83 decreased-coverage genes were found for selected organism/s



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Locus tag

Gene type

Replicon accession

From

To

Strand

Gene Length

Product

Protein accession

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Organism name

Kingdom

Coverage Plot

PanDaTox homologs

Experimental validation
BMA0117  CDS  NC_006348  129068  130669  1602  glutamate--cysteine ligase  YP_101961  decreased coverage  0.000417338  n/a    Burkholderia mallei ATCC 23344  Bacteria 
 
 
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BMA0163  CDS  NC_006348  173493  173792  300  aspartyl/glutamyl-tRNA amidotransferase subunit C  YP_102002  decreased coverage  0.00328463  n/a    Burkholderia mallei ATCC 23344  Bacteria 
 
 
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BMA0333  CDS  NC_006348  351645  352973  1329  maltose/mannitol ABC transporter, periplasmic maltose/mannitol-binding protein, putative  YP_102152  decreased coverage  0.00410857  n/a    Burkholderia mallei ATCC 23344  Bacteria 
 
 
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BMA0358  CDS  NC_006348  380721  381941  1221  cyclopropane fatty acid synthase family protein  YP_102176  decreased coverage  1.19082e-07  n/a    Burkholderia mallei ATCC 23344  Bacteria 
 
 
-
 
BMA0361    NC_006348  383990  384837  848      decreased coverage  0.00175282  n/a    Burkholderia mallei ATCC 23344  Bacteria 
 
 
-
 
BMA0464  CDS  NC_006348  491549  492121  573  hypothetical protein  YP_102273  decreased coverage  0.00884521  n/a    Burkholderia mallei ATCC 23344  Bacteria 
 
 
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BMA0502  CDS  NC_006348  529790  531196  1407  multidrug resistance protein NorM, putative  YP_102302  decreased coverage  0.00841305  n/a    Burkholderia mallei ATCC 23344  Bacteria 
 
 
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BMA0520  CDS  NC_006348  545945  549217  3273  ribonuclease E  YP_102317  decreased coverage  0.000787566  n/a    Burkholderia mallei ATCC 23344  Bacteria 
 
 
-
 
BMA0629  CDS  NC_006348  653623  655374  1752  anaerobic ribonucleoside triphosphate reductase  YP_102412  decreased coverage  0.00137002  n/a    Burkholderia mallei ATCC 23344  Bacteria 
 
 
-
 
BMA0667  CDS  NC_006348  690602  691918  1317  sulfate adenylyltransferase, subunit 1  YP_102442  decreased coverage  0.00627764  n/a    Burkholderia mallei ATCC 23344  Bacteria 
 
 
-
 
BMA0743  CDS  NC_006348  774237  775325  1089  outer membrane porin, putative  YP_102511  decreased coverage  0.000425296  n/a    Burkholderia mallei ATCC 23344  Bacteria 
 
 
-
 
BMA0820    NC_006348  856828  859040  2213      decreased coverage  0.00176138  n/a    Burkholderia mallei ATCC 23344  Bacteria 
 
 
-
 
BMA0828    NC_006348  868516  868734  219      decreased coverage  0.000702849  n/a    Burkholderia mallei ATCC 23344  Bacteria 
 
 
-
 
BMA1060  CDS  NC_006348  1108931  1109299  369  ribosome-binding factor A  YP_102759  decreased coverage  0.00435559  n/a    Burkholderia mallei ATCC 23344  Bacteria 
 
 
-
 
BMA1115  CDS  NC_006348  1157000  1157779  780  short chain dehydrogenase  YP_102803  decreased coverage  0.00652763  n/a    Burkholderia mallei ATCC 23344  Bacteria 
 
 
-
 
BMA1120    NC_006348  1161371  1162363  993      decreased coverage  7.33105e-08  n/a    Burkholderia mallei ATCC 23344  Bacteria 
 
 
-
 
BMA1138  CDS  NC_006348  1179239  1180177  939  ABC transporter, periplasmic glycine/betaine-binding protein, putative  YP_102823  decreased coverage  0.00620206  n/a    Burkholderia mallei ATCC 23344  Bacteria 
 
 
-
 
BMA1167  CDS  NC_006348  1211361  1212047  687  carboxylesterase, putative  YP_102852  decreased coverage  0.00098882  n/a    Burkholderia mallei ATCC 23344  Bacteria 
 
 
-
 
BMA1281  CDS  NC_006348  1333794  1334525  732  hypothetical protein  YP_102948  decreased coverage  9.55438e-07  n/a    Burkholderia mallei ATCC 23344  Bacteria 
 
 
-
 
BMA1282  CDS  NC_006348  1334598  1335989  1392  sigma-54 dependent transcriptional regulator  YP_102949  decreased coverage  0.000105625  n/a    Burkholderia mallei ATCC 23344  Bacteria 
 
 
-
 
BMA1331  CDS  NC_006348  1390049  1391941  1893  potassium uptake protein  YP_102991  decreased coverage  0.00641911  n/a    Burkholderia mallei ATCC 23344  Bacteria 
 
 
-
 
BMA1332  CDS  NC_006348  1392232  1392795  564  phosphoribosyl transferase domain-containing protein  YP_102992  decreased coverage  0.00674757  n/a    Burkholderia mallei ATCC 23344  Bacteria 
 
 
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BMA1367  CDS  NC_006348  1424867  1426354  1488  multidrug resistance protein, putative  YP_103026  decreased coverage  0.00190261  n/a    Burkholderia mallei ATCC 23344  Bacteria 
 
 
-
 
BMA1436  CDS  NC_006348  1488582  1489760  1179  acetyl-CoA acetyltransferase  YP_103088  decreased coverage  0.00245654  n/a    Burkholderia mallei ATCC 23344  Bacteria 
 
 
-
 
BMA1438  CDS  NC_006348  1490499  1492583  2085  fatty oxidation complex, alpha subunit, putative  YP_103090  decreased coverage  0.000464457  n/a    Burkholderia mallei ATCC 23344  Bacteria 
 
 
-
 
BMA1458    NC_006348  1514162  1514656  495      decreased coverage  0.00458833  n/a    Burkholderia mallei ATCC 23344  Bacteria 
 
 
-
 
BMA1537  CDS  NC_006348  1593155  1593886  732  phytochelatin synthase, putative  YP_103177  decreased coverage  0.00496705  n/a    Burkholderia mallei ATCC 23344  Bacteria 
 
 
-
 
BMA1538  CDS  NC_006348  1594219  1596120  1902  serine protease  YP_103178  decreased coverage  0.00041451  n/a    Burkholderia mallei ATCC 23344  Bacteria 
 
 
-
 
BMA1539  CDS  NC_006348  1596655  1597470  816  hypothetical protein  YP_103179  decreased coverage  3.39618e-07  n/a    Burkholderia mallei ATCC 23344  Bacteria 
 
 
-
 
BMA1590  CDS  NC_006348  1655480  1657072  1593  malate synthase  YP_103230  decreased coverage  0.00584692  n/a    Burkholderia mallei ATCC 23344  Bacteria 
 
 
-
 
BMA1601  CDS  NC_006348  1663761  1664681  921  patatin-like phospholipase  YP_103238  decreased coverage  1.89293e-06  n/a    Burkholderia mallei ATCC 23344  Bacteria 
 
 
-
 
BMA1605  CDS  NC_006348  1667333  1668430  1098  ABC transporter, permease protein  YP_103242  decreased coverage  2.76043e-05  n/a    Burkholderia mallei ATCC 23344  Bacteria 
 
 
-
 
BMA1607  CDS  NC_006348  1669661  1671613  1953  ABC transporter, periplasmic substrate-binding protein  YP_103243  decreased coverage  0.00266452  n/a    Burkholderia mallei ATCC 23344  Bacteria 
 
 
-
 
BMA1650  CDS  NC_006348  1724208  1724600  393  hypothetical protein  YP_103277  decreased coverage  0.00825839  n/a    Burkholderia mallei ATCC 23344  Bacteria 
 
 
-
 
BMA1653  CDS  NC_006348  1726518  1727987  1470  cell cycle protein mesJ  YP_103279  decreased coverage  0.000820354  n/a    Burkholderia mallei ATCC 23344  Bacteria 
 
 
-
 
BMA1655  CDS  NC_006348  1729106  1729771  666  DNA-3-methyladenine glycosylase  YP_103281  decreased coverage  0.00300264  n/a    Burkholderia mallei ATCC 23344  Bacteria 
 
 
-
 
BMA1657  CDS  NC_006348  1731592  1732443  852  TPR domain-containing protein  YP_103283  decreased coverage  0.000896789  n/a    Burkholderia mallei ATCC 23344  Bacteria 
 
 
-
 
BMA1786  CDS  NC_006348  1878639  1880600  1962  hypothetical protein  YP_103398  decreased coverage  0.00925906  n/a    Burkholderia mallei ATCC 23344  Bacteria 
 
 
-
 
BMA1788    NC_006348  1881685  1882057  373      decreased coverage  2.92112e-07  n/a    Burkholderia mallei ATCC 23344  Bacteria 
 
 
-
 
BMA1793  CDS  NC_006348  1885439  1885573  135  hypothetical protein  YP_103401  decreased coverage  1.33472e-09  n/a    Burkholderia mallei ATCC 23344  Bacteria 
 
 
-
 
BMA1807  CDS  NC_006348  1898884  1899075  192  hypothetical protein  YP_103413  decreased coverage  0.00226443  n/a    Burkholderia mallei ATCC 23344  Bacteria 
 
 
-
 
BMA1808  CDS  NC_006348  1899072  1900334  1263  putative lipoprotein  YP_103414  decreased coverage  0.00934071  n/a    Burkholderia mallei ATCC 23344  Bacteria 
 
 
-
 
BMA1845  CDS  NC_006348  1934828  1935478  651  phosphatidylserine decarboxylase  YP_103448  decreased coverage  0.00789748  n/a    Burkholderia mallei ATCC 23344  Bacteria 
 
 
-
 
BMA1913  CDS  NC_006348  2004881  2008405  3525  DNA polymerase III subunit alpha  YP_103508  decreased coverage  0.00377925  n/a    Burkholderia mallei ATCC 23344  Bacteria 
 
 
-
 
BMA1915  CDS  NC_006348  2009970  2010863  894  glutamyl-Q tRNA(Asp) synthetase  YP_103510  decreased coverage  0.00194048  n/a    Burkholderia mallei ATCC 23344  Bacteria 
 
 
-
 
BMA1970  CDS  NC_006348  2066746  2067450  705  branched-chain amino acid ABC transporter, ATP-binding protein  YP_103560  decreased coverage  7.96203e-07  n/a    Burkholderia mallei ATCC 23344  Bacteria 
 
 
-
 
BMA1971    NC_006348  2067462  2068235  774      decreased coverage  1.13634e-06  n/a    Burkholderia mallei ATCC 23344  Bacteria 
 
 
-
 
BMA2049  CDS  NC_006348  2147128  2148108  981  LysR family transcriptional regulator  YP_103629  decreased coverage  5.35454e-08  n/a    Burkholderia mallei ATCC 23344  Bacteria 
 
 
-
 
BMA2271  CDS  NC_006348  2356335  2357000  666  superoxide dismutase  YP_103834  decreased coverage  0.00171574  n/a    Burkholderia mallei ATCC 23344  Bacteria 
 
 
-
 
BMA2272  CDS  NC_006348  2357110  2358492  1383  exodeoxyribonuclease VII large subunit  YP_103835  decreased coverage  0.00826344  n/a    Burkholderia mallei ATCC 23344  Bacteria 
 
 
-
 
BMA2279  CDS  NC_006348  2363684  2363887  204  cold-shock domain-contain protein  YP_103842  decreased coverage  7.50079e-10  n/a    Burkholderia mallei ATCC 23344  Bacteria 
 
 
-
 
BMA2281  CDS  NC_006348  2364731  2367031  2301  ATP-dependent Clp protease, ATP-binding subunit ClpA  YP_103844  decreased coverage  0.00581286  n/a    Burkholderia mallei ATCC 23344  Bacteria 
 
 
-
 
BMA2617  CDS  NC_006348  2722141  2722671  531  50S ribosomal protein L6  YP_104151  decreased coverage  0.00663642  n/a    Burkholderia mallei ATCC 23344  Bacteria 
 
 
-
 
BMA2618  CDS  NC_006348  2722692  2723087  396  30S ribosomal protein S8  YP_104152  decreased coverage  0.00463445  n/a    Burkholderia mallei ATCC 23344  Bacteria 
 
 
-
 
BMA2630  CDS  NC_006348  2728130  2728444  315  50S ribosomal protein L23  YP_104164  decreased coverage  2.25404e-08  n/a    Burkholderia mallei ATCC 23344  Bacteria 
 
 
-
 
BMA2631  CDS  NC_006348  2728441  2729061  621  50S ribosomal protein L4  YP_104165  decreased coverage  9.57923e-08  n/a    Burkholderia mallei ATCC 23344  Bacteria 
 
 
-
 
BMA2635  CDS  NC_006348  2731603  2733705  2103  elongation factor G  YP_104169  decreased coverage  0.00747031  n/a    Burkholderia mallei ATCC 23344  Bacteria 
 
 
-
 
BMA2649  CDS  NC_006348  2750781  2751971  1191  elongation factor Tu  YP_104181  decreased coverage  5.46153e-05  n/a    Burkholderia mallei ATCC 23344  Bacteria 
 
 
-
 
BMA2653    NC_006348  2752372  2752500  129      decreased coverage  0.000572551  n/a    Burkholderia mallei ATCC 23344  Bacteria 
 
 
-
 
BMA2799  CDS  NC_006348  2885710  2886510  801  transporter, putative  YP_104315  decreased coverage  0.00116321  n/a    Burkholderia mallei ATCC 23344  Bacteria 
 
 
-
 
BMA3383  CDS  NC_006348  3492040  3492990  951  hypothetical protein  YP_104841  decreased coverage  3.31188e-06  n/a    Burkholderia mallei ATCC 23344  Bacteria 
 
 
-
 
BMAA0071  CDS  NC_006349  70452  71795  1344  C4-dicarboxylate transport transcriptional regulatory protein  YP_104919  decreased coverage  0.00283689  n/a    Burkholderia mallei ATCC 23344  Bacteria 
 
 
-
 
BMAA0365  CDS  NC_006349  351917  352207  291  H-NS histone family protein  YP_105166  decreased coverage  4.0716e-07  n/a    Burkholderia mallei ATCC 23344  Bacteria 
 
 
-
 
BMAA0366  CDS  NC_006349  352314  353135  822  hypothetical protein  YP_105167  decreased coverage  4.08038e-06  n/a    Burkholderia mallei ATCC 23344  Bacteria 
 
 
-
 
BMAA0367  CDS  NC_006349  353749  356112  2364  acetyltransferase  YP_105168  decreased coverage  0.00347204  n/a    Burkholderia mallei ATCC 23344  Bacteria 
 
 
-
 
BMAA0416  CDS  NC_006349  410549  411529  981  hypothetical protein  YP_105203  decreased coverage  0.00421416  n/a    Burkholderia mallei ATCC 23344  Bacteria 
 
 
-
 
BMAA0459  CDS  NC_006349  461331  462230  900  rhamnosyltransferase I, subunit A  YP_105231  decreased coverage  1.26343e-05  n/a    Burkholderia mallei ATCC 23344  Bacteria 
 
 
-
 
BMAA0553  CDS  NC_006349  561889  563349  1461  Ser/Thr protein phosphatase family protein  YP_105316  decreased coverage  0.0053942  n/a    Burkholderia mallei ATCC 23344  Bacteria 
 
 
-
 
BMAA0554    NC_006349  563346  564771  1426      decreased coverage  0.000269729  n/a    Burkholderia mallei ATCC 23344  Bacteria 
 
 
-
 
BMAA0824    NC_006349  852798  853870  1073      decreased coverage  0.000475897  n/a    Burkholderia mallei ATCC 23344  Bacteria 
 
 
-
 
BMAA0869  CDS  NC_006349  892021  892854  834  IS407A, transposase OrfB  YP_105562  decreased coverage  0.00570165  n/a    Burkholderia mallei ATCC 23344  Bacteria 
 
 
-
 
BMAA0981  CDS  NC_006349  1002377  1003081  705  protocatechuate 3,4-dioxygenase, beta subunit  YP_105657  decreased coverage  0.00626299  n/a    Burkholderia mallei ATCC 23344  Bacteria 
 
 
-
 
BMAA1511  CDS  NC_006349  1642654  1642917  264  hypothetical protein  YP_338494  decreased coverage  0.00462794  n/a    Burkholderia mallei ATCC 23344  Bacteria 
 
 
-
 
BMAA1517  CDS  NC_006349  1646532  1647593  1062  AraC family transcriptional regulator  YP_106108  decreased coverage  0.000450911  n/a    Burkholderia mallei ATCC 23344  Bacteria 
 
 
-
 
BMAA1520  CDS  NC_006349  1649590  1650045  456  type III secretion chaperone BicP  YP_106111  decreased coverage  0.000722992  n/a    Burkholderia mallei ATCC 23344  Bacteria 
 
 
-
 
BMAA1602  CDS  NC_006349  1739119  1740918  1800  type II/III secretion system protein  YP_106182  decreased coverage  0.0044992  n/a    Burkholderia mallei ATCC 23344  Bacteria 
 
 
-
 
BMAA1604  CDS  NC_006349  1742715  1743194  480  putative PilM  YP_338505  decreased coverage  0.000242802  n/a    Burkholderia mallei ATCC 23344  Bacteria 
 
 
-
 
BMAA1835  CDS  NC_006349  2004178  2005590  1413  ubiquinol oxidase family protein  YP_106386  decreased coverage  0.00477233  n/a    Burkholderia mallei ATCC 23344  Bacteria 
 
 
-
 
BMAA2109  CDS  NC_006349  2313286  2315589  2304  sensor histidine kinase/response regulator  YP_106616  decreased coverage  0.00292967  n/a    Burkholderia mallei ATCC 23344  Bacteria 
 
 
-
 
BMAA2115  CDS  NC_006349  2319361  2320428  1068  parB family protein  YP_106622  decreased coverage  0.00350884  n/a    Burkholderia mallei ATCC 23344  Bacteria 
 
 
-
 
BMAA_Bm23SC  rRNA  NC_006349  557084  559965  2882  23S ribosomal RNA    decreased coverage  0.000573887  n/a    Burkholderia mallei ATCC 23344  Bacteria 
 
 
-
 
BMA_tRNA-Ala-3  tRNA  NC_006348  1661524  1661599  76  tRNA-Ala    decreased coverage  3.54338e-10  n/a    Burkholderia mallei ATCC 23344  Bacteria 
 
 
-
 
BMA_tRNA-Tyr-3  tRNA  NC_006348  2752250  2752335  86  tRNA-Tyr    decreased coverage  0.000509746  n/a    Burkholderia mallei ATCC 23344  Bacteria 
 
 
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