151 decreased-coverage genes were found for selected organism/s



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Locus tag

Gene type

Replicon accession

From

To

Strand

Gene Length

Product

Protein accession

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Organism name

Kingdom

Coverage Plot

PanDaTox homologs

Experimental validation
RS00236  tRNA  NC_003295  3036735  3036811  77  tRNA-Pro    decreased coverage  4.48409e-07  normal  0.197612  Ralstonia solanacearum GMI1000  Bacteria 
 
 
-
 
RS00403  CDS  NC_003296  654615  656093  1479  transmembrane sensor histidine kinase transcription regulator protein  NP_522085  decreased coverage  0.00328679  normal  Ralstonia solanacearum GMI1000  Bacteria 
 
 
-
 
RS00404  CDS  NC_003296  656223  656834  612  hypothetical protein  NP_522086  decreased coverage  0.000519632  normal  Ralstonia solanacearum GMI1000  Bacteria 
 
 
-
 
RS00407  CDS  NC_003296  658157  659512  1356  putative outer membrane cation efflux system protein  NP_522089  decreased coverage  0.00236087  normal  Ralstonia solanacearum GMI1000  Bacteria 
 
 
-
 
RS00408  CDS  NC_003296  659692  660726  1035  putative cation efflux protein  NP_522090  decreased coverage  0.000967818  normal  Ralstonia solanacearum GMI1000  Bacteria 
 
 
-
 
RS00710  CDS  NC_003296  438682  441366  2685  hypothetical protein  NP_521895  decreased coverage  0.000656351  normal  Ralstonia solanacearum GMI1000  Bacteria 
 
 
-
 
RS00713  CDS  NC_003296  442575  443303  729  transcription regulator protein  NP_521897  decreased coverage  0.000339699  normal  Ralstonia solanacearum GMI1000  Bacteria 
 
 
-
 
RS00714  CDS  NC_003296  443566  444621  1056  porin precursor transmembrane protein  NP_521898  decreased coverage  0.000654265  normal  Ralstonia solanacearum GMI1000  Bacteria 
 
 
-
 
RS00877  CDS  NC_003296  533214  534431  1218  multidrug resistance 1 transmembrane protein  NP_521981  decreased coverage  0.00243064  normal  Ralstonia solanacearum GMI1000  Bacteria 
 
 
-
 
RS01894  CDS  NC_003296  1023965  1025956  1992  hypothetical protein  NP_522374  decreased coverage  0.00344016  normal  0.44222  Ralstonia solanacearum GMI1000  Bacteria 
 
 
-
 
RS01923  CDS  NC_003296  986616  987593  978  putative omega-3 fatty acid desaturase transmembrane protein  NP_522345  normal  decreased coverage  0.00198957  Ralstonia solanacearum GMI1000  Bacteria 
 
 
-
 
RS01924  CDS  NC_003296  986363  986632  270  hypothetical protein  NP_522344  normal  decreased coverage  0.00150472  Ralstonia solanacearum GMI1000  Bacteria 
 
 
-
 
RS01925  CDS  NC_003296  984414  986366  1953  putative aminoacyl-tRNA synthetase protein  NP_522343  normal  decreased coverage  0.00250234  Ralstonia solanacearum GMI1000  Bacteria 
 
 
-
 
RS02167  CDS  NC_003296  2025399  2026736  1338  hypothetical protein  NP_523169  hitchhiker  0.00357357  decreased coverage  0.00909345  Ralstonia solanacearum GMI1000  Bacteria 
 
 
-
 
RS02969  CDS  NC_003296  172296  177428  5133  putative RHS-related protein  NP_521712  decreased coverage  0.00316448  normal  Ralstonia solanacearum GMI1000  Bacteria 
 
 
-
 
RS02991  CDS  NC_003296  150291  150497  207  hypothetical protein  NP_521690  decreased coverage  1.17198e-05  normal  0.646497  Ralstonia solanacearum GMI1000  Bacteria 
 
 
-
 
RS02993  CDS  NC_003296  148360  150198  1839  hypothetical protein  NP_521689  decreased coverage  0.000145899  normal  0.116581  Ralstonia solanacearum GMI1000  Bacteria 
 
 
-
 
RS03051  CDS  NC_003296  1871873  1873942  2070  hypothetical protein  NP_523051  decreased coverage  0.00894237  normal  0.803051  Ralstonia solanacearum GMI1000  Bacteria 
 
 
-
 
RS03462  tRNA  NC_003295  2056202  2056276  75  tRNA-Val    decreased coverage  0.000504437  normal  Ralstonia solanacearum GMI1000  Bacteria 
 
 
-
 
RS03679  CDS  NC_003296  368825  369724  900  transcription regulator protein  NP_521846  decreased coverage  9.06887e-05  normal  0.0907157  Ralstonia solanacearum GMI1000  Bacteria 
 
 
-
 
RS03682  CDS  NC_003296  364483  366114  1632  amino-acid permease transmembrane protein  NP_521843  decreased coverage  0.00632894  normal  0.215553  Ralstonia solanacearum GMI1000  Bacteria 
 
 
-
 
RS03722  CDS  NC_003296  315864  318089  2226  outer membrane hemin receptor signal peptide protein  NP_521805  decreased coverage  0.000281288  normal  0.0836882  Ralstonia solanacearum GMI1000  Bacteria 
 
 
-
 
RS03723  CDS  NC_003296  314699  315841  1143  hemin transport protein  NP_521804  decreased coverage  2.67983e-05  normal  0.178446  Ralstonia solanacearum GMI1000  Bacteria 
 
 
-
 
RS04526  tRNA  NC_003295  1241767  1241842  76  tRNA-Glu    decreased coverage  1.65609e-07  normal  0.307347  Ralstonia solanacearum GMI1000  Bacteria 
 
 
-
 
RS04532  tRNA  NC_003295  1242376  1242452  77  tRNA-Asp    decreased coverage  1.47754e-07  normal  0.326987  Ralstonia solanacearum GMI1000  Bacteria 
 
 
-
 
RS04690  CDS  NC_003296  222745  223527  783  hypothetical protein  NP_521739  decreased coverage  0.000667463  normal  Ralstonia solanacearum GMI1000  Bacteria 
 
 
-
 
RS05182  CDS  NC_003296  308986  312591  3606  putative alpha-amylase-related protein  NP_521802  decreased coverage  0.00237217  normal  0.176867  Ralstonia solanacearum GMI1000  Bacteria 
 
 
-
 
RS05192  CDS  NC_003296  288912  289871  960  putative signal peptide protein  NP_521792  decreased coverage  0.00268581  normal  0.960066  Ralstonia solanacearum GMI1000  Bacteria 
 
 
-
 
RS05194  CDS  NC_003296  286439  287917  1479  putative benzaldehyde dehydrogenase oxidoreductase protein  NP_521790  decreased coverage  0.0026447  normal  0.397505  Ralstonia solanacearum GMI1000  Bacteria 
 
 
-
 
RS05195  CDS  NC_003296  284279  286150  1872  putative phenol-degradative gene regulator transcription regulator protein  NP_521789  decreased coverage  0.000454847  normal  0.120965  Ralstonia solanacearum GMI1000  Bacteria 
 
 
-
 
RS05199  CDS  NC_003296  279370  279834  465  transcription regulator protein  NP_521785  decreased coverage  2.14035e-07  normal  0.0753058  Ralstonia solanacearum GMI1000  Bacteria 
 
 
-
 
RS05202  CDS  NC_003296  276258  277172  915  transcription regulator protein  NP_521782  decreased coverage  1.03081e-05  normal  0.0105317  Ralstonia solanacearum GMI1000  Bacteria 
 
 
-
 
RS05363  CDS  NC_003296  1051148  1052038  891  hypothetical protein  NP_522393  normal  decreased coverage  0.00449707  Ralstonia solanacearum GMI1000  Bacteria 
 
 
-
 
RS05540  CDS  NC_003296  90322  90921  600  hypothetical protein  NP_521642  decreased coverage  0.00436113  normal  Ralstonia solanacearum GMI1000  Bacteria 
 
 
-
 
RS05738  rRNA  NC_003295  1534736  1537553  2818  23S ribosomal RNA    decreased coverage  0.00792768  normal  Ralstonia solanacearum GMI1000  Bacteria 
 
 
-
 
RSc0077  CDS  NC_003295  87475  89910  2436  two component sensor histidine kinase transcription regulator protein  NP_518198  decreased coverage  0.000219775  normal  Ralstonia solanacearum GMI1000  Bacteria 
 
 
-
 
RSc0078  CDS  NC_003295  89947  90666  720  two component response regulator transcription regulator protein  NP_518199  decreased coverage  5.11995e-06  normal  Ralstonia solanacearum GMI1000  Bacteria 
 
 
-
 
RSc0079  CDS  NC_003295  91044  93431  2388  hypothetical protein  NP_518200  decreased coverage  0.000960947  normal  Ralstonia solanacearum GMI1000  Bacteria 
 
 
-
 
RSc0166  CDS  NC_003295  186414  187856  1443  outer membrane channel lipoprotein  NP_518287  decreased coverage  0.00297145  normal  0.496674  Ralstonia solanacearum GMI1000  Bacteria 
 
 
-
 
RSc0396  CDS  NC_003295  423179  424048  870  4-diphosphocytidyl-2-C-methyl-D-erythritol kinase  NP_518517  decreased coverage  3.94449e-05  normal  Ralstonia solanacearum GMI1000  Bacteria 
 
 
-
 
RSc0397  CDS  NC_003295  424067  424696  630  outer membrane lipoprotein LolB  NP_518518  decreased coverage  1.78523e-05  normal  Ralstonia solanacearum GMI1000  Bacteria 
 
 
-
 
RSc0411  CDS  NC_003295  438622  439254  633  hypothetical protein  NP_518532  normal  decreased coverage  0.00714649  Ralstonia solanacearum GMI1000  Bacteria 
 
 
-
 
RSc0412  CDS  NC_003295  439256  439843  588  hypothetical protein  NP_518533  normal  decreased coverage  0.006802  Ralstonia solanacearum GMI1000  Bacteria 
 
 
-
 
RSc0522  CDS  NC_003295  559919  560671  753  putative acyltransferase transmembrane protein  NP_518643  normal  decreased coverage  0.00553836  Ralstonia solanacearum GMI1000  Bacteria 
 
 
-
 
RSc0523  CDS  NC_003295  560668  561267  600  D,D-heptose 1,7-bisphosphate phosphatase  NP_518644  normal  decreased coverage  0.00503738  Ralstonia solanacearum GMI1000  Bacteria 
 
 
-
 
RSc0539  CDS  NC_003295  582836  584458  1623  ATP-dependent RNA helicase protein  NP_518660  decreased coverage  0.00876522  normal  0.882809  Ralstonia solanacearum GMI1000  Bacteria 
 
 
-
 
RSc0691  CDS  NC_003295  739188  740573  1386  putative phosphomannomutase or phosphoglucomutase protein  NP_518812  decreased coverage  0.0002556  normal  Ralstonia solanacearum GMI1000  Bacteria 
 
 
-
 
RSc0692  CDS  NC_003295  740615  741613  999  lipopolysaccharide heptosyltransferase protein  NP_518813  decreased coverage  0.00185807  normal  Ralstonia solanacearum GMI1000  Bacteria 
 
 
-
 
RSc0698  CDS  NC_003295  746423  747217  795  putative transcription regulator protein  NP_518819  decreased coverage  0.00682473  normal  Ralstonia solanacearum GMI1000  Bacteria 
 
 
-
 
RSc0702  CDS  NC_003295  749280  750392  1113  putative NADH-dependent flavin oxidoreductase protein  NP_518823  decreased coverage  0.00458318  normal  Ralstonia solanacearum GMI1000  Bacteria 
 
 
-
 
RSc0774  CDS  NC_003295  818883  819785  903  hypothetical protein  NP_518895  normal  0.22156  decreased coverage  0.00314195  Ralstonia solanacearum GMI1000  Bacteria 
 
 
-
 
RSc0775  CDS  NC_003295  819890  821257  1368  peroxidase/catalase oxidoreductase protein  NP_518896  normal  0.392915  decreased coverage  0.00378616  Ralstonia solanacearum GMI1000  Bacteria 
 
 
-
 
RSc0779  CDS  NC_003295  823489  824331  843  putative thioredoxin protein  NP_518900  normal  0.297357  decreased coverage  0.00262303  Ralstonia solanacearum GMI1000  Bacteria 
 
 
-
 
RSc0780  CDS  NC_003295  824518  826224  1707  long-chain-fatty-acid--CoA ligase  NP_518901  normal  0.324898  decreased coverage  0.00366167  Ralstonia solanacearum GMI1000  Bacteria 
 
 
-
 
RSc0791  CDS  NC_003295  834984  836726  1743  glutaminyl-tRNA synthetase  NP_518912  decreased coverage  0.00535923  normal  Ralstonia solanacearum GMI1000  Bacteria 
 
 
-
 
RSc0873  CDS  NC_003295  905209  909309  4101  putative bacteriophage-related transmembrane protein  NP_518994  normal  decreased coverage  0.00870949  Ralstonia solanacearum GMI1000  Bacteria 
 
 
-
 
RSc0897  CDS  NC_003295  947154  947843  690  hydrolase protein  NP_519018  decreased coverage  0.00554563  normal  0.72661  Ralstonia solanacearum GMI1000  Bacteria 
 
 
-
 
RSc0900  CDS  NC_003295  949379  950035  657  signal peptide protein  NP_519021  decreased coverage  9.37501e-05  normal  0.517414  Ralstonia solanacearum GMI1000  Bacteria 
 
 
-
 
RSc0975  CDS  NC_003295  1022803  1024713  1911  ABC transporter ATP-binding protein  NP_519096  decreased coverage  0.000424481  normal  0.109741  Ralstonia solanacearum GMI1000  Bacteria 
 
 
-
 
RSc0976  CDS  NC_003295  1024879  1026864  1986  DNA topoisomerase IV subunit B  NP_519097  decreased coverage  0.00669448  normal  0.174537  Ralstonia solanacearum GMI1000  Bacteria 
 
 
-
 
RSc1068  CDS  NC_003295  1120323  1121375  1053  beta-hexosaminidase  NP_519189  decreased coverage  0.0051556  normal  0.100642  Ralstonia solanacearum GMI1000  Bacteria 
 
 
-
 
RSc1081  CDS  NC_003295  1137553  1139964  2412  glucosidase protein  NP_519202  decreased coverage  0.00242883  normal  Ralstonia solanacearum GMI1000  Bacteria 
 
 
-
 
RSc1082  CDS  NC_003295  1140010  1141194  1185  porin transmembrane protein  NP_519203  decreased coverage  5.50491e-05  normal  Ralstonia solanacearum GMI1000  Bacteria 
 
 
-
 
RSc1083  CDS  NC_003295  1141243  1142214  972  hypothetical protein  NP_519204  decreased coverage  3.16766e-05  normal  Ralstonia solanacearum GMI1000  Bacteria 
 
 
-
 
RSc1110  CDS  NC_003295  1166672  1167592  921  transcriptional regulatory DNA-binding transcription regulator protein  NP_519231  decreased coverage  4.88361e-06  normal  0.138015  Ralstonia solanacearum GMI1000  Bacteria 
 
 
-
 
RSc1171  CDS  NC_003295  1229452  1230702  1251  aspartate kinase  NP_519292  decreased coverage  0.000593821  normal  0.758494  Ralstonia solanacearum GMI1000  Bacteria 
 
 
-
 
RSc1173  CDS  NC_003295  1232165  1234042  1878  substrate-binding periplasmic (PBP) ABC transporter protein  NP_519294  decreased coverage  0.000592479  normal  0.415148  Ralstonia solanacearum GMI1000  Bacteria 
 
 
-
 
RSc1176  CDS  NC_003295  1236244  1237899  1656  ABC transporter ATP-binding protein  NP_519297  decreased coverage  0.000161898  normal  0.341996  Ralstonia solanacearum GMI1000  Bacteria 
 
 
-
 
RSc1180  CDS  NC_003295  1242552  1243898  1347  inner membrane transmembrane protein  NP_519301  decreased coverage  7.81542e-06  normal  0.19952  Ralstonia solanacearum GMI1000  Bacteria 
 
 
-
 
RSc1181  CDS  NC_003295  1243885  1245681  1797  inner membrane transmembrane protein  NP_519302  decreased coverage  4.39298e-05  normal  0.187558  Ralstonia solanacearum GMI1000  Bacteria 
 
 
-
 
RSc1220  CDS  NC_003295  1290132  1290371  240  RNA-binding protein Hfq  NP_519341  decreased coverage  0.00041911  normal  Ralstonia solanacearum GMI1000  Bacteria 
 
 
-
 
RSc1222  CDS  NC_003295  1291796  1293139  1344  hypothetical protein  NP_519343  decreased coverage  0.0015724  normal  Ralstonia solanacearum GMI1000  Bacteria 
 
 
-
 
RSc1223  CDS  NC_003295  1293153  1294067  915  putative serine protease transmembrane protein  NP_519344  decreased coverage  0.00070103  normal  Ralstonia solanacearum GMI1000  Bacteria 
 
 
-
 
RSc1226  CDS  NC_003295  1295663  1297003  1341  adenylosuccinate synthetase  NP_519347  decreased coverage  0.000419397  normal  Ralstonia solanacearum GMI1000  Bacteria 
 
 
-
 
RSc1228  CDS  NC_003295  1298192  1300807  2616  exoribonuclease RNase R  NP_519349  decreased coverage  0.00057752  normal  Ralstonia solanacearum GMI1000  Bacteria 
 
 
-
 
RSc1287  CDS  NC_003295  1369867  1370355  489  hypothetical protein  NP_519408  decreased coverage  0.00293096  normal  Ralstonia solanacearum GMI1000  Bacteria 
 
 
-
 
RSc1421  CDS  NC_003295  1520988  1523375  2388  phosphoenolpyruvate synthase  NP_519542  normal  0.0887708  decreased coverage  0.00267655  Ralstonia solanacearum GMI1000  Bacteria 
 
 
-
 
RSc1422  CDS  NC_003295  1523522  1523950  429  hypothetical protein  NP_519543  normal  0.14104  decreased coverage  0.00104227  Ralstonia solanacearum GMI1000  Bacteria 
 
 
-
 
RSc1423  CDS  NC_003295  1523975  1524901  927  putative transmembrane protein  NP_519544  normal  0.169777  decreased coverage  0.00134863  Ralstonia solanacearum GMI1000  Bacteria 
 
 
-
 
RSc1498  CDS  NC_003295  1603642  1604232  591  hypothetical protein  NP_519619  decreased coverage  0.00731295  normal  Ralstonia solanacearum GMI1000  Bacteria 
 
 
-
 
RSc1603  CDS  NC_003295  1722543  1724327  1785  dihydrolipoamide dehydrogenase  NP_519724  decreased coverage  0.00100727  normal  0.394901  Ralstonia solanacearum GMI1000  Bacteria 
 
 
-
 
RSc1705  CDS  NC_003295  1821305  1822462  1158  hypothetical protein  NP_519826  decreased coverage  0.00646278  normal  0.0869394  Ralstonia solanacearum GMI1000  Bacteria 
 
 
-
 
RSc1712  CDS  NC_003295  1829064  1830338  1275  ATP-dependent protease ATP-binding subunit ClpX  NP_519833  decreased coverage  0.00711011  normal  0.0237763  Ralstonia solanacearum GMI1000  Bacteria 
 
 
-
 
RSc1872  CDS  NC_003295  2056345  2057073  729  DNA polymerase III subunit epsilon  NP_519993  decreased coverage  0.000816139  normal  Ralstonia solanacearum GMI1000  Bacteria 
 
 
-
 
RSc1889  CDS  NC_003295  2074034  2076331  2298  transmembrane isoquinoline 1-oxidoreductase subunit beta oxidoreductase protein  NP_520010  decreased coverage  0.0091612  normal  0.778364  Ralstonia solanacearum GMI1000  Bacteria 
 
 
-
 
RSc1892  CDS  NC_003295  2077977  2078699  723  two-component system response regulator transcription regulator protein  NP_520013  decreased coverage  0.00502317  normal  Ralstonia solanacearum GMI1000  Bacteria 
 
 
-
 
RSc1904  CDS  NC_003295  2089949  2090197  249  putative transcriptional activator transcription regulator protein  NP_520025  decreased coverage  0.00444501  normal  Ralstonia solanacearum GMI1000  Bacteria 
 
 
-
 
RSc1905  CDS  NC_003295  2090194  2090367  174  hypothetical protein  NP_520026  decreased coverage  0.00364579  normal  Ralstonia solanacearum GMI1000  Bacteria 
 
 
-
 
RSc1983  CDS  NC_003295  2157333  2158544  1212  tryptophan synthase subunit beta  NP_520104  normal  decreased coverage  0.00755336  Ralstonia solanacearum GMI1000  Bacteria 
 
 
-
 
RSc2111  CDS  NC_003295  2286111  2287019  909  dihydrodipicolinate synthase  NP_520232  decreased coverage  0.000964541  normal  0.786105  Ralstonia solanacearum GMI1000  Bacteria 
 
 
-
 
RSc2141  CDS  NC_003295  2323951  2324649  699  hypothetical protein  NP_520262  decreased coverage  0.00191152  normal  Ralstonia solanacearum GMI1000  Bacteria 
 
 
-
 
RSc2144  CDS  NC_003295  2326547  2327872  1326  sugar-binding periplasmic signal peptide protein  NP_520265  decreased coverage  0.000125903  normal  Ralstonia solanacearum GMI1000  Bacteria 
 
 
-
 
RSc2145  CDS  NC_003295  2327924  2329279  1356  putative tagatose 6-phosphate kinase protein  NP_520266  decreased coverage  0.000526082  normal  Ralstonia solanacearum GMI1000  Bacteria 
 
 
-
 
RSc2146  CDS  NC_003295  2329267  2330223  957  fructokinase protein  NP_520267  decreased coverage  4.04752e-06  normal  Ralstonia solanacearum GMI1000  Bacteria 
 
 
-
 
RSc2147  CDS  NC_003295  2330228  2330998  771  sorbitol dehydrogenase  NP_520268  decreased coverage  2.07425e-05  normal  Ralstonia solanacearum GMI1000  Bacteria 
 
 
-
 
RSc2157  CDS  NC_003295  2340180  2341151  972  protein kinase  NP_520278  decreased coverage  0.000803751  normal  Ralstonia solanacearum GMI1000  Bacteria 
 
 
-
 
RSc2159  CDS  NC_003295  2342256  2342972  717  ribonuclease PH  NP_520280  decreased coverage  0.0019254  normal  Ralstonia solanacearum GMI1000  Bacteria 
 
 
-
 
RSc2160  CDS  NC_003295  2342984  2343589  606  putative deoxyribonucleotide triphosphate pyrophosphatase  NP_520281  decreased coverage  0.00385759  normal  Ralstonia solanacearum GMI1000  Bacteria 
 
 
-
 
RSc2161  CDS  NC_003295  2343596  2344870  1275  coproporphyrinogen III oxidase  NP_520282  decreased coverage  0.0050137  normal  Ralstonia solanacearum GMI1000  Bacteria 
 
 
-
 
RSc2251  CDS  NC_003295  2443255  2444616  1362  3-carboxy-cis,cis-muconate cycloisomerase  NP_520372  decreased coverage  0.001838  normal  Ralstonia solanacearum GMI1000  Bacteria 
 
 
-
 
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