67 decreased-coverage genes were found for selected organism/s



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Locus tag

Gene type

Replicon accession

From

To

Strand

Gene Length

Product

Protein accession

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Organism name

Kingdom

Coverage Plot

PanDaTox homologs

Experimental validation
Rxyl_0083  CDS  NC_008148  86899  87915  1017  twin-arginine translocation pathway signal  YP_642876  decreased coverage  3.23423e-06  n/a    Rubrobacter xylanophilus DSM 9941  Bacteria 
 
 
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Rxyl_0192  CDS  NC_008148  193695  195083  1389  glycine cleavage T protein (aminomethyl transferase)  YP_642982  decreased coverage  0.000184996  n/a    Rubrobacter xylanophilus DSM 9941  Bacteria 
 
 
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Rxyl_0208  CDS  NC_008148  209161  209850  690  GntR family transcriptional regulator  YP_642998  decreased coverage  0.00667385  n/a    Rubrobacter xylanophilus DSM 9941  Bacteria 
 
 
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Rxyl_0209  CDS  NC_008148  209961  211313  1353  glycine cleavage T protein (aminomethyl transferase)  YP_642999  decreased coverage  0.000425405  n/a    Rubrobacter xylanophilus DSM 9941  Bacteria 
 
 
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Rxyl_0237    NC_008148  243982  245066  1085      decreased coverage  0.0087407  n/a    Rubrobacter xylanophilus DSM 9941  Bacteria 
 
 
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Rxyl_0371  CDS  NC_008148  397682  399316  1635  AMP-dependent synthetase and ligase  YP_643159  decreased coverage  0.00566676  n/a    Rubrobacter xylanophilus DSM 9941  Bacteria 
 
 
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Rxyl_0389  CDS  NC_008148  417636  418268  633  hypothetical protein  YP_643176  decreased coverage  0.00614541  n/a    Rubrobacter xylanophilus DSM 9941  Bacteria 
 
 
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Rxyl_0390  CDS  NC_008148  418416  419072  657  acyl-phosphate glycerol-3-phosphate acyltransferase  YP_643177  decreased coverage  0.00853574  n/a    Rubrobacter xylanophilus DSM 9941  Bacteria 
 
 
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Rxyl_0470  CDS  NC_008148  506265  507587  1323  aminomethyltransferase  YP_643256  decreased coverage  1.73433e-05  n/a    Rubrobacter xylanophilus DSM 9941  Bacteria 
 
 
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Rxyl_0528  CDS  NC_008148  557803  558756  954  beta-lactamase-like protein  YP_643314  decreased coverage  0.000304282  n/a    Rubrobacter xylanophilus DSM 9941  Bacteria 
 
 
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Rxyl_0647  CDS  NC_008148  681145  682233  1089  nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase  YP_643429  decreased coverage  0.00417708  n/a    Rubrobacter xylanophilus DSM 9941  Bacteria 
 
 
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Rxyl_0650  CDS  NC_008148  683905  685005  1101  L-threonine O-3-phosphate decarboxylase  YP_643432  decreased coverage  0.000240372  n/a    Rubrobacter xylanophilus DSM 9941  Bacteria 
 
 
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Rxyl_0651  CDS  NC_008148  685005  685625  621  phosphoglycerate mutase  YP_643433  decreased coverage  0.00089207  n/a    Rubrobacter xylanophilus DSM 9941  Bacteria 
 
 
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Rxyl_0675  CDS  NC_008148  707968  708459  492  heat shock protein Hsp20  YP_643457  decreased coverage  5.58694e-07  n/a    Rubrobacter xylanophilus DSM 9941  Bacteria 
 
 
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Rxyl_0719  CDS  NC_008148  752585  753637  1053  NAD-dependent epimerase/dehydratase  YP_643501  decreased coverage  0.00305624  n/a    Rubrobacter xylanophilus DSM 9941  Bacteria 
 
 
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Rxyl_0720  CDS  NC_008148  753634  754803  1170  alcohol dehydrogenase GroES-like protein  YP_643502  decreased coverage  0.00145968  n/a    Rubrobacter xylanophilus DSM 9941  Bacteria 
 
 
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Rxyl_0832  CDS  NC_008148  867803  869236  1434  L-fucose isomerase  YP_643612  decreased coverage  0.0071314  n/a    Rubrobacter xylanophilus DSM 9941  Bacteria 
 
 
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Rxyl_0872  CDS  NC_008148  912890  914515  1626  extracellular solute-binding protein  YP_643651  decreased coverage  0.00426332  n/a    Rubrobacter xylanophilus DSM 9941  Bacteria 
 
 
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Rxyl_0914  CDS  NC_008148  954644  954961  318  septum formation initiator  YP_643693  decreased coverage  0.000205593  n/a    Rubrobacter xylanophilus DSM 9941  Bacteria 
 
 
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Rxyl_0921  CDS  NC_008148  959618  960808  1191  pyruvate ferredoxin oxidoreductase, beta subunit  YP_643700  decreased coverage  4.13335e-06  n/a    Rubrobacter xylanophilus DSM 9941  Bacteria 
 
 
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Rxyl_0922  CDS  NC_008148  960882  961391  510  hypothetical protein  YP_643701  decreased coverage  2.02339e-07  n/a    Rubrobacter xylanophilus DSM 9941  Bacteria 
 
 
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Rxyl_0944  CDS  NC_008148  981834  983417  1584  thiamine pyrophosphate enzyme-like TPP-binding protein  YP_643723  decreased coverage  0.000374916  n/a    Rubrobacter xylanophilus DSM 9941  Bacteria 
 
 
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Rxyl_0945  CDS  NC_008148  983441  984487  1047  LacI family transcription regulator  YP_643724  decreased coverage  6.57853e-05  n/a    Rubrobacter xylanophilus DSM 9941  Bacteria 
 
 
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Rxyl_0960  CDS  NC_008148  997856  998917  1062  phospho-2-dehydro-3-deoxyheptonate aldolase  YP_643739  decreased coverage  0.00600689  n/a    Rubrobacter xylanophilus DSM 9941  Bacteria 
 
 
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Rxyl_1006  CDS  NC_008148  1043603  1043911  309  hypothetical protein  YP_643784  decreased coverage  2.02339e-07  n/a    Rubrobacter xylanophilus DSM 9941  Bacteria 
 
 
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Rxyl_1007  CDS  NC_008148  1043912  1044280  369  hypothetical protein  YP_643785  decreased coverage  2.69149e-07  n/a    Rubrobacter xylanophilus DSM 9941  Bacteria 
 
 
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Rxyl_1179  CDS  NC_008148  1204960  1206987  2028  hypothetical protein  YP_643957  decreased coverage  0.00516049  n/a    Rubrobacter xylanophilus DSM 9941  Bacteria 
 
 
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Rxyl_1311  CDS  NC_008148  1335753  1336919  1167  tyrosyl-tRNA synthetase  YP_644087  decreased coverage  7.63452e-05  n/a    Rubrobacter xylanophilus DSM 9941  Bacteria 
 
 
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Rxyl_1359  CDS  NC_008148  1385783  1388431  2649  alanyl-tRNA synthetase  YP_644134  decreased coverage  0.00180995  n/a    Rubrobacter xylanophilus DSM 9941  Bacteria 
 
 
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Rxyl_1383  CDS  NC_008148  1406647  1407894  1248  3-oxoacyl-[acyl-carrier-protein] synthase II  YP_644158  decreased coverage  0.00599775  n/a    Rubrobacter xylanophilus DSM 9941  Bacteria 
 
 
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Rxyl_1418  CDS  NC_008148  1438068  1440128  2061  polynucleotide phosphorylase/polyadenylase  YP_644192  decreased coverage  0.00293848  n/a    Rubrobacter xylanophilus DSM 9941  Bacteria 
 
 
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Rxyl_1438  CDS  NC_008148  1460882  1462195  1314  small GTP-binding protein domain-containing protein  YP_644212  decreased coverage  0.000421865  n/a    Rubrobacter xylanophilus DSM 9941  Bacteria 
 
 
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Rxyl_1462  CDS  NC_008148  1482631  1483158  528  hypothetical protein  YP_644236  decreased coverage  0.000805529  n/a    Rubrobacter xylanophilus DSM 9941  Bacteria 
 
 
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Rxyl_1480  CDS  NC_008148  1500747  1501664  918  aspartate carbamoyltransferase  YP_644254  decreased coverage  0.00533036  n/a    Rubrobacter xylanophilus DSM 9941  Bacteria 
 
 
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Rxyl_1498  CDS  NC_008148  1517460  1519130  1671  peptidoglycan glycosyltransferase  YP_644272  decreased coverage  0.00439152  n/a    Rubrobacter xylanophilus DSM 9941  Bacteria 
 
 
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Rxyl_1499  CDS  NC_008148  1519156  1519572  417  hypothetical protein  YP_644273  decreased coverage  0.00136966  n/a    Rubrobacter xylanophilus DSM 9941  Bacteria 
 
 
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Rxyl_1503  CDS  NC_008148  1523189  1524145  957  deoxyguanosinetriphosphate triphosphohydrolase-like protein  YP_644277  decreased coverage  0.00271106  n/a    Rubrobacter xylanophilus DSM 9941  Bacteria 
 
 
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Rxyl_1576  CDS  NC_008148  1601462  1602403  942  methylenetetrahydrofolate reductase  YP_644350  decreased coverage  0.00629171  n/a    Rubrobacter xylanophilus DSM 9941  Bacteria 
 
 
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Rxyl_1577  CDS  NC_008148  1602582  1602968  387  4-carboxymuconolactone decarboxylase  YP_644351  decreased coverage  0.00107459  n/a    Rubrobacter xylanophilus DSM 9941  Bacteria 
 
 
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Rxyl_1578  CDS  NC_008148  1602965  1603750  786  3-oxoadipate enol-lactonase  YP_644352  decreased coverage  0.000336054  n/a    Rubrobacter xylanophilus DSM 9941  Bacteria 
 
 
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Rxyl_1638  CDS  NC_008148  1663772  1665313  1542  F0F1 ATP synthase subunit beta  YP_644411  decreased coverage  0.0091219  n/a    Rubrobacter xylanophilus DSM 9941  Bacteria 
 
 
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Rxyl_1670  CDS  NC_008148  1689693  1690730  1038  putative ammonia monooxygenase-like protein  YP_644443  decreased coverage  0.00625277  n/a    Rubrobacter xylanophilus DSM 9941  Bacteria 
 
 
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Rxyl_1689  CDS  NC_008148  1711679  1713589  1911  propionyl-CoA synthetase  YP_644461  decreased coverage  0.000127963  n/a    Rubrobacter xylanophilus DSM 9941  Bacteria 
 
 
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Rxyl_1705  CDS  NC_008148  1732032  1733126  1095  hypothetical protein  YP_644477  decreased coverage  4.37403e-06  n/a    Rubrobacter xylanophilus DSM 9941  Bacteria 
 
 
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Rxyl_1706  CDS  NC_008148  1733302  1733646  345  hypothetical protein  YP_644478  decreased coverage  3.6824e-07  n/a    Rubrobacter xylanophilus DSM 9941  Bacteria 
 
 
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Rxyl_1707  CDS  NC_008148  1733643  1734809  1167  butyryl-CoA dehydrogenase  YP_644479  decreased coverage  8.36039e-06  n/a    Rubrobacter xylanophilus DSM 9941  Bacteria 
 
 
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Rxyl_1735  CDS  NC_008148  1764855  1765115  261  HPrNtr domain-containing protein  YP_644507  decreased coverage  0.00241683  n/a    Rubrobacter xylanophilus DSM 9941  Bacteria 
 
 
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Rxyl_1743  CDS  NC_008148  1772877  1773680  804  ABC-2 type transporter  YP_644515  decreased coverage  0.00781757  n/a    Rubrobacter xylanophilus DSM 9941  Bacteria 
 
 
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Rxyl_1897  CDS  NC_008148  1920763  1922100  1338  hypothetical protein  YP_644659  decreased coverage  0.000695658  n/a    Rubrobacter xylanophilus DSM 9941  Bacteria 
 
 
-
 
Rxyl_1898  CDS  NC_008148  1922280  1923071  792  GntR family transcriptional regulator  YP_644660  decreased coverage  1.97182e-05  n/a    Rubrobacter xylanophilus DSM 9941  Bacteria 
 
 
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Rxyl_1978  CDS  NC_008148  1999235  2000152  918  porphobilinogen deaminase  YP_644737  decreased coverage  0.000417837  n/a    Rubrobacter xylanophilus DSM 9941  Bacteria 
 
 
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Rxyl_1979  CDS  NC_008148  2000152  2001420  1269  glutamyl-tRNA reductase  YP_644738  decreased coverage  0.001246  n/a    Rubrobacter xylanophilus DSM 9941  Bacteria 
 
 
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Rxyl_2097  CDS  NC_008148  2124942  2125892  951  ornithine cyclodeaminase  YP_644853  decreased coverage  0.00174569  n/a    Rubrobacter xylanophilus DSM 9941  Bacteria 
 
 
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Rxyl_2155  CDS  NC_008148  2168011  2168628  618  50S ribosomal protein L3P  YP_644911  decreased coverage  0.00587716  n/a    Rubrobacter xylanophilus DSM 9941  Bacteria 
 
 
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Rxyl_2165  CDS  NC_008148  2181993  2182685  693  50S ribosomal protein L1P  YP_644921  decreased coverage  0.0086429  n/a    Rubrobacter xylanophilus DSM 9941  Bacteria 
 
 
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Rxyl_2171  CDS  NC_008148  2186026  2186535  510  hypothetical protein  YP_644927  decreased coverage  0.00990359  n/a    Rubrobacter xylanophilus DSM 9941  Bacteria 
 
 
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Rxyl_2256  CDS  NC_008148  2267216  2268502  1287  D-amino acid dehydrogenase small subunit  YP_644998  decreased coverage  6.81381e-05  n/a    Rubrobacter xylanophilus DSM 9941  Bacteria 
 
 
-
 
Rxyl_2391  CDS  NC_008148  2403132  2403461  330  hypothetical protein  YP_645131  decreased coverage  0.00527426  n/a    Rubrobacter xylanophilus DSM 9941  Bacteria 
 
 
-
 
Rxyl_2406  CDS  NC_008148  2417786  2418799  1014  ATP-NAD/AcoX kinase  YP_645146  decreased coverage  0.00235302  n/a    Rubrobacter xylanophilus DSM 9941  Bacteria 
 
 
-
 
Rxyl_2430  CDS  NC_008148  2446553  2446963  411  hypothetical protein  YP_645169  decreased coverage  0.00868022  n/a    Rubrobacter xylanophilus DSM 9941  Bacteria 
 
 
-
 
Rxyl_2584  CDS  NC_008148  2603340  2604221  882  binding-protein-dependent transport systems inner membrane component  YP_645313  decreased coverage  0.00518726  n/a    Rubrobacter xylanophilus DSM 9941  Bacteria 
 
 
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Rxyl_2585  CDS  NC_008148  2604225  2605496  1272  glycine betaine/L-proline transport ATP binding subunit  YP_645314  decreased coverage  0.000379474  n/a    Rubrobacter xylanophilus DSM 9941  Bacteria 
 
 
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Rxyl_2725  CDS  NC_008148  2739840  2740778  939  formate dehydrogenase beta subunit  YP_645452  decreased coverage  0.00195593  n/a    Rubrobacter xylanophilus DSM 9941  Bacteria 
 
 
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Rxyl_2851  CDS  NC_008148  2857144  2857956  813  hydroxypyruvate isomerase  YP_645575  decreased coverage  0.000102215  n/a    Rubrobacter xylanophilus DSM 9941  Bacteria 
 
 
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Rxyl_2885  CDS  NC_008148  2885714  2886736  1023  N-acetyl-gamma-glutamyl-phosphate reductase  YP_645608  decreased coverage  0.000192641  n/a    Rubrobacter xylanophilus DSM 9941  Bacteria 
 
 
-
 
Rxyl_2896  CDS  NC_008148  2897368  2899092  1725  2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase  YP_645619  decreased coverage  0.00112436  n/a    Rubrobacter xylanophilus DSM 9941  Bacteria 
 
 
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Rxyl_3028  CDS  NC_008148  3035094  3036782  1689  twin-arginine translocation pathway signal  YP_645750  decreased coverage  0.000374916  n/a    Rubrobacter xylanophilus DSM 9941  Bacteria 
 
 
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