101 decreased-coverage genes were found for selected organism/s



Page 1 of 2    << first  < prev  1  2    next >  last >>   


Locus tag

Gene type

Replicon accession

From

To

Strand

Gene Length

Product

Protein accession

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Organism name

Kingdom

Coverage Plot

PanDaTox homologs

Experimental validation
Mfla_0072  CDS  NC_007947  78463  78885  423  TraR/DksA family transcriptional regulator  YP_544184  decreased coverage  7.40961e-07  normal  Methylobacillus flagellatus KT  Bacteria 
 
 
-
 
Mfla_0170  CDS  NC_007947  183838  184539  702  TetR family transcriptional regulator  YP_544282  normal  decreased coverage  3.23068e-05  Methylobacillus flagellatus KT  Bacteria 
 
 
-
 
Mfla_0171  CDS  NC_007947  184557  185549  993  hypothetical protein  YP_544283  normal  decreased coverage  3.47581e-05  Methylobacillus flagellatus KT  Bacteria 
 
 
-
 
Mfla_0172  CDS  NC_007947  185681  186448  768  exodeoxyribonuclease III  YP_544284  normal  decreased coverage  2.98085e-05  Methylobacillus flagellatus KT  Bacteria 
 
 
-
 
Mfla_0173  CDS  NC_007947  186597  187172  576  nitroreductase  YP_544285  normal  decreased coverage  2.56246e-05  Methylobacillus flagellatus KT  Bacteria 
 
 
-
 
Mfla_0177  CDS  NC_007947  188837  190180  1344  deoxyguanosinetriphosphate triphosphohydrolase-like protein  YP_544289  normal  decreased coverage  4.29863e-05  Methylobacillus flagellatus KT  Bacteria 
 
 
-
 
Mfla_0178  CDS  NC_007947  190219  190533  315  hypothetical protein  YP_544290  normal  decreased coverage  3.06154e-05  Methylobacillus flagellatus KT  Bacteria 
 
 
-
 
Mfla_0179  CDS  NC_007947  190660  191349  690  aquaporin Z  YP_544291  normal  decreased coverage  3.41158e-05  Methylobacillus flagellatus KT  Bacteria 
 
 
-
 
Mfla_0180  CDS  NC_007947  191414  192124  711  hypothetical protein  YP_544292  normal  decreased coverage  3.89961e-05  Methylobacillus flagellatus KT  Bacteria 
 
 
-
 
Mfla_0181  CDS  NC_007947  192125  193396  1272  two component, sigma54 specific, Fis family transcriptional regulator  YP_544293  normal  decreased coverage  4.1492e-05  Methylobacillus flagellatus KT  Bacteria 
 
 
-
 
Mfla_0182  CDS  NC_007947  193393  195519  2127  multi-sensor signal transduction histidine kinase  YP_544294  normal  decreased coverage  5.83847e-05  Methylobacillus flagellatus KT  Bacteria 
 
 
-
 
Mfla_0183  CDS  NC_007947  195526  196065  540  putative proline rich signal peptide protein  YP_544295  normal  decreased coverage  3.32053e-05  Methylobacillus flagellatus KT  Bacteria 
 
 
-
 
Mfla_0312  CDS  NC_007947  307391  307627  237  50S ribosomal protein L28  YP_544424  decreased coverage  0.000118312  normal  0.224841  Methylobacillus flagellatus KT  Bacteria 
 
 
-
 
Mfla_0364  CDS  NC_007947  372551  374185  1635  chaperonin GroEL  YP_544476  unclonable  1.74436e-08  decreased coverage  0.00158274  Methylobacillus flagellatus KT  Bacteria 
 
 
-
 
Mfla_0432  CDS  NC_007947  440837  441550  714  two component transcriptional regulator  YP_544543  decreased coverage  3.22009e-06  normal  Methylobacillus flagellatus KT  Bacteria 
 
 
-
 
Mfla_0445  CDS  NC_007947  454926  455564  639  two component LuxR family transcriptional regulator  YP_544556  decreased coverage  1.43028e-08  normal  0.869605  Methylobacillus flagellatus KT  Bacteria 
 
 
-
 
Mfla_0446  CDS  NC_007947  455745  457433  1689  amino acid permease-associated region  YP_544557  decreased coverage  1.98962e-07  normal  0.478578  Methylobacillus flagellatus KT  Bacteria 
 
 
-
 
Mfla_0470  CDS  NC_007947  483126  483578  453  17 kDa surface antigen  YP_544581  decreased coverage  2.15158e-05  normal  0.945637  Methylobacillus flagellatus KT  Bacteria 
 
 
-
 
Mfla_0471  CDS  NC_007947  483590  484552  963  PfkB  YP_544582  decreased coverage  1.38593e-08  normal  Methylobacillus flagellatus KT  Bacteria 
 
 
-
 
Mfla_0497  CDS  NC_007947  514953  515675  723  peptidylprolyl isomerase  YP_544608  decreased coverage  5.10816e-07  normal  Methylobacillus flagellatus KT  Bacteria 
 
 
-
 
Mfla_0498  CDS  NC_007947  515672  516886  1215  ErfK/YbiS/YcfS/YnhG  YP_544609  decreased coverage  4.10538e-08  normal  Methylobacillus flagellatus KT  Bacteria 
 
 
-
 
Mfla_0518  CDS  NC_007947  540469  540885  417  GreA/GreB family elongation factor  YP_544629  decreased coverage  8.00329e-07  normal  Methylobacillus flagellatus KT  Bacteria 
 
 
-
 
Mfla_0519  CDS  NC_007947  541035  541742  708  putative integral membrane protein  YP_544630  decreased coverage  2.88688e-06  normal  Methylobacillus flagellatus KT  Bacteria 
 
 
-
 
Mfla_0575  CDS  NC_007947  598637  599392  756  hypothetical protein  YP_544686  decreased coverage  0.000185877  normal  0.010327  Methylobacillus flagellatus KT  Bacteria 
 
 
-
 
Mfla_0576  CDS  NC_007947  599463  601511  2049  putative site-specific recombinase, prophage insertion  YP_544687  decreased coverage  2.32694e-06  normal  0.0137689  Methylobacillus flagellatus KT  Bacteria 
 
 
-
 
Mfla_0577  CDS  NC_007947  601520  601888  369  putative monovalent cation/H+ antiporter subunit G  YP_544688  hitchhiker  0.0035249  decreased coverage  0.0097103  Methylobacillus flagellatus KT  Bacteria 
 
 
-
 
Mfla_0578  CDS  NC_007947  601885  602154  270  putative monovalent cation/H+ antiporter subunit F  YP_544689  hitchhiker  0.00573992  decreased coverage  0.00947424  Methylobacillus flagellatus KT  Bacteria 
 
 
-
 
Mfla_0579  CDS  NC_007947  602151  602642  492  cation antiporter  YP_544690  normal  0.0216682  decreased coverage  0.00989196  Methylobacillus flagellatus KT  Bacteria 
 
 
-
 
Mfla_0620  CDS  NC_007947  650434  651444  1011  thiosulphate-binding protein  YP_544731  decreased coverage  2.95034e-07  normal  Methylobacillus flagellatus KT  Bacteria 
 
 
-
 
Mfla_0621  CDS  NC_007947  651472  651672  201  hypothetical protein  YP_544732  decreased coverage  5.60407e-09  normal  Methylobacillus flagellatus KT  Bacteria 
 
 
-
 
Mfla_0622  CDS  NC_007947  651848  653383  1536  hypothetical protein  YP_544733  decreased coverage  2.19002e-07  normal  Methylobacillus flagellatus KT  Bacteria 
 
 
-
 
Mfla_0623  CDS  NC_007947  653671  654246  576  ATP:cob(I)alamin adenosyltransferase  YP_544734  decreased coverage  2.53905e-08  normal  Methylobacillus flagellatus KT  Bacteria 
 
 
-
 
Mfla_0627  CDS  NC_007947  656666  657325  660  OmpW  YP_544738  decreased coverage  3.5393e-09  normal  Methylobacillus flagellatus KT  Bacteria 
 
 
-
 
Mfla_0663  CDS  NC_007947  691189  692796  1608  phospholipase D/transphosphatidylase  YP_544774  decreased coverage  0.000324106  normal  Methylobacillus flagellatus KT  Bacteria 
 
 
-
 
Mfla_0702  CDS  NC_007947  731848  732705  858  sigma 32 (RpoH)  YP_544811  decreased coverage  1.79676e-08  normal  Methylobacillus flagellatus KT  Bacteria 
 
 
-
 
Mfla_0800  CDS  NC_007947  844430  845095  666  carbonic anhydrase  YP_544909  decreased coverage  1.81873e-05  normal  0.299491  Methylobacillus flagellatus KT  Bacteria 
 
 
-
 
Mfla_0840  CDS  NC_007947  883418  883639  222  Lip  YP_544949  decreased coverage  2.80312e-10  normal  0.942032  Methylobacillus flagellatus KT  Bacteria 
 
 
-
 
Mfla_0855  CDS  NC_007947  895612  897228  1617  L-aspartate oxidase  YP_544964  decreased coverage  2.53959e-05  normal  0.0344943  Methylobacillus flagellatus KT  Bacteria 
 
 
-
 
Mfla_0856  CDS  NC_007947  897423  898040  618  RNA polymerase sigma factor RpoE  YP_544965  decreased coverage  3.80767e-08  normal  0.0292756  Methylobacillus flagellatus KT  Bacteria 
 
 
-
 
Mfla_0884  CDS  NC_007947  923577  923984  408  hypothetical protein  YP_544993  normal  decreased coverage  0.0064704  Methylobacillus flagellatus KT  Bacteria 
 
 
-
 
Mfla_0927  CDS  NC_007947  974489  976198  1710  30S ribosomal protein S1  YP_545036  decreased coverage  3.0887e-07  normal  0.340595  Methylobacillus flagellatus KT  Bacteria 
 
 
-
 
Mfla_0963  CDS  NC_007947  1009226  1009387  162  tRNA/rRNA methyltransferase (SpoU)  YP_545072  decreased coverage  8.76713e-08  normal  Methylobacillus flagellatus KT  Bacteria 
 
 
-
 
Mfla_0984  CDS  NC_007947  1026450  1026671  222  Lip  YP_545093  decreased coverage  5.2987e-10  normal  0.528944  Methylobacillus flagellatus KT  Bacteria 
 
 
-
 
Mfla_1000  CDS  NC_007947  1040455  1041072  618  RNA polymerase sigma factor RpoE  YP_545109  decreased coverage  2.31343e-09  normal  0.0259336  Methylobacillus flagellatus KT  Bacteria 
 
 
-
 
Mfla_1071  CDS  NC_007947  1117521  1119230  1710  30S ribosomal protein S1  YP_545180  decreased coverage  3.19804e-06  normal  Methylobacillus flagellatus KT  Bacteria 
 
 
-
 
Mfla_1072  CDS  NC_007947  1119321  1120001  681  cytidylate kinase  YP_545181  decreased coverage  3.46962e-09  normal  Methylobacillus flagellatus KT  Bacteria 
 
 
-
 
Mfla_1132  CDS  NC_007947  1180268  1180834  567  hypothetical protein  YP_545241  decreased coverage  5.66375e-09  normal  0.27853  Methylobacillus flagellatus KT  Bacteria 
 
 
-
 
Mfla_1188  CDS  NC_007947  1236744  1236950  207  cold-shock DNA-binding protein family protein  YP_545297  decreased coverage  0.00084266  normal  Methylobacillus flagellatus KT  Bacteria 
 
 
-
 
Mfla_1284  CDS  NC_007947  1361990  1363903  1914  hypothetical protein  YP_545393  decreased coverage  1.17205e-06  decreased coverage  2.70892e-06  Methylobacillus flagellatus KT  Bacteria 
 
 
 
Mfla_1316  CDS  NC_007947  1395770  1396201  432  hypothetical protein  YP_545425  decreased coverage  0.00633996  normal  0.405619  Methylobacillus flagellatus KT  Bacteria 
 
 
-
 
Mfla_1317  CDS  NC_007947  1396320  1396817  498  hypothetical protein  YP_545426  decreased coverage  0.008617  normal  0.417753  Methylobacillus flagellatus KT  Bacteria 
 
 
-
 
Mfla_1318  CDS  NC_007947  1396840  1397790  951  hypothetical protein  YP_545427  decreased coverage  0.00989696  normal  0.434798  Methylobacillus flagellatus KT  Bacteria 
 
 
-
 
Mfla_1373  CDS  NC_007947  1469790  1471397  1608  putative beta (1-6) glucan synthase  YP_545482  decreased coverage  9.27844e-05  normal  Methylobacillus flagellatus KT  Bacteria 
 
 
-
 
Mfla_1374  CDS  NC_007947  1471641  1472165  525  hypothetical protein  YP_545483  decreased coverage  1.01555e-06  normal  Methylobacillus flagellatus KT  Bacteria 
 
 
-
 
Mfla_1481  CDS  NC_007947  1587583  1588335  753  hydroxyacylglutathione hydrolase  YP_545590  decreased coverage  0.00263805  normal  0.131466  Methylobacillus flagellatus KT  Bacteria 
 
 
-
 
Mfla_1482  CDS  NC_007947  1588450  1590006  1557  lytic transglycosylase, catalytic  YP_545591  decreased coverage  0.00124104  normal  0.157348  Methylobacillus flagellatus KT  Bacteria 
 
 
-
 
Mfla_1503  CDS  NC_007947  1608538  1609770  1233  3-oxoacyl-[acyl-carrier-protein] synthase II  YP_545612  decreased coverage  0.00474127  normal  Methylobacillus flagellatus KT  Bacteria 
 
 
-
 
Mfla_1529  CDS  NC_007947  1633609  1634484  876  elongation factor Ts  YP_545638  decreased coverage  4.39027e-05  normal  Methylobacillus flagellatus KT  Bacteria 
 
 
-
 
Mfla_1531  CDS  NC_007947  1635556  1636359  804  methionine aminopeptidase  YP_545640  decreased coverage  7.31877e-05  normal  Methylobacillus flagellatus KT  Bacteria 
 
 
-
 
Mfla_1557  CDS  NC_007947  1670533  1671351  819  binding-protein-dependent transport systems inner membrane component  YP_545666  decreased coverage  0.00127239  hitchhiker  0.00240392  Methylobacillus flagellatus KT  Bacteria 
 
 
-
 
Mfla_1644  CDS  NC_007947  1760452  1760934  483  TadE-like protein  YP_545753  decreased coverage  2.91587e-09  normal  0.422269  Methylobacillus flagellatus KT  Bacteria 
 
 
-
 
Mfla_1709  CDS  NC_007947  1829276  1830196  921  ornithine carbamoyltransferase  YP_545818  decreased coverage  0.00976675  hitchhiker  0.00312362  Methylobacillus flagellatus KT  Bacteria 
 
 
-
 
Mfla_1829  CDS  NC_007947  1969931  1970533  603  nitroreductase  YP_545937  decreased coverage  0.00202262  normal  Methylobacillus flagellatus KT  Bacteria 
 
 
-
 
Mfla_1995  CDS  NC_007947  2133187  2134707  1521  lactaldehyde dehydrogenase  YP_546103  decreased coverage  1.62834e-07  normal  Methylobacillus flagellatus KT  Bacteria 
 
 
-
 
Mfla_2003  CDS  NC_007947  2140680  2142587  1908  threonyl-tRNA synthetase  YP_546111  decreased coverage  0.00562927  normal  Methylobacillus flagellatus KT  Bacteria 
 
 
-
 
Mfla_2095  CDS  NC_007947  2243456  2244721  1266  LolC/E family lipoprotein releasing system, transmembrane protein  YP_546203  decreased coverage  0.00459774  normal  Methylobacillus flagellatus KT  Bacteria 
 
 
-
 
Mfla_2096  CDS  NC_007947  2244829  2245608  780  hypothetical protein  YP_546204  decreased coverage  0.0004226  normal  Methylobacillus flagellatus KT  Bacteria 
 
 
-
 
Mfla_2140  CDS  NC_007947  2287889  2288092  204  cold-shock DNA-binding protein family protein  YP_546248  decreased coverage  6.48799e-10  normal  Methylobacillus flagellatus KT  Bacteria 
 
 
-
 
Mfla_2205  CDS  NC_007947  2355973  2356347  375  DoxX  YP_546313  decreased coverage  9.90864e-06  normal  Methylobacillus flagellatus KT  Bacteria 
 
 
-
 
Mfla_2219  CDS  NC_007947  2369841  2370155  315  50S ribosomal protein L21P  YP_546327  decreased coverage  1.52954e-09  normal  Methylobacillus flagellatus KT  Bacteria 
 
 
-
 
Mfla_2220  CDS  NC_007947  2370349  2371317  969  trans-hexaprenyltranstransferase  YP_546328  decreased coverage  3.07661e-08  normal  Methylobacillus flagellatus KT  Bacteria 
 
 
-
 
Mfla_2226  CDS  NC_007947  2377527  2378135  609  dephospho-CoA kinase  YP_546334  decreased coverage  1.29832e-06  normal  0.59943  Methylobacillus flagellatus KT  Bacteria 
 
 
-
 
Mfla_2263  CDS  NC_007947  2415360  2416523  1164  cell division protein FtsZ  YP_546371  decreased coverage  0.00432482  hitchhiker  0.000536698  Methylobacillus flagellatus KT  Bacteria 
 
 
-
 
Mfla_2290  CDS  NC_007947  2443752  2445011  1260  transcription termination factor Rho  YP_546398  decreased coverage  7.67102e-07  normal  0.288713  Methylobacillus flagellatus KT  Bacteria 
 
 
-
 
Mfla_2291  CDS  NC_007947  2445138  2445380  243  50S ribosomal protein L31P  YP_546399  decreased coverage  1.43826e-07  normal  0.236339  Methylobacillus flagellatus KT  Bacteria 
 
 
-
 
Mfla_2314  CDS  NC_007947  2468602  2470479  1878  Pyrrolo-quinoline quinone  YP_546422  decreased coverage  1.00555e-06  unclonable  3.20672e-07  Methylobacillus flagellatus KT  Bacteria 
 
 
 
Mfla_2319  CDS  NC_007947  2476316  2477287  972  rhodanese-like protein  YP_546427  decreased coverage  1.29535e-08  hitchhiker  0.00245583  Methylobacillus flagellatus KT  Bacteria 
 
 
-
 
Mfla_2320  CDS  NC_007947  2477350  2477703  354  hypothetical protein  YP_546428  decreased coverage  4.76541e-10  hitchhiker  0.00196121  Methylobacillus flagellatus KT  Bacteria 
 
 
-
 
Mfla_2321  CDS  NC_007947  2477857  2478768  912  LysR family transcriptional regulator  YP_546429  decreased coverage  8.23941e-09  hitchhiker  0.00226942  Methylobacillus flagellatus KT  Bacteria 
 
 
-
 
Mfla_2322  CDS  NC_007947  2479188  2481122  1935  sigma 70 (RpoD)  YP_546430  decreased coverage  6.48058e-07  hitchhiker  0.00289182  Methylobacillus flagellatus KT  Bacteria 
 
 
-
 
Mfla_2337  CDS  NC_007947  2490943  2491767  825  tetratricopeptide region  YP_546445  decreased coverage  1.23403e-08  normal  0.0632651  Methylobacillus flagellatus KT  Bacteria 
 
 
-
 
Mfla_2338  CDS  NC_007947  2491771  2492313  543  OmpA/MotB  YP_546446  decreased coverage  2.945e-09  normal  0.0598095  Methylobacillus flagellatus KT  Bacteria 
 
 
-
 
Mfla_2339  CDS  NC_007947  2492453  2493700  1248  TolB-like protein  YP_546447  decreased coverage  4.1462e-08  normal  0.0677463  Methylobacillus flagellatus KT  Bacteria 
 
 
-
 
Mfla_2363  CDS  NC_007947  2515651  2516070  420  hypothetical protein  YP_546471  decreased coverage  1.00491e-08  normal  0.704799  Methylobacillus flagellatus KT  Bacteria 
 
 
-
 
Mfla_2384  CDS  NC_007947  2536371  2538155  1785  aspartyl-tRNA synthetase  YP_546490  decreased coverage  3.93733e-05  normal  Methylobacillus flagellatus KT  Bacteria 
 
 
-
 
Mfla_2423  CDS  NC_007947  2595309  2596334  1026  hypothetical protein  YP_546529  decreased coverage  0.00313024  normal  Methylobacillus flagellatus KT  Bacteria 
 
 
-
 
Mfla_2424  CDS  NC_007947  2596438  2596941  504  single-strand binding protein  YP_546530  decreased coverage  0.00208547  normal  Methylobacillus flagellatus KT  Bacteria 
 
 
-
 
Mfla_2430  CDS  NC_007947  2603769  2604173  405  DoxX  YP_546536  decreased coverage  0.00251481  normal  Methylobacillus flagellatus KT  Bacteria 
 
 
-
 
Mfla_2444  CDS  NC_007947  2622726  2623415  690  monofunctional biosynthetic peptidoglycan transglycosylase  YP_546550  decreased coverage  1.88115e-06  normal  0.588429  Methylobacillus flagellatus KT  Bacteria 
 
 
-
 
Mfla_2445  CDS  NC_007947  2623412  2624224  813  shikimate dehydrogenase  YP_546551  decreased coverage  3.08711e-06  normal  0.608428  Methylobacillus flagellatus KT  Bacteria 
 
 
-
 
Mfla_2446  CDS  NC_007947  2624233  2624748  516  rhodanese-like protein  YP_546552  decreased coverage  1.05937e-06  normal  0.573259  Methylobacillus flagellatus KT  Bacteria 
 
 
-
 
Mfla_2491  CDS  NC_007947  2668717  2669760  1044  rod shape-determining protein MreB  YP_546597  decreased coverage  0.00448666  normal  Methylobacillus flagellatus KT  Bacteria 
 
 
-
 
Mfla_2513  CDS  NC_007947  2693502  2693840  339  nitrogen regulatory protein P-II  YP_546619  decreased coverage  0.00284343  normal  Methylobacillus flagellatus KT  Bacteria 
 
 
-
 
Mfla_2667  CDS  NC_007947  2878214  2878690  477  LysM domain/BON superfamily protein  YP_546771  decreased coverage  1.46101e-06  normal  0.333538  Methylobacillus flagellatus KT  Bacteria 
 
 
-
 
Mfla_2668  CDS  NC_007947  2878710  2878946  237  hypothetical protein  YP_546772  decreased coverage  8.68697e-08  normal  0.680862  Methylobacillus flagellatus KT  Bacteria 
 
 
-
 
Mfla_2669  CDS  NC_007947  2879032  2879820  789  short-chain dehydrogenase/reductase SDR  YP_546773  decreased coverage  5.26189e-06  normal  0.715416  Methylobacillus flagellatus KT  Bacteria 
 
 
-
 
Mfla_2750  CDS  NC_007947  2960594  2961397  804  F0F1 ATP synthase subunit A  YP_546854  decreased coverage  1.90697e-05  normal  0.437749  Methylobacillus flagellatus KT  Bacteria 
 
 
-
 
Mfla_2751  CDS  NC_007947  2961407  2961793  387  ATP synthase protein I  YP_546855  decreased coverage  1.34012e-07  normal  0.604082  Methylobacillus flagellatus KT  Bacteria 
 
 
-
 
Mfla_R0014  tRNA  NC_007947  269738  269822  85  tRNA-Tyr    decreased coverage  1.94257e-10  hitchhiker  0.00490505  Methylobacillus flagellatus KT  Bacteria 
 
 
-
 
Mfla_R0039  tRNA  NC_007947  1662861  1662936  76  tRNA-Asn    decreased coverage  2.27587e-09  normal  0.0269838  Methylobacillus flagellatus KT  Bacteria 
 
 
-
 
Page 1 of 2    << first  < prev  1  2    next >  last >>