39 decreased-coverage genes were found for selected organism/s



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Locus tag

Gene type

Replicon accession

From

To

Strand

Gene Length

Product

Protein accession

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Organism name

Kingdom

Coverage Plot

PanDaTox homologs

Experimental validation
MCA0209  CDS  NC_002977  213268  213588  321  nifZ protein  YP_112745  decreased coverage  0.00067923  n/a    Methylococcus capsulatus str. Bath  Bacteria 
 
 
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MCA0210  CDS  NC_002977  213585  213854  270  nifZ protein, putative  YP_112746  decreased coverage  0.000650031  n/a    Methylococcus capsulatus str. Bath  Bacteria 
 
 
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MCA0235  CDS  NC_002977  234506  234931  426  nitrogenase molybdenum-iron protein NifX  YP_112770  decreased coverage  0.00441901  n/a    Methylococcus capsulatus str. Bath  Bacteria 
 
 
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MCA0299  CDS  NC_002977  293402  295261  1860  methanol dehydrogenase protein, large subunit, putative  YP_112833  decreased coverage  0.0065801  n/a    Methylococcus capsulatus str. Bath  Bacteria 
 
 
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MCA0532  CDS  NC_002977  548430  548702  273  DNA-binding protein HU-beta  YP_113051  decreased coverage  0.00043104  n/a    Methylococcus capsulatus str. Bath  Bacteria 
 
 
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MCA0580  CDS  NC_002977  609385  609819  435  hypothetical protein  YP_113097  decreased coverage  1.65262e-06  n/a    Methylococcus capsulatus str. Bath  Bacteria 
 
 
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MCA0605  CDS  NC_002977  639987  640307  321  putative lipoprotein  YP_113121  decreased coverage  7.61894e-07  n/a    Methylococcus capsulatus str. Bath  Bacteria 
 
 
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MCA0744  CDS  NC_002977  783272  783796  525  hypothetical protein  YP_113247  decreased coverage  0.00899887  n/a    Methylococcus capsulatus str. Bath  Bacteria 
 
 
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MCA0791  CDS  NC_002977  833983  835224  1242  transporter, putative  YP_113292  decreased coverage  9.00832e-05  n/a    Methylococcus capsulatus str. Bath  Bacteria 
 
 
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MCA0792  CDS  NC_002977  835417  835626  210  cold shock protein  YP_113293  decreased coverage  9.12185e-07  n/a    Methylococcus capsulatus str. Bath  Bacteria 
 
 
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MCA0842  CDS  NC_002977  887514  888689  1176  GGDEF domain-containing protein  YP_113338  decreased coverage  0.000293697  n/a    Methylococcus capsulatus str. Bath  Bacteria 
 
 
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MCA0851  CDS  NC_002977  896534  898447  1914  cell division protein FtsH  YP_113346  decreased coverage  0.00696414  n/a    Methylococcus capsulatus str. Bath  Bacteria 
 
 
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MCA1058  CDS  NC_002977  1108785  1109348  564  peptidyl-tRNA hydrolase  YP_113533  decreased coverage  0.0054523  n/a    Methylococcus capsulatus str. Bath  Bacteria 
 
 
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MCA1065  CDS  NC_002977  1114073  1114450  378  50S ribosomal protein L7/L12  YP_113540  decreased coverage  0.00323205  n/a    Methylococcus capsulatus str. Bath  Bacteria 
 
 
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MCA1171  CDS  NC_002977  1226496  1226954  459  hypothetical protein  YP_113637  decreased coverage  1.95908e-06  n/a    Methylococcus capsulatus str. Bath  Bacteria 
 
 
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MCA1216  CDS  NC_002977  1280734  1281258  525  hypothetical protein  YP_113680  decreased coverage  7.96661e-05  n/a    Methylococcus capsulatus str. Bath  Bacteria 
 
 
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MCA1218    NC_002977  1284084  1284308  225      decreased coverage  0.0042877  n/a    Methylococcus capsulatus str. Bath  Bacteria 
 
 
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MCA1264  CDS  NC_002977  1346677  1348842  2166  peptide ABC transporter, periplasmic peptide-binding protein, putative  YP_113727  decreased coverage  0.00386395  n/a    Methylococcus capsulatus str. Bath  Bacteria 
 
 
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MCA1411  CDS  NC_002977  1498297  1498584  288  integration host factor, beta subunit  YP_113869  decreased coverage  0.00234399  n/a    Methylococcus capsulatus str. Bath  Bacteria 
 
 
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MCA1441  CDS  NC_002977  1533987  1534613  627  UbiE/COQ5 family methlytransferase  YP_113898  decreased coverage  0.000764793  n/a    Methylococcus capsulatus str. Bath  Bacteria 
 
 
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MCA1444  CDS  NC_002977  1537097  1537540  444  hypothetical protein  YP_113901  decreased coverage  1.70053e-06  n/a    Methylococcus capsulatus str. Bath  Bacteria 
 
 
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MCA1455  CDS  NC_002977  1546705  1548219  1515  apolipoprotein N-acyltransferase  YP_113912  decreased coverage  0.0063424  n/a    Methylococcus capsulatus str. Bath  Bacteria 
 
 
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MCA1481  CDS  NC_002977  1573769  1576426  2658  ribonuclease E  YP_113938  decreased coverage  0.00665357  n/a    Methylococcus capsulatus str. Bath  Bacteria 
 
 
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MCA1495  CDS  NC_002977  1593489  1594496  1008  hypothetical protein  YP_113952  decreased coverage  0.00771781  n/a    Methylococcus capsulatus str. Bath  Bacteria 
 
 
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MCA1524  CDS  NC_002977  1626150  1626599  450  hypothetical protein  YP_113980  decreased coverage  0.00128294  n/a    Methylococcus capsulatus str. Bath  Bacteria 
 
 
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MCA1559  CDS  NC_002977  1659314  1659940  627  hypothetical protein  YP_114013  decreased coverage  0.00538046  n/a    Methylococcus capsulatus str. Bath  Bacteria 
 
 
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MCA1650  CDS  NC_002977  1753427  1755886  2460  sensory box protein  YP_114093  decreased coverage  0.00487383  n/a    Methylococcus capsulatus str. Bath  Bacteria 
 
 
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MCA1654  CDS  NC_002977  1757827  1758423  597  N utilization substance protein B  YP_114097  decreased coverage  0.00612472  n/a    Methylococcus capsulatus str. Bath  Bacteria 
 
 
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MCA1655  CDS  NC_002977  1758420  1758899  480  6,7-dimethyl-8-ribityllumazine synthase  YP_114098  decreased coverage  0.00355092  n/a    Methylococcus capsulatus str. Bath  Bacteria 
 
 
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MCA1804  CDS  NC_002977  1933779  1934744  966  acetyl-CoA carboxylase, carboxyl transferase, alpha subunit  YP_114242  decreased coverage  0.0029893  n/a    Methylococcus capsulatus str. Bath  Bacteria 
 
 
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MCA2086  CDS  NC_002977  2245711  2246286  576  dinucleoside polyphosphate hydrolase  YP_114516  decreased coverage  2.23693e-05  n/a    Methylococcus capsulatus str. Bath  Bacteria 
 
 
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MCA2376  CDS  NC_002977  2556889  2557359  471  30S ribosomal protein S7  YP_114792  decreased coverage  0.000622465  n/a    Methylococcus capsulatus str. Bath  Bacteria 
 
 
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MCA2377  CDS  NC_002977  2557378  2557752  375  30S ribosomal protein S12  YP_114793  decreased coverage  0.00376879  n/a    Methylococcus capsulatus str. Bath  Bacteria 
 
 
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MCA2442  CDS  NC_002977  2623708  2624343  636  MOSC domain-containing protein  YP_114856  decreased coverage  0.000472936  n/a    Methylococcus capsulatus str. Bath  Bacteria 
 
 
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MCA2853  CDS  NC_002977  3046666  3047910  1245  methane monooxygenase, B subunit  YP_115247  decreased coverage  5.02412e-05  n/a    Methylococcus capsulatus str. Bath  Bacteria 
 
 
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MCA2934  CDS  NC_002977  3122655  3123218  564  hypothetical protein  YP_115326  decreased coverage  0.00447854  n/a    Methylococcus capsulatus str. Bath  Bacteria 
 
 
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MCA3091  CDS  NC_002977  3276960  3278324  1365  decarboxylase family protein  YP_115478  decreased coverage  0.00268916  n/a    Methylococcus capsulatus str. Bath  Bacteria 
 
 
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MCA_tRNA-Gly-1  tRNA  NC_002977  1109530  1109603  74  tRNA-Gly    decreased coverage  0.00109047  n/a    Methylococcus capsulatus str. Bath  Bacteria 
 
 
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MCA_tRNA-Tyr-1  tRNA  NC_002977  1109428  1109512  85  tRNA-Tyr    decreased coverage  0.00106012  n/a    Methylococcus capsulatus str. Bath  Bacteria 
 
 
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