56 decreased-coverage genes were found for selected organism/s



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Locus tag

Gene type

Replicon accession

From

To

Strand

Gene Length

Product

Protein accession

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Organism name

Kingdom

Coverage Plot

PanDaTox homologs

Experimental validation
GSU0333  CDS  NC_002939  364544  364819  276  ATP synthase F0, C subunit  NP_951393  decreased coverage  0.000631431  n/a    Geobacter sulfurreducens PCA  Bacteria 
 
 
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GSU0517  CDS  NC_002939  550546  551760  1215  hypothetical protein  NP_951575  decreased coverage  0.00645936  n/a    Geobacter sulfurreducens PCA  Bacteria 
 
 
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GSU0522  CDS  NC_002939  555700  557031  1332  ATP-dependent RNA helicase RhlB  NP_951580  decreased coverage  0.00923533  n/a    Geobacter sulfurreducens PCA  Bacteria 
 
 
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GSU0593  CDS  NC_002939  625543  626199  657  hypothetical protein  NP_951651  decreased coverage  0.000727349  n/a    Geobacter sulfurreducens PCA  Bacteria 
 
 
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GSU0611  CDS  NC_002939  647453  647962  510  phosphoribosylaminoimidazole carboxylase, catalytic subunit  NP_951669  decreased coverage  0.000304451  n/a    Geobacter sulfurreducens PCA  Bacteria 
 
 
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GSU0620  CDS  NC_002939  656865  657215  351  hypothetical protein  NP_951678  decreased coverage  0.000129078  n/a    Geobacter sulfurreducens PCA  Bacteria 
 
 
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GSU0655  CDS  NC_002939  690757  691611  855  RNA polymerase sigma-32 factor  NP_951712  decreased coverage  0.00800994  n/a    Geobacter sulfurreducens PCA  Bacteria 
 
 
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GSU0731  CDS  NC_002939  777950  778777  828  UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase  NP_951788  decreased coverage  0.00540516  n/a    Geobacter sulfurreducens PCA  Bacteria 
 
 
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GSU0859  CDS  NC_002939  918502  919371  870  UTP-glucose-1-phosphate uridylyltransferase  NP_951916  decreased coverage  0.00129209  n/a    Geobacter sulfurreducens PCA  Bacteria 
 
 
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GSU0916  CDS  NC_002939  982110  983294  1185  methyl-accepting chemotaxis protein  NP_951970  decreased coverage  0.00484593  n/a    Geobacter sulfurreducens PCA  Bacteria 
 
 
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GSU0919  CDS  NC_002939  985247  985468  222  hypothetical protein  NP_951973  decreased coverage  0.00217727  n/a    Geobacter sulfurreducens PCA  Bacteria 
 
 
-
 
GSU1018  CDS  NC_002939  1099430  1099981  552  hypothetical protein  NP_952072  decreased coverage  0.00184623  n/a    Geobacter sulfurreducens PCA  Bacteria 
 
 
-
 
GSU1071  CDS  NC_002939  1160799  1161107  309  hypothetical protein  NP_952124  decreased coverage  0.000981467  n/a    Geobacter sulfurreducens PCA  Bacteria 
 
 
-
 
GSU1089  CDS  NC_002939  1174351  1175457  1107  iron-sulfur cluster-binding protein  NP_952142  decreased coverage  0.0040129  n/a    Geobacter sulfurreducens PCA  Bacteria 
 
 
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GSU1144  CDS  NC_002939  1235202  1235597  396  chemotaxis protein CheD, putative  NP_952197  decreased coverage  0.000787559  n/a    Geobacter sulfurreducens PCA  Bacteria 
 
 
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GSU1145  CDS  NC_002939  1235626  1236690  1065  protein-glutamate methylesterase  NP_952198  decreased coverage  0.00201495  n/a    Geobacter sulfurreducens PCA  Bacteria 
 
 
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GSU1176  CDS  NC_002939  1281852  1282514  663  fumarate reductase, cytochrome b subunit, putative  NP_952229  decreased coverage  0.000804206  n/a    Geobacter sulfurreducens PCA  Bacteria 
 
 
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GSU1194  CDS  NC_002939  1298743  1299363  621  amino acid transporter LysE  NP_952247  decreased coverage  0.00235397  n/a    Geobacter sulfurreducens PCA  Bacteria 
 
 
-
 
GSU1214  CDS  NC_002939  1317073  1318074  1002  tetracenomycin polyketide synthesis 8-o-methyltransferase, putative  NP_952267  decreased coverage  0.00996217  n/a    Geobacter sulfurreducens PCA  Bacteria 
 
 
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GSU1277  CDS  NC_002939  1393780  1394256  477  transcription elongation factor GreA  NP_952330  decreased coverage  0.000293441  n/a    Geobacter sulfurreducens PCA  Bacteria 
 
 
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GSU1523  CDS  NC_002939  1669765  1670553  789  stationary phase survival protein SurE  NP_952574  decreased coverage  0.00581861  n/a    Geobacter sulfurreducens PCA  Bacteria 
 
 
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GSU1525  CDS  NC_002939  1671264  1672250  987  sigma-70 family RNA polymerase sigma factor  NP_952576  decreased coverage  0.00220664  n/a    Geobacter sulfurreducens PCA  Bacteria 
 
 
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GSU1575  CDS  NC_002939  1726864  1727592  729  hypothetical protein  NP_952626  decreased coverage  0.00527276  n/a    Geobacter sulfurreducens PCA  Bacteria 
 
 
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GSU1586  CDS  NC_002939  1738694  1739851  1158  transcription elongation factor NusA  NP_952637  decreased coverage  0.00876176  n/a    Geobacter sulfurreducens PCA  Bacteria 
 
 
-
 
GSU1591  CDS  NC_002939  1744474  1745388  915  tRNA pseudouridine synthase B  NP_952642  decreased coverage  0.00165016  n/a    Geobacter sulfurreducens PCA  Bacteria 
 
 
-
 
GSU1604  CDS  NC_002939  1755718  1755951  234  acyl carrier protein  NP_952655  decreased coverage  9.08014e-05  n/a    Geobacter sulfurreducens PCA  Bacteria 
 
 
-
 
GSU1661  CDS  NC_002939  1825323  1825952  630  hypothetical protein  NP_952712  decreased coverage  0.00522881  n/a    Geobacter sulfurreducens PCA  Bacteria 
 
 
-
 
GSU1662  CDS  NC_002939  1826052  1826969  918  hypothetical protein  NP_952713  decreased coverage  0.00259728  n/a    Geobacter sulfurreducens PCA  Bacteria 
 
 
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GSU1664  CDS  NC_002939  1828327  1828740  414  hypothetical protein  NP_952715  decreased coverage  0.00161452  n/a    Geobacter sulfurreducens PCA  Bacteria 
 
 
-
 
GSU1705  CDS  NC_002939  1868888  1869691  804  3-methyl-2-oxobutanoate hydroxymethyltransferase  NP_952756  decreased coverage  0.00501586  n/a    Geobacter sulfurreducens PCA  Bacteria 
 
 
-
 
GSU1749  CDS  NC_002939  1914239  1914751  513  hypothetical protein  NP_952799  decreased coverage  0.000415996  n/a    Geobacter sulfurreducens PCA  Bacteria 
 
 
-
 
GSU1750  CDS  NC_002939  1914919  1915137  219  translation initiation factor IF-1  NP_952800  decreased coverage  0.000829048  n/a    Geobacter sulfurreducens PCA  Bacteria 
 
 
-
 
GSU1751  CDS  NC_002939  1915160  1915306  147  hypothetical protein  NP_952801  decreased coverage  0.000636971  n/a    Geobacter sulfurreducens PCA  Bacteria 
 
 
-
 
GSU1777  CDS  NC_002939  1940273  1940806  534  hypothetical protein  NP_952827  decreased coverage  0.00171207  n/a    Geobacter sulfurreducens PCA  Bacteria 
 
 
-
 
GSU1796  CDS  NC_002939  1961541  1962641  1101  DHH family protein  NP_952846  decreased coverage  0.00640097  n/a    Geobacter sulfurreducens PCA  Bacteria 
 
 
-
 
GSU1821  CDS  NC_002939  1988544  1989803  1260  N-acetylmuramoyl-L-alanine amidase  NP_952871  decreased coverage  0.00645936  n/a    Geobacter sulfurreducens PCA  Bacteria 
 
 
-
 
GSU1856  misc_feature  NC_002939  2028734  2029639  906  transposase, IS4 family, authentic point mutation    decreased coverage  0.00720712  n/a    Geobacter sulfurreducens PCA  Bacteria 
 
 
-
 
GSU1859  CDS  NC_002939  2037157  2037696  540  keto/oxoacid ferredoxin oxidoreductase, gamma subunit  NP_952908  decreased coverage  0.00305059  n/a    Geobacter sulfurreducens PCA  Bacteria 
 
 
-
 
GSU1862  CDS  NC_002939  2039558  2039761  204  keto/oxoacid ferredoxin oxidoreductase subunit  NP_952911  decreased coverage  0.00222971  n/a    Geobacter sulfurreducens PCA  Bacteria 
 
 
-
 
GSU1879  CDS  NC_002939  2057966  2058682  717  DNA-binding response regulator  NP_952928  decreased coverage  0.000557668  n/a    Geobacter sulfurreducens PCA  Bacteria 
 
 
-
 
GSU1908  CDS  NC_002939  2086636  2087292  657  phosphatidylserine decarboxylase  NP_952957  decreased coverage  0.0031301  n/a    Geobacter sulfurreducens PCA  Bacteria 
 
 
-
 
GSU2168  CDS  NC_002939  2382140  2382631  492  DNA repair protein RadC  NP_953217  decreased coverage  0.00702134  n/a    Geobacter sulfurreducens PCA  Bacteria 
 
 
-
 
GSU2234  CDS  NC_002939  2449922  2450113  192  50S ribosomal protein L28  NP_953283  decreased coverage  0.000532075  n/a    Geobacter sulfurreducens PCA  Bacteria 
 
 
-
 
GSU2235  CDS  NC_002939  2450222  2450602  381  endoribonuclease L-PSP, putative  NP_953284  decreased coverage  0.00087243  n/a    Geobacter sulfurreducens PCA  Bacteria 
 
 
-
 
GSU2370  CDS  NC_002939  2597156  2597998  843  acetyl-CoA carboxylase, carboxyl transferase, beta subunit  NP_953417  decreased coverage  0.00172685  n/a    Geobacter sulfurreducens PCA  Bacteria 
 
 
-
 
GSU2429  CDS  NC_002939  2663855  2664910  1056  peptidyl-prolyl cis-trans isomerase domain-containing protein  NP_953475  decreased coverage  0.00328792  n/a    Geobacter sulfurreducens PCA  Bacteria 
 
 
-
 
GSU2472  CDS  NC_002939  2710996  2711397  402  virulence associated protein C  NP_953518  decreased coverage  0.00148493  n/a    Geobacter sulfurreducens PCA  Bacteria 
 
 
-
 
GSU2797  CDS  NC_002939  3076562  3077380  819  electron transfer flavoprotein, beta subunit  NP_953841  decreased coverage  0.000537457  n/a    Geobacter sulfurreducens PCA  Bacteria 
 
 
-
 
GSU2808  CDS  NC_002939  3088058  3088627  570  cytochrome c family protein  NP_953852  decreased coverage  0.000226609  n/a    Geobacter sulfurreducens PCA  Bacteria 
 
 
-
 
GSU2842  CDS  NC_002939  3122077  3122616  540  50S ribosomal protein L6  NP_953885  decreased coverage  0.00681087  n/a    Geobacter sulfurreducens PCA  Bacteria 
 
 
-
 
GSU3206  CDS  NC_002939  3512703  3513122  420  dnaK suppressor protein, putative  NP_954247  decreased coverage  0.000255465  n/a    Geobacter sulfurreducens PCA  Bacteria 
 
 
-
 
GSU3210  CDS  NC_002939  3515660  3516310  651  nicotinate (nicotinamide) nucleotide adenylyltransferase  NP_954251  decreased coverage  0.000455912  n/a    Geobacter sulfurreducens PCA  Bacteria 
 
 
-
 
GSU3234  CDS  NC_002939  3550468  3550614  147  hypothetical protein  NP_954275  decreased coverage  0.000111339  n/a    Geobacter sulfurreducens PCA  Bacteria 
 
 
-
 
GSU3235  CDS  NC_002939  3550599  3550856  258  50S ribosomal protein L27  NP_954276  decreased coverage  0.000158281  n/a    Geobacter sulfurreducens PCA  Bacteria 
 
 
-
 
GSU3273  CDS  NC_002939  3589678  3590727  1050  hypothetical protein  NP_954313  decreased coverage  0.0026213  n/a    Geobacter sulfurreducens PCA  Bacteria 
 
 
-
 
tRNA-Cys-1  tRNA  NC_002939  1992689  1992763  75  tRNA-Cys    decreased coverage  0.000388055  n/a    Geobacter sulfurreducens PCA  Bacteria 
 
 
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