194 decreased-coverage genes were found for selected organism/s



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Locus tag

Gene type

Replicon accession

From

To

Strand

Gene Length

Product

Protein accession

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Organism name

Kingdom

Coverage Plot

PanDaTox homologs

Experimental validation
Ava_0074  CDS  NC_007413  97546  98019  474  gas vesicle protein GVPa  YP_320595  normal  0.112832  decreased coverage  0.000485271  Anabaena variabilis ATCC 29413  Bacteria 
 
 
-
 
Ava_0075  CDS  NC_007413  98163  98609  447  gas vesicle protein GVPa  YP_320596  normal  0.0645865  decreased coverage  0.000500428  Anabaena variabilis ATCC 29413  Bacteria 
 
 
-
 
Ava_0076  CDS  NC_007413  98606  99862  1257  ATPase associated with various cellular activities  YP_320597  normal  0.0615822  decreased coverage  0.000700861  Anabaena variabilis ATCC 29413  Bacteria 
 
 
-
 
Ava_0078  CDS  NC_007413  100886  101101  216  gas vesicle synthesis protein GvpA  YP_320599  decreased coverage  0.00750449  normal  0.0121047  Anabaena variabilis ATCC 29413  Bacteria 
 
 
-
 
Ava_0080  CDS  NC_007413  101885  102151  267  hypothetical protein  YP_320601  decreased coverage  0.00889015  normal  0.0110811  Anabaena variabilis ATCC 29413  Bacteria 
 
 
-
 
Ava_0084  CDS  NC_007413  112628  114013  1386  Serine/threonine protein kinase  YP_320605  decreased coverage  0.00298009  normal  0.0808498  Anabaena variabilis ATCC 29413  Bacteria 
 
 
-
 
Ava_0085  CDS  NC_007413  114051  114953  903  sensor protein  YP_320606  decreased coverage  0.00149715  normal  0.0726608  Anabaena variabilis ATCC 29413  Bacteria 
 
 
-
 
Ava_0105  CDS  NC_007413  139620  140966  1347  nitrilotriacetate monooxygenase component A  YP_320626  normal  decreased coverage  0.00568077  Anabaena variabilis ATCC 29413  Bacteria 
 
 
-
 
Ava_0107  CDS  NC_007413  142731  144002  1272  hypothetical protein  YP_320628  normal  decreased coverage  0.0053883  Anabaena variabilis ATCC 29413  Bacteria 
 
 
-
 
Ava_0108  CDS  NC_007413  144254  145258  1005  aldo/keto reductase  YP_320629  normal  decreased coverage  0.00484238  Anabaena variabilis ATCC 29413  Bacteria 
 
 
-
 
Ava_0109  CDS  NC_007413  145357  146028  672  HAD family hydrolase  YP_320630  normal  decreased coverage  0.00453013  Anabaena variabilis ATCC 29413  Bacteria 
 
 
-
 
Ava_0110  CDS  NC_007413  146216  147094  879  sodium symporter  YP_320631  normal  decreased coverage  0.00528068  Anabaena variabilis ATCC 29413  Bacteria 
 
 
-
 
Ava_0111  CDS  NC_007413  147337  149697  2361  sulfatase  YP_320632  normal  decreased coverage  0.00321161  Anabaena variabilis ATCC 29413  Bacteria 
 
 
-
 
Ava_0137  CDS  NC_007413  181150  181488  339  nitrogen regulatory protein P-II  YP_320658  decreased coverage  1.50493e-07  normal  Anabaena variabilis ATCC 29413  Bacteria 
 
 
-
 
Ava_0177  CDS  NC_007413  231056  231850  795  phosphonate ABC transporter permease  YP_320698  decreased coverage  1.32377e-06  normal  0.0614362  Anabaena variabilis ATCC 29413  Bacteria 
 
 
-
 
Ava_0178  CDS  NC_007413  231996  232730  735  ABC transporter-like  YP_320699  decreased coverage  1.18822e-06  normal  0.0540962  Anabaena variabilis ATCC 29413  Bacteria 
 
 
-
 
Ava_0186  CDS  NC_007413  243218  243574  357  hypothetical protein  YP_320707  normal  decreased coverage  0.00945872  Anabaena variabilis ATCC 29413  Bacteria 
 
 
-
 
Ava_0187  CDS  NC_007413  243809  244135  327  thioredoxin  YP_320708  normal  decreased coverage  0.00849594  Anabaena variabilis ATCC 29413  Bacteria 
 
 
-
 
Ava_0220  CDS  NC_007413  279866  281974  2109  Serine/threonine protein kinase  YP_320741  decreased coverage  8.03094e-05  normal  Anabaena variabilis ATCC 29413  Bacteria 
 
 
-
 
Ava_0254  CDS  NC_007413  325570  327417  1848  von Willebrand factor, type A  YP_320775  decreased coverage  4.06076e-08  normal  Anabaena variabilis ATCC 29413  Bacteria 
 
 
-
 
Ava_0348  CDS  NC_007413  446643  448334  1692  TPR repeat-containing protein  YP_320869  normal  0.216855  decreased coverage  0.00958266  Anabaena variabilis ATCC 29413  Bacteria 
 
 
-
 
Ava_0556  CDS  NC_007413  701136  701996  861  hypothetical protein  YP_321075  decreased coverage  0.00548789  normal  0.0576892  Anabaena variabilis ATCC 29413  Bacteria 
 
 
-
 
Ava_0608  CDS  NC_007413  764143  764343  201  hypothetical protein  YP_321127  decreased coverage  2.46064e-05  normal  0.552751  Anabaena variabilis ATCC 29413  Bacteria 
 
 
-
 
Ava_0609  CDS  NC_007413  765527  766978  1452  neutral invertase  YP_321128  decreased coverage  0.00065977  normal  0.697444  Anabaena variabilis ATCC 29413  Bacteria 
 
 
-
 
Ava_0656  CDS  NC_007413  836304  837203  900  Alpha/beta hydrolase fold  YP_321175  normal  0.198236  decreased coverage  0.00768241  Anabaena variabilis ATCC 29413  Bacteria 
 
 
-
 
Ava_0660  CDS  NC_007413  840593  841345  753  N-acetylmannosaminyltransferase  YP_321179  decreased coverage  2.89682e-11  normal  0.0689517  Anabaena variabilis ATCC 29413  Bacteria 
 
 
-
 
Ava_0732  CDS  NC_007413  904518  905963  1446  hypothetical protein  YP_321251  decreased coverage  0.00108673  normal  Anabaena variabilis ATCC 29413  Bacteria 
 
 
-
 
Ava_0748  CDS  NC_007413  923671  925173  1503  NAD(P)H-quinone oxidoreductase subunit M  YP_321267  decreased coverage  0.00127358  normal  Anabaena variabilis ATCC 29413  Bacteria 
 
 
-
 
Ava_0819  CDS  NC_007413  999067  999732  666  endonuclease V  YP_321338  decreased coverage  8.67821e-06  normal  Anabaena variabilis ATCC 29413  Bacteria 
 
 
-
 
Ava_0844  CDS  NC_007413  1029574  1030518  945  glycosyl transferase family protein  YP_321363  normal  0.0881511  decreased coverage  0.00160187  Anabaena variabilis ATCC 29413  Bacteria 
 
 
-
 
Ava_0845  CDS  NC_007413  1030561  1031691  1131  polysaccharide pyruvyl transferase  YP_321364  normal  0.355867  decreased coverage  0.00186143  Anabaena variabilis ATCC 29413  Bacteria 
 
 
-
 
Ava_0873  CDS  NC_007413  1067527  1068717  1191  histidine kinase  YP_321392  decreased coverage  0.00136581  normal  0.0338555  Anabaena variabilis ATCC 29413  Bacteria 
 
 
-
 
Ava_0981  CDS  NC_007413  1182118  1182486  369  ferredoxin (2Fe-2S)  YP_321500  decreased coverage  1.66855e-11  normal  0.987662  Anabaena variabilis ATCC 29413  Bacteria 
 
 
-
 
Ava_0982  CDS  NC_007413  1182476  1183225  750  nuclease (SNase-like)  YP_321501  decreased coverage  1.01814e-10  normal  Anabaena variabilis ATCC 29413  Bacteria 
 
 
-
 
Ava_0989  CDS  NC_007413  1189057  1190214  1158  ionotropic glutamate receptor  YP_321508  decreased coverage  0.00799659  normal  0.390721  Anabaena variabilis ATCC 29413  Bacteria 
 
 
-
 
Ava_0994  CDS  NC_007413  1196083  1197255  1173  hypothetical protein  YP_321513  decreased coverage  1.86232e-09  normal  0.0867734  Anabaena variabilis ATCC 29413  Bacteria 
 
 
-
 
Ava_1005  CDS  NC_007413  1214166  1216106  1941  multi-sensor Signal transduction histidine kinase  YP_321524  normal  0.442988  decreased coverage  2.17029e-05  Anabaena variabilis ATCC 29413  Bacteria 
 
 
-
 
Ava_1008  CDS  NC_007413  1217486  1218586  1101  Holliday junction DNA helicase RuvB  YP_321527  decreased coverage  2.28051e-05  hitchhiker  0.00140746  Anabaena variabilis ATCC 29413  Bacteria 
 
 
-
 
Ava_1042  CDS  NC_007413  1267052  1268704  1653  methyltransferase FkbM  YP_321561  decreased coverage  0.000399946  hitchhiker  0.00660065  Anabaena variabilis ATCC 29413  Bacteria 
 
 
-
 
Ava_1058  CDS  NC_007413  1288316  1289086  771  hypothetical protein  YP_321577  hitchhiker  4.05542e-05  decreased coverage  2.33406e-06  Anabaena variabilis ATCC 29413  Bacteria 
 
 
-
 
Ava_1059  CDS  NC_007413  1289541  1290719  1179  peptidase M20D, amidohydrolase  YP_321578  hitchhiker  9.96259e-08  decreased coverage  2.7158e-06  Anabaena variabilis ATCC 29413  Bacteria 
 
 
-
 
Ava_1060  CDS  NC_007413  1290899  1291492  594  hypothetical protein  YP_321579  unclonable  1.22836e-13  decreased coverage  2.22645e-06  Anabaena variabilis ATCC 29413  Bacteria 
 
 
-
 
Ava_1061  CDS  NC_007413  1291725  1293314  1590  cobalamin B12-binding  YP_321580  hitchhiker  4.12719e-07  decreased coverage  3.67319e-06  Anabaena variabilis ATCC 29413  Bacteria 
 
 
-
 
Ava_1062  CDS  NC_007413  1293696  1294319  624  NAD(P)H dehydrogenase (quinone)  YP_321581  hitchhiker  0.00142617  decreased coverage  2.37921e-06  Anabaena variabilis ATCC 29413  Bacteria 
 
 
-
 
Ava_1143  CDS  NC_007413  1400667  1402421  1755  surface antigen (D15)  YP_321662  normal  0.0908627  decreased coverage  0.00528068  Anabaena variabilis ATCC 29413  Bacteria 
 
 
-
 
Ava_1172  CDS  NC_007413  1440517  1441869  1353  divalent cation transporter  YP_321691  decreased coverage  9.87618e-08  normal  Anabaena variabilis ATCC 29413  Bacteria 
 
 
-
 
Ava_1232  CDS  NC_007413  1517885  1519219  1335  heterocyst specific ABC-transporter, membrane fusion protein DevB  YP_321751  decreased coverage  1.00981e-06  normal  Anabaena variabilis ATCC 29413  Bacteria 
 
 
-
 
Ava_1281  CDS  NC_007413  1570487  1572550  2064  ribonuclease E and G  YP_321800  decreased coverage  6.95712e-06  normal  Anabaena variabilis ATCC 29413  Bacteria 
 
 
-
 
Ava_1288  CDS  NC_007413  1578140  1580218  2079  elongation factor G  YP_321807  decreased coverage  5.56702e-06  normal  Anabaena variabilis ATCC 29413  Bacteria 
 
 
-
 
Ava_1321  CDS  NC_007413  1619306  1619521  216  30S ribosomal protein S18  YP_321840  decreased coverage  7.49157e-08  normal  Anabaena variabilis ATCC 29413  Bacteria 
 
 
-
 
Ava_1322  CDS  NC_007413  1619736  1621796  2061  ribonuclease II  YP_321841  decreased coverage  5.61831e-05  normal  Anabaena variabilis ATCC 29413  Bacteria 
 
 
-
 
Ava_1393  CDS  NC_007413  1720009  1721127  1119  hypothetical protein  YP_321911  decreased coverage  0.00484558  normal  0.314593  Anabaena variabilis ATCC 29413  Bacteria 
 
 
-
 
Ava_1401  CDS  NC_007413  1731299  1731715  417  hypothetical protein  YP_321919  decreased coverage  0.00927193  normal  Anabaena variabilis ATCC 29413  Bacteria 
 
 
-
 
Ava_1478  CDS  NC_007413  1823334  1823828  495  photosystem I reaction center protein PsaF, subunit III  YP_321996  decreased coverage  1.94219e-12  normal  Anabaena variabilis ATCC 29413  Bacteria 
 
 
-
 
Ava_1479  CDS  NC_007413  1824112  1825152  1041  putative DNA-binding/iron metalloprotein/AP endonuclease  YP_321997  decreased coverage  3.98571e-11  normal  Anabaena variabilis ATCC 29413  Bacteria 
 
 
-
 
Ava_1517  CDS  NC_007413  1865572  1866666  1095  hypothetical protein  YP_322035  decreased coverage  0.000966752  normal  Anabaena variabilis ATCC 29413  Bacteria 
 
 
-
 
Ava_1525  CDS  NC_007413  1874054  1874956  903  hypothetical protein  YP_322043  decreased coverage  1.56239e-08  normal  0.510187  Anabaena variabilis ATCC 29413  Bacteria 
 
 
-
 
Ava_1664  CDS  NC_007413  2088705  2089298  594  hypothetical protein  YP_322182  decreased coverage  4.8435e-05  normal  0.115526  Anabaena variabilis ATCC 29413  Bacteria 
 
 
-
 
Ava_1674  CDS  NC_007413  2100330  2101772  1443  cytochrome bd ubiquinol oxidase, subunit I  YP_322192  decreased coverage  0.00374915  normal  Anabaena variabilis ATCC 29413  Bacteria 
 
 
-
 
Ava_1696  CDS  NC_007413  2126257  2126643  387  hypothetical protein  YP_322213  decreased coverage  0.000290401  normal  Anabaena variabilis ATCC 29413  Bacteria 
 
 
-
 
Ava_1752  CDS  NC_007413  2186597  2187412  816  HAD family hydrolase  YP_322269  decreased coverage  0.00695054  normal  Anabaena variabilis ATCC 29413  Bacteria 
 
 
-
 
Ava_1780  CDS  NC_007413  2219777  2221132  1356  hypothetical protein  YP_322297  decreased coverage  0.00564073  normal  0.896313  Anabaena variabilis ATCC 29413  Bacteria 
 
 
-
 
Ava_1902  CDS  NC_007413  2362322  2363191  870  phosphate ABC transporter permease  YP_322419  normal  0.462595  decreased coverage  0.00664679  Anabaena variabilis ATCC 29413  Bacteria 
 
 
-
 
Ava_1903  CDS  NC_007413  2363408  2363695  288  hypothetical protein  YP_322420  normal  0.0638518  decreased coverage  0.00545954  Anabaena variabilis ATCC 29413  Bacteria 
 
 
-
 
Ava_1905  CDS  NC_007413  2366836  2367819  984  RNA polymerase sigma factor  YP_322422  decreased coverage  2.25231e-11  normal  0.0162266  Anabaena variabilis ATCC 29413  Bacteria 
 
 
-
 
Ava_1963  CDS  NC_007413  2440029  2440991  963  DNA polymerase III subunit delta'  YP_322480  decreased coverage  0.00141399  normal  Anabaena variabilis ATCC 29413  Bacteria 
 
 
-
 
Ava_1974  CDS  NC_007413  2448511  2449785  1275  hypothetical protein  YP_322491  decreased coverage  0.00936884  normal  0.989231  Anabaena variabilis ATCC 29413  Bacteria 
 
 
-
 
Ava_2252  CDS  NC_007413  2802629  2804197  1569  alkaline phosphatase  YP_322765  decreased coverage  0.00266455  normal  Anabaena variabilis ATCC 29413  Bacteria 
 
 
-
 
Ava_2254  CDS  NC_007413  2810188  2810862  675  LuxR family transcriptional regulator  YP_322767  decreased coverage  7.50634e-07  normal  Anabaena variabilis ATCC 29413  Bacteria 
 
 
-
 
Ava_2391  CDS  NC_007413  2972024  2972569  546  hypothetical protein  YP_322904  decreased coverage  2.89093e-05  hitchhiker  3.49979e-05  Anabaena variabilis ATCC 29413  Bacteria 
 
 
-
 
Ava_2394  CDS  NC_007413  2974646  2976868  2223  hypothetical protein  YP_322906  decreased coverage  0.000509541  hitchhiker  6.24153e-05  Anabaena variabilis ATCC 29413  Bacteria 
 
 
-
 
Ava_2413  CDS  NC_007413  3001113  3001646  534  condensin subunit ScpB  YP_322925  decreased coverage  5.81218e-12  unclonable  8.85843e-08  Anabaena variabilis ATCC 29413  Bacteria 
 
 
-
 
Ava_2444  CDS  NC_007413  3034506  3036407  1902  FtsH peptidase  YP_322954  decreased coverage  0.000343724  normal  Anabaena variabilis ATCC 29413  Bacteria 
 
 
-
 
Ava_2548  CDS  NC_007413  3151356  3152066  711  TetR family transcriptional regulator  YP_323058  decreased coverage  9.44763e-09  normal  Anabaena variabilis ATCC 29413  Bacteria 
 
 
-
 
Ava_2549  CDS  NC_007413  3152228  3152620  393  50S ribosomal protein L19  YP_323059  decreased coverage  1.88294e-09  normal  Anabaena variabilis ATCC 29413  Bacteria 
 
 
-
 
Ava_2609  CDS  NC_007413  3231418  3232047  630  hypothetical protein  YP_323119  decreased coverage  0.00582159  normal  Anabaena variabilis ATCC 29413  Bacteria 
 
 
-
 
Ava_2623  CDS  NC_007413  3246105  3246311  207  CpcD phycobilisome linker-like  YP_323132  decreased coverage  6.6809e-13  normal  Anabaena variabilis ATCC 29413  Bacteria 
 
 
-
 
Ava_2624  CDS  NC_007413  3246478  3247293  816  hypothetical protein  YP_323133  decreased coverage  1.53014e-11  normal  Anabaena variabilis ATCC 29413  Bacteria 
 
 
-
 
Ava_2625  CDS  NC_007413  3247301  3247741  441  hypothetical protein  YP_323134  decreased coverage  2.22525e-12  normal  Anabaena variabilis ATCC 29413  Bacteria 
 
 
-
 
Ava_2626  CDS  NC_007413  3247943  3248167  225  hypothetical protein  YP_323135  decreased coverage  6.9462e-13  normal  Anabaena variabilis ATCC 29413  Bacteria 
 
 
-
 
Ava_2627  CDS  NC_007413  3248245  3248490  246  hypothetical protein  YP_323136  decreased coverage  7.43637e-13  normal  Anabaena variabilis ATCC 29413  Bacteria 
 
 
-
 
Ava_2664  CDS  NC_007413  3295254  3295460  207  hypothetical protein  YP_323172  decreased coverage  0.00725886  normal  Anabaena variabilis ATCC 29413  Bacteria 
 
 
-
 
Ava_2704  CDS  NC_007413  3341484  3342413  930  farnesyl-diphosphate synthase  YP_323212  decreased coverage  1.53186e-06  normal  0.671867  Anabaena variabilis ATCC 29413  Bacteria 
 
 
-
 
Ava_2789  CDS  NC_007413  3442322  3443215  894  hypothetical protein  YP_323297  decreased coverage  0.00516287  normal  Anabaena variabilis ATCC 29413  Bacteria 
 
 
-
 
Ava_2793  CDS  NC_007413  3447731  3448099  369  hypothetical protein  YP_323301  decreased coverage  0.000246672  normal  0.667441  Anabaena variabilis ATCC 29413  Bacteria 
 
 
-
 
Ava_2840  CDS  NC_007413  3518094  3520643  2550  TonB-dependent siderophore receptor  YP_323348  decreased coverage  6.8938e-06  normal  0.338102  Anabaena variabilis ATCC 29413  Bacteria 
 
 
-
 
Ava_2916  CDS  NC_007413  3623116  3623334  219  high light inducible protein  YP_323422  decreased coverage  1.94255e-05  normal  0.0166899  Anabaena variabilis ATCC 29413  Bacteria 
 
 
-
 
Ava_2917  CDS  NC_007413  3623508  3624230  723  thymidylate synthase complementing protein ThyX  YP_323423  decreased coverage  3.86154e-05  normal  0.0185293  Anabaena variabilis ATCC 29413  Bacteria 
 
 
-
 
Ava_2984  CDS  NC_007413  3702420  3704051  1632  hypothetical protein  YP_323489  decreased coverage  0.000954014  normal  Anabaena variabilis ATCC 29413  Bacteria 
 
 
-
 
Ava_3043  CDS  NC_007413  3767386  3770754  3369  multi-sensor hybrid histidine kinase  YP_323548  decreased coverage  0.000641159  normal  Anabaena variabilis ATCC 29413  Bacteria 
 
 
-
 
Ava_3092  CDS  NC_007413  3843677  3844837  1161  Phage integrase  YP_323596  decreased coverage  7.12508e-06  normal  0.602347  Anabaena variabilis ATCC 29413  Bacteria 
 
 
-
 
Ava_3095  CDS  NC_007413  3849463  3849978  516  hypothetical protein  YP_323599  decreased coverage  1.14563e-05  normal  0.228876  Anabaena variabilis ATCC 29413  Bacteria 
 
 
-
 
Ava_3149  CDS  NC_007413  3911496  3912053  558  hypothetical protein  YP_323652  decreased coverage  0.00139677  normal  Anabaena variabilis ATCC 29413  Bacteria 
 
 
-
 
Ava_3150  CDS  NC_007413  3912207  3913892  1686  lysyl-tRNA synthetase  YP_323653  decreased coverage  0.000153086  normal  Anabaena variabilis ATCC 29413  Bacteria 
 
 
-
 
Ava_3195  CDS  NC_007413  3970284  3972548  2265  peptidoglycan-binding LysM  YP_323698  unclonable  9.99045e-10  decreased coverage  6.82898e-06  Anabaena variabilis ATCC 29413  Bacteria 
 
 
-
 
Ava_3196  CDS  NC_007413  3972621  3973538  918  S-adenosyl-methyltransferase MraW  YP_323699  normal  0.421638  decreased coverage  3.74346e-06  Anabaena variabilis ATCC 29413  Bacteria 
 
 
-
 
Ava_3197  CDS  NC_007413  3973691  3975595  1905  Zn-dependent protease with chaperone function-like  YP_323700  normal  decreased coverage  5.40143e-06  Anabaena variabilis ATCC 29413  Bacteria 
 
 
-
 
Ava_3244  CDS  NC_007413  4032072  4034471  2400  signal transduction protein  YP_323747  decreased coverage  0.0094323  normal  Anabaena variabilis ATCC 29413  Bacteria 
 
 
-
 
Ava_3248  CDS  NC_007413  4039478  4040728  1251  hypothetical protein  YP_323751  decreased coverage  2.38215e-05  normal  0.26381  Anabaena variabilis ATCC 29413  Bacteria 
 
 
-
 
Ava_3255  CDS  NC_007413  4055043  4056107  1065  TPR repeat-containing protein  YP_323758  normal  decreased coverage  0.00360912  Anabaena variabilis ATCC 29413  Bacteria 
 
 
-
 
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