94 decreased-coverage genes were found for selected organism/s



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Locus tag

Gene type

Replicon accession

From

To

Strand

Gene Length

Product

Protein accession

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Organism name

Kingdom

Coverage Plot

PanDaTox homologs

Experimental validation
Mbur_0026  CDS  NC_007955  14204  14824  621  hypothetical protein  YP_564800  decreased coverage  1.32729e-07  n/a    Methanococcoides burtonii DSM 6242  Archaea 
 
 
-
 
Mbur_0027  CDS  NC_007955  14827  15354  528  cytidylate kinase  YP_564801  decreased coverage  3.01148e-09  n/a    Methanococcoides burtonii DSM 6242  Archaea 
 
 
-
 
Mbur_0183  CDS  NC_007955  164432  165568  1137  hypothetical protein  YP_564943  decreased coverage  1.04057e-05  n/a    Methanococcoides burtonii DSM 6242  Archaea 
 
 
-
 
Mbur_0196  CDS  NC_007955  178818  179609  792  proteasome subunit alpha  YP_564956  decreased coverage  6.16986e-12  n/a    Methanococcoides burtonii DSM 6242  Archaea 
 
 
-
 
Mbur_0197  CDS  NC_007955  179653  180345  693  putative RNA-associated protein  YP_564957  decreased coverage  2.36585e-11  n/a    Methanococcoides burtonii DSM 6242  Archaea 
 
 
-
 
Mbur_0218  CDS  NC_007955  197068  197913  846  hypothetical protein  YP_564978  decreased coverage  3.28858e-13  n/a    Methanococcoides burtonii DSM 6242  Archaea 
 
 
-
 
Mbur_0219  CDS  NC_007955  198129  198482  354  50S ribosomal protein L7Ae  YP_564979  decreased coverage  4.3194e-15  n/a    Methanococcoides burtonii DSM 6242  Archaea 
 
 
-
 
Mbur_0242    NC_007955  215139  216694  1556      decreased coverage  1.28134e-10  n/a    Methanococcoides burtonii DSM 6242  Archaea 
 
 
-
 
Mbur_0284  CDS  NC_007955  259946  261700  1755  formylmethanofuran dehydrogenase, subunit A  YP_565038  decreased coverage  0.00233084  n/a    Methanococcoides burtonii DSM 6242  Archaea 
 
 
-
 
Mbur_0332  CDS  NC_007955  312336  313487  1152  hypothetical protein  YP_565078  decreased coverage  4.74968e-12  n/a    Methanococcoides burtonii DSM 6242  Archaea 
 
 
-
 
Mbur_0374  CDS  NC_007955  354138  354770  633  proteasome endopeptidase complex  YP_565119  decreased coverage  2.69819e-09  n/a    Methanococcoides burtonii DSM 6242  Archaea 
 
 
-
 
Mbur_0375  CDS  NC_007955  354873  356783  1911  beta-lactamase-like protein  YP_565120  decreased coverage  3.59908e-05  n/a    Methanococcoides burtonii DSM 6242  Archaea 
 
 
-
 
Mbur_0379  CDS  NC_007955  358667  359659  993  aspartate semialdehyde dehydrogenase  YP_565124  decreased coverage  5.88949e-08  n/a    Methanococcoides burtonii DSM 6242  Archaea 
 
 
-
 
Mbur_0403  CDS  NC_007955  386243  387166  924  transposase, IS4  YP_565145  decreased coverage  0.00698757  n/a    Methanococcoides burtonii DSM 6242  Archaea 
 
 
-
 
Mbur_0489  CDS  NC_007955  483579  484505  927  ABC glycine betaine transporter, substrate-binding subunit  YP_565222  decreased coverage  2.00215e-08  n/a    Methanococcoides burtonii DSM 6242  Archaea 
 
 
-
 
Mbur_0533  CDS  NC_007955  535635  536195  561  hypothetical protein  YP_565261  decreased coverage  0.0011142  n/a    Methanococcoides burtonii DSM 6242  Archaea 
 
 
-
 
Mbur_0561  CDS  NC_007955  568206  569324  1119  hypothetical protein  YP_565286  decreased coverage  0.000173356  n/a    Methanococcoides burtonii DSM 6242  Archaea 
 
 
-
 
Mbur_0563  CDS  NC_007955  570187  570519  333  hypothetical protein  YP_565288  decreased coverage  5.23012e-05  n/a    Methanococcoides burtonii DSM 6242  Archaea 
 
 
-
 
Mbur_0576  CDS  NC_007955  585575  586864  1290  hypothetical protein  YP_565300  decreased coverage  0.000649164  n/a    Methanococcoides burtonii DSM 6242  Archaea 
 
 
-
 
Mbur_0595  CDS  NC_007955  606512  606943  432  hypothetical protein  YP_565316  decreased coverage  3.5066e-14  n/a    Methanococcoides burtonii DSM 6242  Archaea 
 
 
-
 
Mbur_0596  CDS  NC_007955  606965  608068  1104  CRISPR-associated Cse4 family protein  YP_565317  decreased coverage  8.66758e-12  n/a    Methanococcoides burtonii DSM 6242  Archaea 
 
 
-
 
Mbur_0597  CDS  NC_007955  608089  608823  735  CRISPR-associated Cas5e family protein  YP_565318  decreased coverage  3.45339e-13  n/a    Methanococcoides burtonii DSM 6242  Archaea 
 
 
-
 
Mbur_0598  CDS  NC_007955  608833  609507  675  CRISPR-associated Cse3 family protein  YP_565319  decreased coverage  1.63206e-13  n/a    Methanococcoides burtonii DSM 6242  Archaea 
 
 
-
 
Mbur_0606  CDS  NC_007955  621252  622313  1062  2-ketoisovalerate ferredoxin reductase  YP_565327  decreased coverage  2.86452e-09  n/a    Methanococcoides burtonii DSM 6242  Archaea 
 
 
-
 
Mbur_0618  CDS  NC_007955  634746  635981  1236  cation diffusion facilitator family transporter  YP_565339  decreased coverage  8.65863e-08  n/a    Methanococcoides burtonii DSM 6242  Archaea 
 
 
-
 
Mbur_0635  CDS  NC_007955  653094  654401  1308  ABC transporter, inner membrane subunit  YP_565356  decreased coverage  0.000706682  n/a    Methanococcoides burtonii DSM 6242  Archaea 
 
 
-
 
Mbur_0671  CDS  NC_007955  689571  690776  1206  hypothetical protein  YP_565390  decreased coverage  4.77795e-08  n/a    Methanococcoides burtonii DSM 6242  Archaea 
 
 
-
 
Mbur_0687  CDS  NC_007955  706869  707915  1047  succinylglutamate desuccinylase/aspartoacylase  YP_565403  decreased coverage  3.80153e-11  n/a    Methanococcoides burtonii DSM 6242  Archaea 
 
 
-
 
Mbur_0749  CDS  NC_007955  781738  782505  768  ABC phosphate transporter, ATPase subunit  YP_565460  decreased coverage  3.30265e-05  n/a    Methanococcoides burtonii DSM 6242  Archaea 
 
 
-
 
Mbur_0789  CDS  NC_007955  824588  825025  438  hypothetical protein  YP_565495  decreased coverage  8.86552e-05  n/a    Methanococcoides burtonii DSM 6242  Archaea 
 
 
-
 
Mbur_0835  CDS  NC_007955  880962  881507  546  neelarodoxin  YP_565539  decreased coverage  4.26651e-07  n/a    Methanococcoides burtonii DSM 6242  Archaea 
 
 
-
 
Mbur_0853  CDS  NC_007955  897344  898180  837  NAD(+) kinase  YP_565554  decreased coverage  4.99611e-13  n/a    Methanococcoides burtonii DSM 6242  Archaea 
 
 
-
 
Mbur_0896  CDS  NC_007955  962859  963548  690  ABC transporter, ATPase subunit  YP_565594  decreased coverage  0.00595939  n/a    Methanococcoides burtonii DSM 6242  Archaea 
 
 
-
 
Mbur_0962  CDS  NC_007955  1043553  1044170  618  lysine exporter protein LysE/YggA  YP_565653  decreased coverage  4.34422e-14  n/a    Methanococcoides burtonii DSM 6242  Archaea 
 
 
-
 
Mbur_1075  CDS  NC_007955  1153530  1154807  1278  pyruvate carboxyltransferase  YP_565755  decreased coverage  0.00051273  n/a    Methanococcoides burtonii DSM 6242  Archaea 
 
 
-
 
Mbur_1093  CDS  NC_007955  1172236  1173516  1281  Fe3+-hydroxamate binding protein  YP_565773  decreased coverage  6.29133e-09  n/a    Methanococcoides burtonii DSM 6242  Archaea 
 
 
-
 
Mbur_1102  CDS  NC_007955  1182074  1184356  2283  ski2-like helicase  YP_565780  decreased coverage  8.02157e-08  n/a    Methanococcoides burtonii DSM 6242  Archaea 
 
 
-
 
Mbur_1131  CDS  NC_007955  1215476  1216315  840  8-oxoguanine DNA glycosylase-like protein  YP_565806  decreased coverage  2.11663e-05  n/a    Methanococcoides burtonii DSM 6242  Archaea 
 
 
-
 
Mbur_1142  CDS  NC_007955  1227715  1230762  3048  FAD linked oxidase-like protein  YP_565817  decreased coverage  0.00601773  n/a    Methanococcoides burtonii DSM 6242  Archaea 
 
 
-
 
Mbur_1229  CDS  NC_007955  1319155  1320423  1269  glutamyl-tRNA reductase  YP_565901  decreased coverage  3.02896e-11  n/a    Methanococcoides burtonii DSM 6242  Archaea 
 
 
-
 
Mbur_1250  CDS  NC_007955  1340351  1341436  1086  MscS mechanosensitive ion channel  YP_565922  decreased coverage  4.14305e-12  n/a    Methanococcoides burtonii DSM 6242  Archaea 
 
 
-
 
Mbur_1334  CDS  NC_007955  1420057  1422159  2103  DNA mismatch repair protein MutS-like protein  YP_566002  decreased coverage  1.27118e-05  n/a    Methanococcoides burtonii DSM 6242  Archaea 
 
 
-
 
Mbur_1335  CDS  NC_007955  1422174  1423007  834  hypothetical protein  YP_566003  decreased coverage  4.7652e-09  n/a    Methanococcoides burtonii DSM 6242  Archaea 
 
 
-
 
Mbur_1362  CDS  NC_007955  1452046  1453326  1281  replication factor A  YP_566030  decreased coverage  9.81614e-08  n/a    Methanococcoides burtonii DSM 6242  Archaea 
 
 
-
 
Mbur_1363  CDS  NC_007955  1453437  1455269  1833  sodium/hydrogen exchanger  YP_566031  decreased coverage  0.00040523  n/a    Methanococcoides burtonii DSM 6242  Archaea 
 
 
-
 
Mbur_1382  CDS  NC_007955  1472118  1472690  573  electron transport complex, RnfABCDGE type, G subunit  YP_566047  decreased coverage  6.52446e-13  n/a    Methanococcoides burtonii DSM 6242  Archaea 
 
 
-
 
Mbur_1394  CDS  NC_007955  1484788  1485066  279  50S ribosomal protein L44e  YP_566059  decreased coverage  0.00510964  n/a    Methanococcoides burtonii DSM 6242  Archaea 
 
 
-
 
Mbur_1395  CDS  NC_007955  1485072  1485248  177  30S ribosomal protein S27e  YP_566060  decreased coverage  0.00331429  n/a    Methanococcoides burtonii DSM 6242  Archaea 
 
 
-
 
Mbur_1412  CDS  NC_007955  1497213  1498415  1203  metal-dependent phosphohydrolase  YP_566074  decreased coverage  3.93703e-07  n/a    Methanococcoides burtonii DSM 6242  Archaea 
 
 
-
 
Mbur_1475  CDS  NC_007955  1551347  1552507  1161  cytidyltransferase-related  YP_566132  decreased coverage  9.89061e-10  n/a    Methanococcoides burtonii DSM 6242  Archaea 
 
 
-
 
Mbur_1497  CDS  NC_007955  1573100  1574203  1104  condensin subunit ScpB  YP_566154  decreased coverage  4.76925e-05  n/a    Methanococcoides burtonii DSM 6242  Archaea 
 
 
-
 
Mbur_1508  CDS  NC_007955  1587797  1588192  396  hypothetical protein  YP_566165  decreased coverage  1.24446e-05  n/a    Methanococcoides burtonii DSM 6242  Archaea 
 
 
-
 
Mbur_1514  CDS  NC_007955  1592140  1592409  270  exodeoxyribonuclease VII small subunit  YP_566171  decreased coverage  2.8975e-09  n/a    Methanococcoides burtonii DSM 6242  Archaea 
 
 
-
 
Mbur_1515  CDS  NC_007955  1592416  1593639  1224  exodeoxyribonuclease VII large subunit  YP_566172  decreased coverage  3.25061e-10  n/a    Methanococcoides burtonii DSM 6242  Archaea 
 
 
-
 
Mbur_1525  CDS  NC_007955  1599860  1600765  906  tetrahydromethanopterin S-methyltransferase subunit E  YP_566182  decreased coverage  6.78047e-12  n/a    Methanococcoides burtonii DSM 6242  Archaea 
 
 
-
 
Mbur_1556  CDS  NC_007955  1635650  1636348  699  HAD family hydrolase  YP_566212  decreased coverage  3.53855e-11  n/a    Methanococcoides burtonii DSM 6242  Archaea 
 
 
-
 
Mbur_1566  CDS  NC_007955  1642563  1644743  2181  Rad3-related DNA helicases  YP_566221  decreased coverage  2.43015e-06  n/a    Methanococcoides burtonii DSM 6242  Archaea 
 
 
-
 
Mbur_1575  CDS  NC_007955  1651659  1653314  1656  flagellar assembly protein J  YP_566230  decreased coverage  0.00843715  n/a    Methanococcoides burtonii DSM 6242  Archaea 
 
 
-
 
Mbur_1579  CDS  NC_007955  1655813  1658287  2475  transmembrane oligosaccharyl transferase  YP_566233  decreased coverage  0.00308238  n/a    Methanococcoides burtonii DSM 6242  Archaea 
 
 
-
 
Mbur_1629    NC_007955  1707748  1709034  1287      decreased coverage  1.38051e-11  n/a    Methanococcoides burtonii DSM 6242  Archaea 
 
 
-
 
Mbur_1683  CDS  NC_007955  1762303  1763565  1263  hypothetical protein  YP_566327  decreased coverage  4.41582e-07  n/a    Methanococcoides burtonii DSM 6242  Archaea 
 
 
-
 
Mbur_1694  CDS  NC_007955  1777871  1779166  1296  PAS sensor protein  YP_566338  decreased coverage  9.2635e-09  n/a    Methanococcoides burtonii DSM 6242  Archaea 
 
 
-
 
Mbur_1697  CDS  NC_007955  1781035  1782357  1323  cobalt ABC transporter, ATPase subunit  YP_566341  decreased coverage  2.92327e-09  n/a    Methanococcoides burtonii DSM 6242  Archaea 
 
 
-
 
Mbur_1698  CDS  NC_007955  1782378  1783160  783  cobalt ABC transporter CbiQ, inner membrane subunit  YP_566342  decreased coverage  3.1286e-12  n/a    Methanococcoides burtonii DSM 6242  Archaea 
 
 
-
 
Mbur_1760  CDS  NC_007955  1851630  1852469  840  CBS domain-containing protein  YP_566400  decreased coverage  2.18135e-11  n/a    Methanococcoides burtonii DSM 6242  Archaea 
 
 
-
 
Mbur_1793  CDS  NC_007955  1892421  1893077  657  cobalt transport protein CbiM  YP_566431  decreased coverage  1.28429e-09  n/a    Methanococcoides burtonii DSM 6242  Archaea 
 
 
-
 
Mbur_1819  CDS  NC_007955  1917265  1918074  810  hypothetical protein  YP_566455  decreased coverage  0.00122772  n/a    Methanococcoides burtonii DSM 6242  Archaea 
 
 
-
 
Mbur_1833  CDS  NC_007955  1929057  1930643  1587  hypothetical protein  YP_566466  decreased coverage  4.63008e-10  n/a    Methanococcoides burtonii DSM 6242  Archaea 
 
 
-
 
Mbur_1838  CDS  NC_007955  1934721  1935806  1086  hypothetical protein  YP_566471  decreased coverage  2.86465e-05  n/a    Methanococcoides burtonii DSM 6242  Archaea 
 
 
-
 
Mbur_1933  CDS  NC_007955  2029279  2030451  1173  acetyl-CoA acetyltransferase  YP_566564  decreased coverage  0.00196536  n/a    Methanococcoides burtonii DSM 6242  Archaea 
 
 
-
 
Mbur_1986  CDS  NC_007955  2086990  2087892  903  preprotein translocase subunit SecF  YP_566615  decreased coverage  2.16285e-12  n/a    Methanococcoides burtonii DSM 6242  Archaea 
 
 
-
 
Mbur_2011  CDS  NC_007955  2115198  2117018  1821  hypothetical protein  YP_566639  decreased coverage  2.17201e-08  n/a    Methanococcoides burtonii DSM 6242  Archaea 
 
 
-
 
Mbur_2085  CDS  NC_007955  2188250  2189302  1053  biotin synthase  YP_566709  decreased coverage  0.000297943  n/a    Methanococcoides burtonii DSM 6242  Archaea 
 
 
-
 
Mbur_2086  CDS  NC_007955  2189313  2190563  1251  pyrolysyl-tRNA synthetase  YP_566710  decreased coverage  0.00625446  n/a    Methanococcoides burtonii DSM 6242  Archaea 
 
 
-
 
Mbur_2128  CDS  NC_007955  2231778  2232773  996  thiamine-monophosphate kinase  YP_566751  decreased coverage  2.22353e-11  n/a    Methanococcoides burtonii DSM 6242  Archaea 
 
 
-
 
Mbur_2129  CDS  NC_007955  2232800  2236714  3915  S-layer-like domain-containing protein  YP_566752  decreased coverage  0.00431402  n/a    Methanococcoides burtonii DSM 6242  Archaea 
 
 
-
 
Mbur_2153  CDS  NC_007955  2259144  2259659  516  hypothetical protein  YP_566773  decreased coverage  1.73574e-07  n/a    Methanococcoides burtonii DSM 6242  Archaea 
 
 
-
 
Mbur_2154  CDS  NC_007955  2259819  2260775  957  dihydrouridine synthase, DuS  YP_566774  decreased coverage  9.638e-06  n/a    Methanococcoides burtonii DSM 6242  Archaea 
 
 
-
 
Mbur_2197  CDS  NC_007955  2310145  2310771  627  phosphatidylserine decarboxylase  YP_566812  decreased coverage  6.71717e-09  n/a    Methanococcoides burtonii DSM 6242  Archaea 
 
 
-
 
Mbur_2209  CDS  NC_007955  2324173  2324781  609  CDP-alcohol phosphatidyltransferase  YP_566824  decreased coverage  7.79527e-10  n/a    Methanococcoides burtonii DSM 6242  Archaea 
 
 
-
 
Mbur_2258  CDS  NC_007955  2375304  2375927  624  MotA/TolQ/ExbB proton channel  YP_566869  decreased coverage  1.78215e-06  n/a    Methanococcoides burtonii DSM 6242  Archaea 
 
 
-
 
Mbur_2259  CDS  NC_007955  2375924  2376283  360  hypothetical protein  YP_566870  decreased coverage  1.18561e-07  n/a    Methanococcoides burtonii DSM 6242  Archaea 
 
 
-
 
Mbur_2277  CDS  NC_007955  2405010  2406122  1113  hypothetical protein  YP_566887  decreased coverage  3.96678e-09  n/a    Methanococcoides burtonii DSM 6242  Archaea 
 
 
-
 
Mbur_2306  CDS  NC_007955  2435002  2435433  432  MarR family transcriptional regulator  YP_566912  decreased coverage  1.37668e-14  n/a    Methanococcoides burtonii DSM 6242  Archaea 
 
 
-
 
Mbur_2334  CDS  NC_007955  2461856  2462155  300  hypothetical protein  YP_566938  decreased coverage  7.37032e-14  n/a    Methanococcoides burtonii DSM 6242  Archaea 
 
 
-
 
Mbur_2346  CDS  NC_007955  2475584  2476315  732  hypothetical protein  YP_566950  decreased coverage  0.000194273  n/a    Methanococcoides burtonii DSM 6242  Archaea 
 
 
-
 
Mbur_2352  CDS  NC_007955  2486717  2487397  681  5-amino-6-(5-phosphoribosylamino)uracil reductase  YP_566956  decreased coverage  2.92677e-12  n/a    Methanococcoides burtonii DSM 6242  Archaea 
 
 
-
 
Mbur_2377  CDS  NC_007955  2505841  2506470  630  NADPH-dependent FMN reductase  YP_566979  decreased coverage  8.48109e-06  n/a    Methanococcoides burtonii DSM 6242  Archaea 
 
 
-
 
Mbur_2378  CDS  NC_007955  2506471  2507169  699  oxidoreductase FAD/NAD(P)-binding  YP_566980  decreased coverage  9.75827e-07  n/a    Methanococcoides burtonii DSM 6242  Archaea 
 
 
-
 
Mbur_2390  CDS  NC_007955  2515651  2516055  405  30S ribosomal protein S9P  YP_566991  decreased coverage  1.1092e-13  n/a    Methanococcoides burtonii DSM 6242  Archaea 
 
 
-
 
Mbur_2391  CDS  NC_007955  2516070  2516258  189  DNA-directed RNA polymerase subunit N  YP_566992  decreased coverage  3.03526e-12  n/a    Methanococcoides burtonii DSM 6242  Archaea 
 
 
-
 
Mbur_2397  CDS  NC_007955  2520012  2521100  1089  isopentenyl pyrophosphate isomerase  YP_566998  decreased coverage  4.1762e-11  n/a    Methanococcoides burtonii DSM 6242  Archaea 
 
 
-
 
Mbur_2411  CDS  NC_007955  2536238  2537479  1242  small GTP-binding protein  YP_567012  decreased coverage  0.000356758  n/a    Methanococcoides burtonii DSM 6242  Archaea 
 
 
-
 
Mbur_2416  CDS  NC_007955  2542356  2543705  1350  gamma-glutamyl phosphate reductase  YP_567017  decreased coverage  0.00821851  n/a    Methanococcoides burtonii DSM 6242  Archaea 
 
 
-
 
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