP_371951  decreased coverage  0.0000000000622308  normal  0.342064  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_B1270  CDS  NC_007511  1438065  1438748  +  684  putative threonine efflux protein-like  YP_372028  decreased coverage  0.00299946  normal  1  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_B1271  CDS  NC_007511  1438845  1440299  -  1455  EmrB/QacA family drug resistance transporter  YP_372029  decreased coverage  0.00841234  normal  1  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_B1290  CDS  NC_007511  1458327  1460570  -  2244  penicillin-binding protein 1C  YP_372048  decreased coverage  0.00589164  normal  1  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_B1395  CDS  NC_007511  1586054  1587007  -  954  3-hydroxyacyl-CoA dehydrogenase  YP_372153  decreased coverage  0.00339633  normal  1  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_B1559  CDS  NC_007511  1762777  1767045  +  4269  hypothetical protein  YP_372317  decreased coverage  0.00113034  normal  0.54885  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_B1621  CDS  NC_007511  1844752  1845876  +  1125  GTP cyclohydrolase II / 3,4-dihydroxy-2-butanone 4-phosphate synthase  YP_372379  decreased coverage  0.00103143  normal  0.573554  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_B1628  CDS  NC_007511  1853906  1854517  -  612  hypothetical protein  YP_372386  decreased coverage  0.00592272  normal  0.624531  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_B1661  CDS  NC_007511  1890004  1891125  -  1122  branched chain amino acid ABC transporter periplasmic ligand-binding protein  YP_372419  decreased coverage  0.00010868  normal  0.0729717  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_B1760  CDS  NC_007511  2001306  2002490  +  1185  hypothetical protein  YP_372518  normal  1  decreased coverage  0.00200685  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_B1871  CDS  NC_007511  2142092  2143363  +  1272  major facilitator transporter  YP_372629  decreased coverage  0.00153919  normal  0.351915  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_B1872  CDS  NC_007511  2143391  2145811  +  2421  Alpha-glucosidase  YP_372630  decreased coverage  0.00900175  normal  0.24419  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_B1873  CDS  NC_007511  2145915  2147102  +  1188  outer membrane protein (porin)  YP_372631  decreased coverage  0.000645139  normal  0.212155  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_B1900  CDS  NC_007511  2175919  2176746  -  828  SH3 domain-containing protein  YP_372658  decreased coverage  0.00351157  normal  0.463921  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_B1901  CDS  NC_007511  2176780  2177220  -  441  hypothetical protein  YP_372659  decreased coverage  0.00125649  normal  0.432856  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_B2019  CDS  NC_007511  2312518  2314767  -  2250  diguanylate cyclase/phosphodiesterase with GAF sensor  YP_372776  decreased coverage  0.00647394  normal  0.691618  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_B2041  CDS  NC_007511  2338313  2339488  +  1176  LysR family transcriptional regulator  YP_372798  decreased coverage  0.000497451  normal  0.0972832  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_B2053  CDS  NC_007511  2350698  2351675  -  978  type II secretion system protein  YP_372810  decreased coverage  0.00000824726  normal  0.0936478  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_B2085  CDS  NC_007511  2387573  2388550  +  978  LysR family transcriptional regulator  YP_372840  decreased coverage  0.0073681  normal  0.210389  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_B2086  CDS  NC_007511  2388559  2389296  -  738  Short-chain dehydrogenase/reductase SDR  YP_372841  decreased coverage  0.00879174  normal  0.332592  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_B2125  CDS  NC_007511  2436440  2437633  -  1194  tryptophan synthase subunit beta  YP_372880  normal  0.661691  decreased coverage  0.00480263  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_B2126  CDS  NC_007511  2437688  2438389  -  702  N-(5'-phosphoribosyl)anthranilate isomerase  YP_372881  normal  0.639678  decreased coverage  0.00415793  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_B2127  CDS  NC_007511  2438386  2439198  -  813  tRNA pseudouridine synthase A  YP_372882  normal  1  decreased coverage  0.00123964  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_B2128  CDS  NC_007511  2439198  2441606  -  2409  hypothetical protein  YP_372883  normal  1  decreased coverage  0.00604718  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_B2196  CDS  NC_007511  2514062  2514532  +  471  hypothetical protein  YP_372951  decreased coverage  0.00124751  normal  1  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_B2258  CDS  NC_007511  2578915  2580396  -  1482  sigma-54 dependent trancsriptional regulator  YP_373013  normal  0.196111  decreased coverage  0.00780005  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_B2591  CDS  NC_007511  2946060  2946380  +  321  hypothetical protein  YP_373346  decreased coverage  0.00566098  normal  0.951808  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_B2734  CDS  NC_007511  3093960  3095048  -  1089  outer membrane protein (porin)  YP_373489  decreased coverage  0.00626959  normal  1  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_B2886  CDS  NC_007511  3268482  3269354  +  873  response regulator receiver protein  YP_373641  decreased coverage  0.00546187  normal  1  Burkholderia sp. 383  Bacteria 
 
 
-
 
Page 1 of 1    << first  < prev  1  next >  last >>