62 decreased-coverage genes were found for selected organism/s



Page 1 of 1    << first  < prev  1  next >  last >>   


Locus tag

Gene type

Replicon accession

From

To

Strand

Gene Length

Product

Protein accession

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Organism name

Kingdom

Coverage Plot

PanDaTox homologs

Experimental validation
DET0056  CDS  NC_002936  50873  51034  162  hypothetical protein  YP_180809  decreased coverage  0.00237011  n/a    Dehalococcoides ethenogenes 195  Bacteria 
 
 
-
 
DET0079  CDS  NC_002936  77229  78893  1665  trichloroethene reductive dehalogenase  YP_180831  decreased coverage  0.00164109  n/a    Dehalococcoides ethenogenes 195  Bacteria 
 
 
-
 
DET0080  CDS  NC_002936  79177  79710  534  hypothetical protein  YP_180832  decreased coverage  1.24553e-05  n/a    Dehalococcoides ethenogenes 195  Bacteria 
 
 
-
 
DET0097  CDS  NC_002936  92373  93089  717  iron dependent repressor, putative  YP_180848  decreased coverage  0.0071213  n/a    Dehalococcoides ethenogenes 195  Bacteria 
 
 
-
 
DET0104  CDS  NC_002936  101430  102416  987  hypothetical protein  YP_180855  decreased coverage  6.77137e-05  n/a    Dehalococcoides ethenogenes 195  Bacteria 
 
 
-
 
DET0105  CDS  NC_002936  103037  103876  840  degV family protein  YP_180856  decreased coverage  4.65331e-05  n/a    Dehalococcoides ethenogenes 195  Bacteria 
 
 
-
 
DET0125  CDS  NC_002936  122839  123864  1026  alcohol dehydrogenase, zinc-containing  YP_180875  decreased coverage  0.000121162  n/a    Dehalococcoides ethenogenes 195  Bacteria 
 
 
-
 
DET0199  CDS  NC_002936  191777  192283  507  ferredoxin-thioredoxin reductase, catalytic subunit, putative/rubredoxin  YP_180947  decreased coverage  0.000596117  n/a    Dehalococcoides ethenogenes 195  Bacteria 
 
 
-
 
DET0200  CDS  NC_002936  192371  193282  912  hypothetical protein  YP_180948  decreased coverage  7.45264e-05  n/a    Dehalococcoides ethenogenes 195  Bacteria 
 
 
-
 
DET0251  CDS  NC_002936  240825  241478  654  transcriptional repressor LexA, putative  YP_180999  decreased coverage  0.00843575  n/a    Dehalococcoides ethenogenes 195  Bacteria 
 
 
-
 
DET0252  CDS  NC_002936  241589  241819  231  hypothetical protein  YP_181000  decreased coverage  0.00198773  n/a    Dehalococcoides ethenogenes 195  Bacteria 
 
 
-
 
DET0306  CDS  NC_002936  294215  295732  1518  reductive dehalogenase, putative  YP_181054  decreased coverage  0.00204473  n/a    Dehalococcoides ethenogenes 195  Bacteria 
 
 
-
 
DET0333  CDS  NC_002936  317053  318402  1350  preprotein translocase subunit SecD  YP_181080  decreased coverage  0.000488895  n/a    Dehalococcoides ethenogenes 195  Bacteria 
 
 
-
 
DET0392  CDS  NC_002936  372979  373809  831  AP endonuclease  YP_181137  decreased coverage  0.000214103  n/a    Dehalococcoides ethenogenes 195  Bacteria 
 
 
-
 
DET0433  CDS  NC_002936  407534  408217  684  hypothetical protein  YP_181177  decreased coverage  0.00529894  n/a    Dehalococcoides ethenogenes 195  Bacteria 
 
 
-
 
DET0506  CDS  NC_002936  461730  462128  399  30S ribosomal protein S9  YP_181250  decreased coverage  8.93397e-06  n/a    Dehalococcoides ethenogenes 195  Bacteria 
 
 
-
 
DET0513  CDS  NC_002936  466677  467933  1257  S-adenosyl-L-homocysteine hydrolase  YP_181257  decreased coverage  0.00244731  n/a    Dehalococcoides ethenogenes 195  Bacteria 
 
 
-
 
DET0522  CDS  NC_002936  475236  475649  414  hypothetical protein  YP_181266  decreased coverage  0.000722837  n/a    Dehalococcoides ethenogenes 195  Bacteria 
 
 
-
 
DET0582  CDS  NC_002936  533991  535055  1065  magnesium and cobalt transport protein CorA  YP_181324  decreased coverage  0.000747796  n/a    Dehalococcoides ethenogenes 195  Bacteria 
 
 
-
 
DET0590  CDS  NC_002936  540536  541540  1005  glyceraldehyde-3-phosphate dehydrogenase, type I  YP_181332  decreased coverage  0.000161937  n/a    Dehalococcoides ethenogenes 195  Bacteria 
 
 
-
 
DET0600  CDS  NC_002936  550943  552031  1089  soluble hydrogenase, tritium exchange subunit  YP_181342  decreased coverage  0.00706485  n/a    Dehalococcoides ethenogenes 195  Bacteria 
 
 
-
 
DET0639  CDS  NC_002936  591194  591883  690  hypothetical protein  YP_181381  decreased coverage  0.00130484  n/a    Dehalococcoides ethenogenes 195  Bacteria 
 
 
-
 
DET0649  CDS  NC_002936  599284  599463  180  hypothetical protein  YP_181391  decreased coverage  2.17019e-05  n/a    Dehalococcoides ethenogenes 195  Bacteria 
 
 
-
 
DET0650  CDS  NC_002936  599608  600624  1017  ABC-type cobalamin/Fe3+-siderophores transport systems, periplasmic binding protein, putative  YP_181392  decreased coverage  0.000661971  n/a    Dehalococcoides ethenogenes 195  Bacteria 
 
 
-
 
DET0657  CDS  NC_002936  605751  606809  1059  nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase  YP_181399  decreased coverage  0.00493685  n/a    Dehalococcoides ethenogenes 195  Bacteria 
 
 
-
 
DET0740  CDS  NC_002936  681298  682152  855  diaminopimelate epimerase  YP_181475  decreased coverage  0.00112553  n/a    Dehalococcoides ethenogenes 195  Bacteria 
 
 
-
 
DET0750  CDS  NC_002936  691099  691458  360  50S ribosomal protein L20  YP_181484  decreased coverage  5.80025e-05  n/a    Dehalococcoides ethenogenes 195  Bacteria 
 
 
-
 
DET0752  CDS  NC_002936  691673  692179  507  translation initiation factor IF-3  YP_181486  decreased coverage  8.93397e-06  n/a    Dehalococcoides ethenogenes 195  Bacteria 
 
 
-
 
DET0794  CDS  NC_002936  731239  732156  918  ABC transporter, ATP-binding protein  YP_181526  decreased coverage  0.00734303  n/a    Dehalococcoides ethenogenes 195  Bacteria 
 
 
-
 
DET0913  CDS  NC_002936  837894  838349  456  hypothetical protein  YP_181638  decreased coverage  0.000596117  n/a    Dehalococcoides ethenogenes 195  Bacteria 
 
 
-
 
DET0914  CDS  NC_002936  838407  839108  702  hypothetical protein  YP_181639  decreased coverage  0.000282954  n/a    Dehalococcoides ethenogenes 195  Bacteria 
 
 
-
 
DET0935  CDS  NC_002936  856258  856914  657  endonuclease III  YP_181660  decreased coverage  3.51084e-05  n/a    Dehalococcoides ethenogenes 195  Bacteria 
 
 
-
 
DET0959  CDS  NC_002936  877880  878182  303  Smr domain-containing protein  YP_181682  decreased coverage  0.00245853  n/a    Dehalococcoides ethenogenes 195  Bacteria 
 
 
-
 
DET0965  CDS  NC_002936  884615  885247  633  membrane protein  YP_181688  decreased coverage  2.15591e-05  n/a    Dehalococcoides ethenogenes 195  Bacteria 
 
 
-
 
DET0977  CDS  NC_002936  896894  897475  582  CDP-alcohol phosphatidyltransferase family protein  YP_181700  decreased coverage  3.21625e-05  n/a    Dehalococcoides ethenogenes 195  Bacteria 
 
 
-
 
DET0978  CDS  NC_002936  897521  898669  1149  glycosyl transferase, group 1 family protein  YP_181701  decreased coverage  0.000355781  n/a    Dehalococcoides ethenogenes 195  Bacteria 
 
 
-
 
DET0985  CDS  NC_002936  903504  904979  1476  transcription elongation factor NusA  YP_181708  decreased coverage  0.00150789  n/a    Dehalococcoides ethenogenes 195  Bacteria 
 
 
-
 
DET1025  CDS  NC_002936  931014  931727  714  ribonuclease III  YP_181741  decreased coverage  0.00427221  n/a    Dehalococcoides ethenogenes 195  Bacteria 
 
 
-
 
DET1044  CDS  NC_002936  948903  949346  444  30S ribosomal protein S18  YP_181760  decreased coverage  8.93397e-06  n/a    Dehalococcoides ethenogenes 195  Bacteria 
 
 
-
 
DET1046  CDS  NC_002936  949837  950166  330  30S ribosomal protein S6  YP_181762  decreased coverage  3.81184e-06  n/a    Dehalococcoides ethenogenes 195  Bacteria 
 
 
-
 
DET1058  CDS  NC_002936  958881  959564  684  DNA-binding response regulator  YP_181773  decreased coverage  0.000187393  n/a    Dehalococcoides ethenogenes 195  Bacteria 
 
 
-
 
DET1126  CDS  NC_002936  1030278  1030949  672  transcriptional regulator  YP_181841  decreased coverage  2.89398e-05  n/a    Dehalococcoides ethenogenes 195  Bacteria 
 
 
-
 
DET1127  CDS  NC_002936  1030971  1031741  771  hypothetical protein  YP_181842  decreased coverage  0.000223973  n/a    Dehalococcoides ethenogenes 195  Bacteria 
 
 
-
 
DET1173  CDS  NC_002936  1070556  1071083  528  fwdE family protein  YP_181887  decreased coverage  1.42876e-05  n/a    Dehalococcoides ethenogenes 195  Bacteria 
 
 
-
 
DET1198  CDS  NC_002936  1093541  1094089  549  bifunctional pyrimidine regulatory protein PyrR uracil phosphoribosyltransferase  YP_181911  decreased coverage  1.34652e-05  n/a    Dehalococcoides ethenogenes 195  Bacteria 
 
 
-
 
DET1199  CDS  NC_002936  1094092  1095087  996  aspartate carbamoyltransferase catalytic subunit  YP_181912  decreased coverage  0.000831641  n/a    Dehalococcoides ethenogenes 195  Bacteria 
 
 
-
 
DET1213  CDS  NC_002936  1113516  1114073  558  hypothetical protein  YP_181926  decreased coverage  0.00201716  n/a    Dehalococcoides ethenogenes 195  Bacteria 
 
 
-
 
DET1238  CDS  NC_002936  1133960  1134778  819  putative lipoprotein  YP_181951  decreased coverage  0.000496143  n/a    Dehalococcoides ethenogenes 195  Bacteria 
 
 
-
 
DET1239  CDS  NC_002936  1134794  1134919  126  hypothetical protein  YP_181952  decreased coverage  2.57401e-05  n/a    Dehalococcoides ethenogenes 195  Bacteria 
 
 
-
 
DET1240  CDS  NC_002936  1134961  1135590  630  peptidyl-prolyl cis-trans isomerase, cyclophilin-type  YP_181953  decreased coverage  1.81585e-05  n/a    Dehalococcoides ethenogenes 195  Bacteria 
 
 
-
 
DET1269  CDS  NC_002936  1157561  1158259  699  HNH endonuclease domain-containing protein  YP_181981  decreased coverage  3.09683e-05  n/a    Dehalococcoides ethenogenes 195  Bacteria 
 
 
-
 
DET1274  CDS  NC_002936  1161667  1162110  444  hypothetical protein  YP_181986  decreased coverage  0.000334048  n/a    Dehalococcoides ethenogenes 195  Bacteria 
 
 
-
 
DET1324  CDS  NC_002936  1201992  1202900  909  hypothetical protein  YP_182035  decreased coverage  0.000450557  n/a    Dehalococcoides ethenogenes 195  Bacteria 
 
 
-
 
DET1350  CDS  NC_002936  1219838  1220515  678  LuxR family DNA-binding response regulator  YP_182061  decreased coverage  0.00111586  n/a    Dehalococcoides ethenogenes 195  Bacteria 
 
 
-
 
DET1355  CDS  NC_002936  1225222  1226349  1128  hypothetical protein  YP_182066  decreased coverage  0.00651759  n/a    Dehalococcoides ethenogenes 195  Bacteria 
 
 
-
 
DET1495  CDS  NC_002936  1352970  1353791  822  hypothetical protein  YP_182195  decreased coverage  0.000420591  n/a    Dehalococcoides ethenogenes 195  Bacteria 
 
 
-
 
DET1555  CDS  NC_002936  1401624  1401842  219  DNA-binding protein  YP_182252  decreased coverage  2.36293e-06  n/a    Dehalococcoides ethenogenes 195  Bacteria 
 
 
-
 
DET1584  CDS  NC_002936  1423779  1424036  258  hypothetical protein  YP_182280  decreased coverage  5.26435e-06  n/a    Dehalococcoides ethenogenes 195  Bacteria 
 
 
-
 
DET_De5S  rRNA  NC_002936  50767  50889  123  5S ribosomal RNA    decreased coverage  0.00210959  n/a    Dehalococcoides ethenogenes 195  Bacteria 
 
 
-
 
DET_tRNA-Arg-3  tRNA  NC_002936  877642  877717  76  tRNA-Arg    decreased coverage  0.00117786  n/a    Dehalococcoides ethenogenes 195  Bacteria 
 
 
-
 
DET_tRNA-Asp-1  tRNA  NC_002936  950330  950406  77  tRNA-Asp    decreased coverage  1.53906e-06  n/a    Dehalococcoides ethenogenes 195  Bacteria 
 
 
-
 
DET_tRNA-His-1  tRNA  NC_002936  877734  877809  76  tRNA-His    decreased coverage  0.00107575  n/a    Dehalococcoides ethenogenes 195  Bacteria 
 
 
-
 
Page 1 of 1    << first  < prev  1  next >  last >>