62 decreased-coverage genes were found for selected organism/s



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Locus tag

Gene type

Replicon accession

From

To

Strand

Gene Length

Product

Protein accession

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Organism name

Kingdom

Coverage Plot

PanDaTox homologs

Experimental validation
Meso_0120  CDS  NC_008254  147896  148333  438  hypothetical protein  YP_672690  decreased coverage  4.55639e-08  n/a    Chelativorans sp. BNC1  Bacteria 
 
 
 
Meso_0181  CDS  NC_008254  226218  226754  537  stress responsive alpha-beta barrel  YP_672751  decreased coverage  0.00134163  n/a    Chelativorans sp. BNC1  Bacteria 
 
 
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Meso_0422  CDS  NC_008254  465179  466690  1512  histidyl-tRNA synthetase  YP_672991  decreased coverage  0.00502968  n/a    Chelativorans sp. BNC1  Bacteria 
 
 
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Meso_0560  CDS  NC_008254  618177  619805  1629  ABC transporter related  YP_673127  decreased coverage  0.000861738  n/a    Chelativorans sp. BNC1  Bacteria 
 
 
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Meso_0747  CDS  NC_008254  822517  823269  753  Surfeit locus 1  YP_673312  decreased coverage  0.00346081  n/a    Chelativorans sp. BNC1  Bacteria 
 
 
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Meso_0809  CDS  NC_008254  897622  898455  834  binding-protein-dependent transport systems inner membrane component  YP_673374  decreased coverage  0.00650739  n/a    Chelativorans sp. BNC1  Bacteria 
 
 
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Meso_0824  CDS  NC_008254  912193  913005  813  aspartate dehydrogenase  YP_673389  decreased coverage  0.00374726  n/a    Chelativorans sp. BNC1  Bacteria 
 
 
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Meso_0872  CDS  NC_008254  966238  966600  363  hypothetical protein  YP_673437  decreased coverage  0.00697579  n/a    Chelativorans sp. BNC1  Bacteria 
 
 
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Meso_1039  CDS  NC_008254  1141489  1141758  270  hypothetical protein  YP_673601  decreased coverage  0.000558059  n/a    Chelativorans sp. BNC1  Bacteria 
 
 
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Meso_1071  CDS  NC_008254  1174510  1175619  1110  mandelate racemase/muconate lactonizing-like protein  YP_673633  decreased coverage  0.001504  n/a    Chelativorans sp. BNC1  Bacteria 
 
 
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Meso_1247  CDS  NC_008254  1342025  1342375  351  hypothetical protein  YP_673808  decreased coverage  8.7542e-06  n/a    Chelativorans sp. BNC1  Bacteria 
 
 
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Meso_1336  CDS  NC_008254  1430039  1430743  705  peptidase S14, ClpP  YP_673897  decreased coverage  0.00195664  n/a    Chelativorans sp. BNC1  Bacteria 
 
 
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Meso_1463  CDS  NC_008254  1560766  1562484  1719  NAD synthetase  YP_674024  decreased coverage  0.00661124  n/a    Chelativorans sp. BNC1  Bacteria 
 
 
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Meso_1497  CDS  NC_008254  1593811  1594293  483  BA14K-like  YP_674058  decreased coverage  0.00686044  n/a    Chelativorans sp. BNC1  Bacteria 
 
 
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Meso_1503  CDS  NC_008254  1601118  1601579  462  hypothetical protein  YP_674064  decreased coverage  0.00852854  n/a    Chelativorans sp. BNC1  Bacteria 
 
 
-
 
Meso_1579  CDS  NC_008254  1699344  1700570  1227  rare lipoprotein A  YP_674139  decreased coverage  0.00357969  n/a    Chelativorans sp. BNC1  Bacteria 
 
 
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Meso_1665  CDS  NC_008254  1789805  1790110  306  30S ribosomal protein S14  YP_674225  decreased coverage  0.0077571  n/a    Chelativorans sp. BNC1  Bacteria 
 
 
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Meso_1666  CDS  NC_008254  1790139  1790696  558  50S ribosomal protein L5  YP_674226  decreased coverage  0.00489085  n/a    Chelativorans sp. BNC1  Bacteria 
 
 
-
 
Meso_1667  CDS  NC_008254  1790689  1791003  315  50S ribosomal protein L24  YP_674227  decreased coverage  0.00304946  n/a    Chelativorans sp. BNC1  Bacteria 
 
 
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Meso_1679  CDS  NC_008254  1796327  1796635  309  30S ribosomal protein S10  YP_674239  decreased coverage  0.00213683  n/a    Chelativorans sp. BNC1  Bacteria 
 
 
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Meso_1690  CDS  NC_008254  1806973  1808040  1068  basic membrane lipoprotein  YP_674250  decreased coverage  0.00161056  n/a    Chelativorans sp. BNC1  Bacteria 
 
 
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Meso_1705  CDS  NC_008254  1825362  1826066  705  hypothetical protein  YP_674265  decreased coverage  0.00122818  n/a    Chelativorans sp. BNC1  Bacteria 
 
 
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Meso_1715  CDS  NC_008254  1839571  1840038  468  biotin carboxyl carrier protein  YP_674275  decreased coverage  0.00621538  n/a    Chelativorans sp. BNC1  Bacteria 
 
 
-
 
Meso_1757  CDS  NC_008254  1877418  1878668  1251  permease YjgP/YjgQ  YP_674316  decreased coverage  0.00499873  n/a    Chelativorans sp. BNC1  Bacteria 
 
 
-
 
Meso_1835  CDS  NC_008254  1970669  1972360  1692  extracellular solute-binding protein  YP_674393  decreased coverage  0.00561184  n/a    Chelativorans sp. BNC1  Bacteria 
 
 
-
 
Meso_1865  CDS  NC_008254  2004250  2005308  1059  extracellular solute-binding protein  YP_674423  decreased coverage  0.00327165  n/a    Chelativorans sp. BNC1  Bacteria 
 
 
-
 
Meso_1902  CDS  NC_008254  2037293  2038561  1269  phage integrase  YP_674460  decreased coverage  1.83596e-05  n/a    Chelativorans sp. BNC1  Bacteria 
 
 
-
 
Meso_1920  CDS  NC_008254  2054565  2055716  1152  secretion protein HlyD  YP_674478  decreased coverage  0.00498247  n/a    Chelativorans sp. BNC1  Bacteria 
 
 
-
 
Meso_1955  CDS  NC_008254  2096134  2097138  1005  D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding  YP_674513  decreased coverage  0.00291044  n/a    Chelativorans sp. BNC1  Bacteria 
 
 
-
 
Meso_2001  CDS  NC_008254  2146237  2147895  1659  cell division protein FtsZ  YP_674559  decreased coverage  0.000263302  n/a    Chelativorans sp. BNC1  Bacteria 
 
 
-
 
Meso_2314  CDS  NC_008254  2468938  2469174  237  hypothetical protein  YP_674867  decreased coverage  0.00431798  n/a    Chelativorans sp. BNC1  Bacteria 
 
 
-
 
Meso_2315  CDS  NC_008254  2469178  2470368  1191  conjugation TrbI-like protein  YP_674868  decreased coverage  0.00715823  n/a    Chelativorans sp. BNC1  Bacteria 
 
 
-
 
Meso_2389  CDS  NC_008254  2543953  2544942  990  hypothetical protein  YP_674939  decreased coverage  2.16115e-07  n/a    Chelativorans sp. BNC1  Bacteria 
 
 
 
Meso_2408  CDS  NC_008254  2566071  2567588  1518  extracellular solute-binding protein  YP_674958  decreased coverage  0.000286915  n/a    Chelativorans sp. BNC1  Bacteria 
 
 
-
 
Meso_2416  CDS  NC_008254  2587845  2589218  1374  hypothetical protein  YP_674965  decreased coverage  0.00276802  n/a    Chelativorans sp. BNC1  Bacteria 
 
 
-
 
Meso_2440  CDS  NC_008254  2615611  2616912  1302  WD-40 repeat-containing protein  YP_674989  decreased coverage  0.00410064  n/a    Chelativorans sp. BNC1  Bacteria 
 
 
-
 
Meso_2450  CDS  NC_008254  2626573  2627169  597  4Fe-4S ferredoxin, iron-sulfur binding  YP_674999  decreased coverage  0.00418967  n/a    Chelativorans sp. BNC1  Bacteria 
 
 
-
 
Meso_2483  CDS  NC_008254  2661220  2662080  861  putative Sir2-like transcriptional silencer protein  YP_675032  decreased coverage  0.000992077  n/a    Chelativorans sp. BNC1  Bacteria 
 
 
-
 
Meso_2749  CDS  NC_008254  2995496  2996386  891  N-formylglutamate amidohydrolase  YP_675291  decreased coverage  0.00022446  n/a    Chelativorans sp. BNC1  Bacteria 
 
 
-
 
Meso_2960  CDS  NC_008254  3220964  3221344  381  carboxymuconolactone decarboxylase  YP_675497  decreased coverage  0.00839552  n/a    Chelativorans sp. BNC1  Bacteria 
 
 
-
 
Meso_3156  CDS  NC_008254  3425038  3425964  927  RNA polymerase factor sigma-32  YP_675693  decreased coverage  0.00251516  n/a    Chelativorans sp. BNC1  Bacteria 
 
 
-
 
Meso_3379  CDS  NC_008254  3653945  3654517  573  CarD family transcriptional regulator  YP_675915  decreased coverage  8.18177e-08  n/a    Chelativorans sp. BNC1  Bacteria 
 
 
 
Meso_3548  CDS  NC_008254  3823127  3824203  1077  malate/L-lactate dehydrogenase  YP_676084  decreased coverage  0.0039901  n/a    Chelativorans sp. BNC1  Bacteria 
 
 
-
 
Meso_3549    NC_008254  3824200  3824658  459      decreased coverage  0.00100652  n/a    Chelativorans sp. BNC1  Bacteria 
 
 
-
 
Meso_3606  CDS  NC_008254  3889257  3890966  1710  30S ribosomal protein S1  YP_676140  decreased coverage  0.000377018  n/a    Chelativorans sp. BNC1  Bacteria 
 
 
-
 
Meso_3619  CDS  NC_008254  3905010  3905753  744  short-chain dehydrogenase/reductase SDR  YP_676153  decreased coverage  0.00790972  n/a    Chelativorans sp. BNC1  Bacteria 
 
 
-
 
Meso_3714  CDS  NC_008254  4008652  4009161  510  tripartite ATP-independent periplasmic transporter DctQ  YP_676247  decreased coverage  5.56878e-06  n/a    Chelativorans sp. BNC1  Bacteria 
 
 
 
Meso_3817  CDS  NC_008254  4125524  4125922  399  hypothetical protein  YP_676349  decreased coverage  0.00334235  n/a    Chelativorans sp. BNC1  Bacteria 
 
 
-
 
Meso_3849  CDS  NC_008254  4150685  4152679  1995  conjugal transfer coupling protein TraG  YP_676381  decreased coverage  0.00986433  n/a    Chelativorans sp. BNC1  Bacteria 
 
 
-
 
Meso_3855  CDS  NC_008254  4157568  4158329  762  conjugal transfer protein TrbJ  YP_676387  decreased coverage  0.00466031  n/a    Chelativorans sp. BNC1  Bacteria 
 
 
-
 
Meso_3858  CDS  NC_008254  4159973  4160662  690  conjugal transfer protein TrbF  YP_676390  decreased coverage  0.00683431  n/a    Chelativorans sp. BNC1  Bacteria 
 
 
-
 
Meso_3891  CDS  NC_008254  4194949  4195413  465  twin-arginine translocation pathway signal  YP_676423  decreased coverage  0.00492832  n/a    Chelativorans sp. BNC1  Bacteria 
 
 
-
 
Meso_3892  CDS  NC_008254  4195450  4195899  450  MerR family transcriptional regulator  YP_676424  decreased coverage  0.00526993  n/a    Chelativorans sp. BNC1  Bacteria 
 
 
-
 
Meso_4013  CDS  NC_008254  4318707  4319870  1164  coproporphyrinogen III oxidase  YP_676545  decreased coverage  0.00338322  n/a    Chelativorans sp. BNC1  Bacteria 
 
 
-
 
Meso_4255  CDS  NC_008242  158496  159530  1035  extracellular solute-binding protein  YP_665876  decreased coverage  1.72827e-06  n/a    Chelativorans sp. BNC1  Bacteria 
 
 
-
 
Meso_4303  CDS  NC_008242  201733  201942  210  uncharacterized protein SCO1/SenC/PrrC  YP_665920  decreased coverage  0.00167923  n/a    Chelativorans sp. BNC1  Bacteria 
 
 
-
 
Meso_4329  CDS  NC_008242  229205  230404  1200  hypothetical protein  YP_665946  decreased coverage  0.00310641  n/a    Chelativorans sp. BNC1  Bacteria 
 
 
-
 
Meso_4359  CDS  NC_008242  260897  261166  270  hypothetical protein  YP_665976  decreased coverage  0.00335359  n/a    Chelativorans sp. BNC1  Bacteria 
 
 
-
 
Meso_4399  CDS  NC_008242  300274  301917  1644  hypothetical protein  YP_666013  decreased coverage  0.0037899  n/a    Chelativorans sp. BNC1  Bacteria 
 
 
-
 
Meso_4456  CDS  NC_008243  18907  19920  1014  extracellular solute-binding protein  YP_666067  decreased coverage  0.00193533  n/a    Chelativorans sp. BNC1  Bacteria 
 
 
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Meso_4533  CDS  NC_008243  95059  96213  1155  mandelate racemase/muconate lactonizing-like protein  YP_666141  decreased coverage  0.00790465  n/a    Chelativorans sp. BNC1  Bacteria 
 
 
-
 
Meso_4572  CDS  NC_008244  9409  10896  1488  hypothetical protein  YP_666174  decreased coverage  0.00813276  n/a    Chelativorans sp. BNC1  Bacteria 
 
 
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