105 decreased-coverage genes were found for selected organism/s



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Locus tag

Gene type

Replicon accession

From

To

Strand

Gene Length

Product

Protein accession

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Organism name

Kingdom

Coverage Plot

PanDaTox homologs

Experimental validation
Psyc_0069  CDS  NC_007204  77646  80372  2727  translation initiation factor IF-2  YP_263377  decreased coverage  0.00377162  normal  Psychrobacter arcticus 273-4  Bacteria 
 
 
-
 
Psyc_0114  CDS  NC_007204  135879  138116  2238  hypothetical protein  YP_263422  decreased coverage  0.00228861  normal  Psychrobacter arcticus 273-4  Bacteria 
 
 
-
 
Psyc_0149  CDS  NC_007204  178400  178735  336  hypothetical protein  YP_263457  decreased coverage  1.21716e-07  hitchhiker  2.66378e-05  Psychrobacter arcticus 273-4  Bacteria 
 
 
-
 
Psyc_0150  CDS  NC_007204  178866  179579  714  phosphoribosylaminoimidazole-succinocarboxamide synthase  YP_263458  decreased coverage  1.64845e-06  hitchhiker  3.04375e-05  Psychrobacter arcticus 273-4  Bacteria 
 
 
-
 
Psyc_0166  CDS  NC_007204  193038  193607  570  hypothetical protein  YP_263473  decreased coverage  1.07926e-05  hitchhiker  1.85577e-05  Psychrobacter arcticus 273-4  Bacteria 
 
 
-
 
Psyc_0204  CDS  NC_007204  244975  245355  381  SSU ribosomal protein S30P / sigma 54 modulation protein  YP_263511  decreased coverage  5.38725e-13  decreased coverage  1.27572e-05  Psychrobacter arcticus 273-4  Bacteria 
 
 
-
 
Psyc_0205  CDS  NC_007204  245787  245987  201  thiamine biosynthesis sulfur transfer protein  YP_263512  hitchhiker  2.22136e-07  decreased coverage  1.21699e-05  Psychrobacter arcticus 273-4  Bacteria 
 
 
-
 
Psyc_0253  CDS  NC_007204  303315  304661  1347  homoserine dehydrogenase  YP_263557  decreased coverage  3.22184e-11  normal  Psychrobacter arcticus 273-4  Bacteria 
 
 
-
 
Psyc_0293  CDS  NC_007204  358637  359938  1302  gamma-glutamyl phosphate reductase  YP_263597  decreased coverage  0.00187024  normal  Psychrobacter arcticus 273-4  Bacteria 
 
 
-
 
Psyc_0319  CDS  NC_007204  394653  395678  1026  cell division protein  YP_263622  decreased coverage  0.00406721  normal  Psychrobacter arcticus 273-4  Bacteria 
 
 
-
 
Psyc_0338  CDS  NC_007204  417594  418778  1185  outer membrane protein  YP_263641  decreased coverage  7.25554e-05  normal  Psychrobacter arcticus 273-4  Bacteria 
 
 
-
 
Psyc_0343  CDS  NC_007204  423686  426226  2541  putative RelA/SpoT family protein  YP_263646  decreased coverage  9.4604e-05  normal  Psychrobacter arcticus 273-4  Bacteria 
 
 
-
 
Psyc_0383  CDS  NC_007204  479294  480484  1191  elongation factor Tu  YP_263685  decreased coverage  0.00208538  normal  0.193247  Psychrobacter arcticus 273-4  Bacteria 
 
 
-
 
Psyc_0440  CDS  NC_007204  550716  551261  546  N-acetylmuramoyl-L-alanine amidase  YP_263737  decreased coverage  0.000507324  normal  Psychrobacter arcticus 273-4  Bacteria 
 
 
-
 
Psyc_0441  CDS  NC_007204  551327  551650  324  hypothetical protein  YP_263738  decreased coverage  0.000179787  normal  Psychrobacter arcticus 273-4  Bacteria 
 
 
-
 
Psyc_0479  CDS  NC_007204  584020  585093  1074  phage integrase  YP_263776  decreased coverage  0.00687154  normal  0.27879  Psychrobacter arcticus 273-4  Bacteria 
 
 
-
 
Psyc_0489  CDS  NC_007204  595972  596610  639  50S ribosomal protein L3  YP_263786  decreased coverage  1.09318e-13  normal  0.010086  Psychrobacter arcticus 273-4  Bacteria 
 
 
-
 
Psyc_0499  CDS  NC_007204  600841  601209  369  50S ribosomal protein L14  YP_263796  decreased coverage  1.01997e-08  decreased coverage  0.00104649  Psychrobacter arcticus 273-4  Bacteria 
 
 
-
 
Psyc_0500  CDS  NC_007204  601218  601535  318  50S ribosomal protein L24  YP_263797  hitchhiker  1.46538e-07  decreased coverage  0.00101346  Psychrobacter arcticus 273-4  Bacteria 
 
 
-
 
Psyc_0522  CDS  NC_007204  615347  615583  237  acyl carrier protein  YP_263819  decreased coverage  1.62549e-14  hitchhiker  0.00260243  Psychrobacter arcticus 273-4  Bacteria 
 
 
-
 
Psyc_0569  CDS  NC_007204  669690  670493  804  dienelactone hydrolase  YP_263864  decreased coverage  3.52652e-06  normal  Psychrobacter arcticus 273-4  Bacteria 
 
 
-
 
Psyc_0595  CDS  NC_007204  708587  710212  1626  NADH dehydrogenase subunit M  YP_263889  decreased coverage  0.000354161  normal  Psychrobacter arcticus 273-4  Bacteria 
 
 
-
 
Psyc_0682  CDS  NC_007204  810359  811474  1116  4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase  YP_263975  decreased coverage  9.53854e-11  normal  Psychrobacter arcticus 273-4  Bacteria 
 
 
-
 
Psyc_0691  CDS  NC_007204  821152  822456  1305  membrane-bound lytic murein transglycosylase  YP_263984  decreased coverage  5.67211e-07  normal  Psychrobacter arcticus 273-4  Bacteria 
 
 
-
 
Psyc_0695  CDS  NC_007204  826438  827184  747  hypothetical protein  YP_263988  decreased coverage  0.000617968  normal  Psychrobacter arcticus 273-4  Bacteria 
 
 
-
 
Psyc_0704  CDS  NC_007204  837666  838757  1092  murein-DD-endopeptidase  YP_263997  decreased coverage  1.86764e-08  normal  0.739418  Psychrobacter arcticus 273-4  Bacteria 
 
 
-
 
Psyc_0719  CDS  NC_007204  857655  860012  2358  Signal transduction histidine kinase sensor  YP_264012  decreased coverage  0.00268576  normal  Psychrobacter arcticus 273-4  Bacteria 
 
 
-
 
Psyc_0738  CDS  NC_007204  879961  880893  933  lysophospholipase  YP_264026  decreased coverage  2.17511e-05  normal  Psychrobacter arcticus 273-4  Bacteria 
 
 
-
 
Psyc_0751  CDS  NC_007204  897067  899670  2604  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase  YP_264039  decreased coverage  8.41014e-05  normal  0.171372  Psychrobacter arcticus 273-4  Bacteria 
 
 
-
 
Psyc_0761  CDS  NC_007204  910065  910673  609  tellurium resitance protein TerZ  YP_264048  decreased coverage  0.00228615  normal  0.0996912  Psychrobacter arcticus 273-4  Bacteria 
 
 
-
 
Psyc_0782  CDS  NC_007204  934537  935217  681  ABC lipoprotein exporter, ATPase subunit, LolD  YP_264069  decreased coverage  0.000690329  normal  Psychrobacter arcticus 273-4  Bacteria 
 
 
-
 
Psyc_0798  CDS  NC_007204  956080  956460  381  glycine cleavage system protein H  YP_264085  decreased coverage  0.00579569  normal  Psychrobacter arcticus 273-4  Bacteria 
 
 
-
 
Psyc_0813  CDS  NC_007204  975447  975923  477  transcription elongation factor GreA  YP_264100  decreased coverage  4.26484e-12  normal  0.0245884  Psychrobacter arcticus 273-4  Bacteria 
 
 
-
 
Psyc_0823  CDS  NC_007204  988604  991201  2598  putative chaperonin clpA/B  YP_264110  normal  decreased coverage  0.00549001  Psychrobacter arcticus 273-4  Bacteria 
 
 
-
 
Psyc_0824  CDS  NC_007204  991514  991642  129  hypothetical protein  YP_264111  normal  decreased coverage  0.00918152  Psychrobacter arcticus 273-4  Bacteria 
 
 
-
 
Psyc_0825  CDS  NC_007204  991614  991931  318  hypothetical protein  YP_264112  normal  decreased coverage  0.00952872  Psychrobacter arcticus 273-4  Bacteria 
 
 
-
 
Psyc_0827  CDS  NC_007204  993913  994269  357  hypothetical protein  YP_264114  normal  0.098665  decreased coverage  0.00931795  Psychrobacter arcticus 273-4  Bacteria 
 
 
-
 
Psyc_0870  CDS  NC_007204  1037208  1038503  1296  hypothetical protein  YP_264157  decreased coverage  1.49524e-09  normal  Psychrobacter arcticus 273-4  Bacteria 
 
 
-
 
Psyc_0934  CDS  NC_007204  1120374  1121810  1437  signal recognition particle-docking protein FtsY  YP_264221  decreased coverage  2.72201e-10  normal  Psychrobacter arcticus 273-4  Bacteria 
 
 
-
 
Psyc_0976  CDS  NC_007204  1171657  1172475  819  hypothetical protein  YP_264263  decreased coverage  0.00200448  hitchhiker  0.000161886  Psychrobacter arcticus 273-4  Bacteria 
 
 
-
 
Psyc_1056  CDS  NC_007204  1254867  1255766  900  LysR family transcriptional regulator  YP_264342  decreased coverage  3.24577e-07  normal  Psychrobacter arcticus 273-4  Bacteria 
 
 
-
 
Psyc_1075  CDS  NC_007204  1285357  1285680  324  ArsR family transcriptional regulator  YP_264361  decreased coverage  4.58748e-13  normal  Psychrobacter arcticus 273-4  Bacteria 
 
 
-
 
Psyc_1102  CDS  NC_007204  1313595  1314107  513  biotin carboxyl carrier protein  YP_264387  decreased coverage  0.000367173  normal  0.0759866  Psychrobacter arcticus 273-4  Bacteria 
 
 
-
 
Psyc_1126  CDS  NC_007204  1340502  1342706  2205  exonuclease V, alpha subunit  YP_264411  decreased coverage  0.00308131  normal  0.011484  Psychrobacter arcticus 273-4  Bacteria 
 
 
-
 
Psyc_1134  CDS  NC_007204  1356670  1357488  819  hypothetical protein  YP_264419  normal  0.82212  decreased coverage  0.00700066  Psychrobacter arcticus 273-4  Bacteria 
 
 
-
 
Psyc_1203  CDS  NC_007204  1444480  1446306  1827  aspartyl-tRNA synthetase  YP_264488  unclonable  1.20939e-10  decreased coverage  0.0042207  Psychrobacter arcticus 273-4  Bacteria 
 
 
-
 
Psyc_1204  CDS  NC_007204  1446374  1447351  978  lipid A biosynthesis acyltransferase  YP_264489  decreased coverage  0.00305247  hitchhiker  0.00931795  Psychrobacter arcticus 273-4  Bacteria 
 
 
-
 
Psyc_1212  CDS  NC_007204  1455014  1456096  1083  dTDP-glucose 4,6-dehydratase  YP_264496  normal  0.809645  decreased coverage  0.00336065  Psychrobacter arcticus 273-4  Bacteria 
 
 
-
 
Psyc_1213  CDS  NC_007204  1456132  1457037  906  putative dTDP-4-dehydrorhamnose reductase  YP_264497  normal  decreased coverage  0.00296174  Psychrobacter arcticus 273-4  Bacteria 
 
 
-
 
Psyc_1214  CDS  NC_007204  1457034  1457924  891  glucose-1-phosphate thymidylyltransferase  YP_264498  normal  0.942362  decreased coverage  0.00289209  Psychrobacter arcticus 273-4  Bacteria 
 
 
-
 
Psyc_1215  CDS  NC_007204  1457952  1458524  573  dTDP-4-dehydrorhamnose 3,5-epimerase  YP_264499  normal  decreased coverage  0.00252251  Psychrobacter arcticus 273-4  Bacteria 
 
 
-
 
Psyc_1216  CDS  NC_007204  1458754  1459683  930  branched-chain amino acid aminotransferase  YP_264500  normal  decreased coverage  0.00270183  Psychrobacter arcticus 273-4  Bacteria 
 
 
-
 
Psyc_1246  CDS  NC_007204  1495442  1495651  210  hypothetical protein  YP_264530  decreased coverage  6.10967e-10  normal  0.772542  Psychrobacter arcticus 273-4  Bacteria 
 
 
-
 
Psyc_1252  CDS  NC_007204  1503201  1504208  1008  hypothetical protein  YP_264536  decreased coverage  0.00388193  normal  Psychrobacter arcticus 273-4  Bacteria 
 
 
-
 
Psyc_1273  CDS  NC_007204  1532054  1535059  3006  membrane-bound lytic murein transglycosylase D precursor  YP_264557  decreased coverage  4.30428e-05  normal  Psychrobacter arcticus 273-4  Bacteria 
 
 
-
 
Psyc_1277  CDS  NC_007204  1538715  1540592  1878  preprotein translocase subunit SecD  YP_264561  decreased coverage  2.38254e-05  normal  Psychrobacter arcticus 273-4  Bacteria 
 
 
-
 
Psyc_1291  CDS  NC_007204  1554649  1556199  1551  exodeoxyribonuclease VII large subunit  YP_264575  decreased coverage  0.00804407  normal  Psychrobacter arcticus 273-4  Bacteria 
 
 
-
 
Psyc_1307  CDS  NC_007204  1575490  1576110  621  hypothetical protein  YP_264591  decreased coverage  1.28549e-12  normal  Psychrobacter arcticus 273-4  Bacteria 
 
 
-
 
Psyc_1335  CDS  NC_007204  1614150  1616534  2385  phosphoenolpyruvate synthase  YP_264619  decreased coverage  4.16419e-07  normal  Psychrobacter arcticus 273-4  Bacteria 
 
 
-
 
Psyc_1365  CDS  NC_007204  1644926  1646329  1404  Delta-9 acyl-phospholipid desaturase  YP_264647  decreased coverage  3.11769e-07  normal  Psychrobacter arcticus 273-4  Bacteria 
 
 
-
 
Psyc_1381  CDS  NC_007204  1666288  1667379  1092  transcription factor  YP_264663  decreased coverage  0.00306961  normal  Psychrobacter arcticus 273-4  Bacteria 
 
 
-
 
Psyc_1394  CDS  NC_007204  1686635  1687189  555  hypothetical protein  YP_264676  decreased coverage  0.00257534  normal  0.766681  Psychrobacter arcticus 273-4  Bacteria 
 
 
-
 
Psyc_1420  CDS  NC_007204  1720079  1720663  585  putative ubiquinol-cytochrome c reductase, iron-sulfur subunit  YP_264702  decreased coverage  2.80534e-08  normal  0.115712  Psychrobacter arcticus 273-4  Bacteria 
 
 
-
 
Psyc_1457  CDS  NC_007204  1768415  1769836  1422  ErfK/YbiS/YcfS/YnhG protein family protein  YP_264739  decreased coverage  5.0747e-11  normal  0.073975  Psychrobacter arcticus 273-4  Bacteria 
 
 
-
 
Psyc_1500  CDS  NC_007204  1821538  1822422  885  hypothetical protein  YP_264782  decreased coverage  9.98588e-05  normal  Psychrobacter arcticus 273-4  Bacteria 
 
 
-
 
Psyc_1525  CDS  NC_007204  1864709  1866061  1353  sodium-dependent transporter  YP_264807  decreased coverage  8.97057e-08  decreased coverage  0.00856693  Psychrobacter arcticus 273-4  Bacteria 
 
 
-
 
Psyc_1526  CDS  NC_007204  1866370  1867149  780  UDP-N-acetylglucosamine acyltransferase  YP_264808  hitchhiker  2.52979e-08  decreased coverage  0.00731319  Psychrobacter arcticus 273-4  Bacteria 
 
 
-
 
Psyc_1527  CDS  NC_007204  1867326  1867835  510  (3R)-hydroxymyristoyl-ACP dehydratase  YP_264809  hitchhiker  5.69467e-10  decreased coverage  0.0070986  Psychrobacter arcticus 273-4  Bacteria 
 
 
-
 
Psyc_1528  CDS  NC_007204  1867949  1868986  1038  UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase  YP_264810  hitchhiker  3.34554e-05  decreased coverage  0.00799179  Psychrobacter arcticus 273-4  Bacteria 
 
 
-
 
Psyc_1530  CDS  NC_007204  1871791  1873164  1374  peptidase RseP  YP_264812  normal  decreased coverage  0.00980857  Psychrobacter arcticus 273-4  Bacteria 
 
 
-
 
Psyc_1556  CDS  NC_007204  1906127  1906573  447  preprotein translocase subunit SecB  YP_264838  decreased coverage  1.44211e-12  normal  0.156074  Psychrobacter arcticus 273-4  Bacteria 
 
 
-
 
Psyc_1557  CDS  NC_007204  1906919  1907575  657  adenylate kinase  YP_264839  decreased coverage  6.21346e-12  normal  0.163414  Psychrobacter arcticus 273-4  Bacteria 
 
 
-
 
Psyc_1564  CDS  NC_007204  1916727  1917416  690  methyltransferase  YP_264846  decreased coverage  8.59592e-09  normal  0.334489  Psychrobacter arcticus 273-4  Bacteria 
 
 
-
 
Psyc_1565  CDS  NC_007204  1917628  1918056  429  50S ribosomal protein L13  YP_264847  decreased coverage  2.67326e-11  normal  0.325038  Psychrobacter arcticus 273-4  Bacteria 
 
 
-
 
Psyc_1566  CDS  NC_007204  1918067  1918453  387  30S ribosomal protein S9  YP_264848  decreased coverage  9.68491e-11  normal  0.322438  Psychrobacter arcticus 273-4  Bacteria 
 
 
-
 
Psyc_1576  CDS  NC_007204  1928426  1931653  3228  RND superfmily multidrug/dye/detergent efflux pump AcrB  YP_264858  decreased coverage  0.00327215  normal  Psychrobacter arcticus 273-4  Bacteria 
 
 
-
 
Psyc_1589  CDS  NC_007204  1945157  1945642  486  hypothetical protein  YP_264871  decreased coverage  7.59319e-07  normal  Psychrobacter arcticus 273-4  Bacteria 
 
 
-
 
Psyc_1600  CDS  NC_007204  1957402  1958946  1545  OMF family outer membrane efflux protein  YP_264882  decreased coverage  0.00101188  normal  Psychrobacter arcticus 273-4  Bacteria 
 
 
-
 
Psyc_1621  CDS  NC_007204  2003488  2004189  702  hypothetical protein  YP_264903  decreased coverage  2.48924e-05  normal  0.236713  Psychrobacter arcticus 273-4  Bacteria 
 
 
-
 
Psyc_1657  CDS  NC_007204  2050202  2051605  1404  fumarate hydratase  YP_264939  decreased coverage  0.000112707  normal  0.675256  Psychrobacter arcticus 273-4  Bacteria 
 
 
-
 
Psyc_1660  CDS  NC_007204  2055885  2058563  2679  DNA topoisomerase I  YP_264942  decreased coverage  0.000915276  normal  0.794129  Psychrobacter arcticus 273-4  Bacteria 
 
 
-
 
Psyc_1673  CDS  NC_007204  2070339  2070857  519  hypothetical protein  YP_264955  decreased coverage  0.00536019  normal  Psychrobacter arcticus 273-4  Bacteria 
 
 
-
 
Psyc_1772  CDS  NC_007204  2182115  2182372  258  hypothetical protein  YP_265054  decreased coverage  0.00391056  normal  Psychrobacter arcticus 273-4  Bacteria 
 
 
-
 
Psyc_1844  CDS  NC_007204  2269252  2270187  936  LysR family transcription regulator  YP_265126  decreased coverage  0.00735854  normal  0.299605  Psychrobacter arcticus 273-4  Bacteria 
 
 
-
 
Psyc_1879  CDS  NC_007204  2315518  2317788  2271  fimbrial assembly protein PilQ  YP_265161  decreased coverage  0.000275793  normal  Psychrobacter arcticus 273-4  Bacteria 
 
 
-
 
Psyc_1880  CDS  NC_007204  2317816  2318355  540  type IV pilus assembly  YP_265162  decreased coverage  0.000158762  normal  Psychrobacter arcticus 273-4  Bacteria 
 
 
-
 
Psyc_1888  CDS  NC_007204  2334121  2334492  372  50S ribosomal protein L7/L12  YP_265170  decreased coverage  0.000229099  normal  Psychrobacter arcticus 273-4  Bacteria 
 
 
-
 
Psyc_1903  CDS  NC_007204  2351587  2352282  696  ATP phosphoribosyltransferase catalytic subunit  YP_265185  decreased coverage  1.25958e-11  normal  0.0121061  Psychrobacter arcticus 273-4  Bacteria 
 
 
-
 
Psyc_1909  CDS  NC_007204  2357009  2357968  960  uroporphyrin-III C/tetrapyrrole methyltransferase  YP_265191  decreased coverage  8.48653e-09  hitchhiker  0.0046163  Psychrobacter arcticus 273-4  Bacteria 
 
 
-
 
Psyc_1913  CDS  NC_007204  2361125  2362192  1068  bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase  YP_265195  normal  0.680637  decreased coverage  3.16043e-05  Psychrobacter arcticus 273-4  Bacteria 
 
 
-
 
Psyc_1916  CDS  NC_007204  2364663  2364944  282  50S ribosomal protein L31 type B  YP_265198  decreased coverage  2.48892e-09  hitchhiker  0.00086053  Psychrobacter arcticus 273-4  Bacteria 
 
 
-
 
Psyc_1926  CDS  NC_007204  2374233  2375387  1155  ABC phosphate transporter, periplasmic solute binding subunit PstS  YP_265208  decreased coverage  0.0020181  hitchhiker  0.00465182  Psychrobacter arcticus 273-4  Bacteria 
 
 
-
 
Psyc_1930  CDS  NC_007204  2378645  2379376  732  phosphate uptake regulator, PhoU  YP_265212  decreased coverage  0.000762958  normal  0.0700968  Psychrobacter arcticus 273-4  Bacteria 
 
 
-
 
Psyc_1972  CDS  NC_007204  2432160  2433575  1416  3-oxoacyl-[acyl-carrier-protein] synthase II  YP_265253  decreased coverage  1.16517e-10  unclonable  1.39166e-06  Psychrobacter arcticus 273-4  Bacteria 
 
 
-
 
Psyc_1993  CDS  NC_007204  2459800  2460138  339  hypothetical protein  YP_265274  decreased coverage  1.86545e-05  normal  Psychrobacter arcticus 273-4  Bacteria 
 
 
-
 
Psyc_1997  CDS  NC_007204  2464845  2465201  357  50S ribosomal protein L20  YP_265278  decreased coverage  0.00229305  normal  Psychrobacter arcticus 273-4  Bacteria 
 
 
-
 
Psyc_2030  CDS  NC_007204  2498057  2498923  867  F0F1 ATP synthase subunit A  YP_265311  decreased coverage  1.75167e-08  normal  0.027211  Psychrobacter arcticus 273-4  Bacteria 
 
 
-
 
Psyc_2032  CDS  NC_007204  2500460  2501395  936  ABC zinc transporter, periplasmic solute binding protein ZnuA  YP_265313  normal  0.216012  decreased coverage  0.00438376  Psychrobacter arcticus 273-4  Bacteria 
 
 
-
 
Psyc_2075  CDS  NC_007204  2551648  2552256  609  putative nickel-dependent hydrogenase cytochrome b-type subunit  YP_265356  decreased coverage  2.288e-05  normal  0.934611  Psychrobacter arcticus 273-4  Bacteria 
 
 
-
 
Psyc_2082  CDS  NC_007204  2557555  2558256  702  hypothetical protein  YP_265363  decreased coverage  0.00637879  normal  Psychrobacter arcticus 273-4  Bacteria 
 
 
-
 
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