31 decreased-coverage genes were found for selected organism/s



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Locus tag

Gene type

Replicon accession

From

To

Strand

Gene Length

Product

Protein accession

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Organism name

Kingdom

Coverage Plot

PanDaTox homologs

Experimental validation
DehaBAV1_0153  CDS  NC_009455  152771  153682  912  hypothetical protein  YP_001213622  decreased coverage  0.00374289  n/a    Dehalococcoides sp. BAV1  Bacteria 
 
 
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DehaBAV1_0154  CDS  NC_009455  153774  154277  504  rubredoxin-type Fe(Cys)4 protein  YP_001213623  decreased coverage  0.00592628  n/a    Dehalococcoides sp. BAV1  Bacteria 
 
 
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DehaBAV1_0365  CDS  NC_009455  373077  374222  1146  inosine 5-monophosphate dehydrogenase  YP_001213828  decreased coverage  4.05165e-06  n/a    Dehalococcoides sp. BAV1  Bacteria 
 
 
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DehaBAV1_0406  CDS  NC_009455  409570  410751  1182  phosphopantothenoylcysteine decarboxylase / phosphopantothenate-cysteine ligase  YP_001213869  decreased coverage  9.09817e-06  n/a    Dehalococcoides sp. BAV1  Bacteria 
 
 
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DehaBAV1_0481  CDS  NC_009455  468359  469099  741  tRNA pseudouridine synthase A  YP_001213944  decreased coverage  8.9193e-08  n/a    Dehalococcoides sp. BAV1  Bacteria 
 
 
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DehaBAV1_0482  CDS  NC_009455  469101  469532  432  50S ribosomal protein L13  YP_001213945  decreased coverage  1.50083e-08  n/a    Dehalococcoides sp. BAV1  Bacteria 
 
 
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DehaBAV1_0599  CDS  NC_009455  589599  589940  342  hypothetical protein  YP_001214062  decreased coverage  0.000657339  n/a    Dehalococcoides sp. BAV1  Bacteria 
 
 
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DehaBAV1_0600  CDS  NC_009455  590013  591278  1266  hypothetical protein  YP_001214063  decreased coverage  0.00117925  n/a    Dehalococcoides sp. BAV1  Bacteria 
 
 
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DehaBAV1_0693  CDS  NC_009455  684764  684994  231  hypothetical protein  YP_001214155  decreased coverage  4.16203e-09  n/a    Dehalococcoides sp. BAV1  Bacteria 
 
 
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DehaBAV1_0735  CDS  NC_009455  723905  724660  756  ABC transporter related  YP_001214197  decreased coverage  7.63972e-07  n/a    Dehalococcoides sp. BAV1  Bacteria 
 
 
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DehaBAV1_0745  CDS  NC_009455  733201  734298  1098  3-isopropylmalate dehydrogenase  YP_001214207  decreased coverage  2.47717e-06  n/a    Dehalococcoides sp. BAV1  Bacteria 
 
 
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DehaBAV1_0754  CDS  NC_009455  743280  743921  642  translation factor SUA5  YP_001214216  decreased coverage  0.00690198  n/a    Dehalococcoides sp. BAV1  Bacteria 
 
 
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DehaBAV1_0776  CDS  NC_009455  763672  764808  1137  putative oxygen-independent coproporphyrinogen III oxidase  YP_001214237  decreased coverage  0.00749552  n/a    Dehalococcoides sp. BAV1  Bacteria 
 
 
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DehaBAV1_0777  CDS  NC_009455  764872  766689  1818  GTP-binding protein LepA  YP_001214238  decreased coverage  1.66546e-05  n/a    Dehalococcoides sp. BAV1  Bacteria 
 
 
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DehaBAV1_0778  CDS  NC_009455  766830  768776  1947  ech hydrogenase subunit A  YP_001214239  decreased coverage  0.00297843  n/a    Dehalococcoides sp. BAV1  Bacteria 
 
 
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DehaBAV1_0927  CDS  NC_009455  913552  913995  444  30S ribosomal protein S18  YP_001214385  decreased coverage  2.27736e-08  n/a    Dehalococcoides sp. BAV1  Bacteria 
 
 
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DehaBAV1_1137  CDS  NC_009455  1120653  1120907  255  50S ribosomal protein L27  YP_001214594  decreased coverage  0.00024272  n/a    Dehalococcoides sp. BAV1  Bacteria 
 
 
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DehaBAV1_1138  CDS  NC_009455  1120914  1121120  207  50S ribosomal protein L31  YP_001214595  decreased coverage  0.000594554  n/a    Dehalococcoides sp. BAV1  Bacteria 
 
 
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DehaBAV1_1139  CDS  NC_009455  1121200  1122120  921  hypothetical protein  YP_001214596  decreased coverage  0.00478195  n/a    Dehalococcoides sp. BAV1  Bacteria 
 
 
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DehaBAV1_1195  CDS  NC_009455  1169465  1170721  1257  (dimethylallyl)adenosine tRNA methylthiotransferase  YP_001214652  decreased coverage  0.00789069  n/a    Dehalococcoides sp. BAV1  Bacteria 
 
 
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DehaBAV1_1202  CDS  NC_009455  1176861  1177439  579  hypothetical protein  YP_001214659  decreased coverage  0.0030878  n/a    Dehalococcoides sp. BAV1  Bacteria 
 
 
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DehaBAV1_1235  CDS  NC_009455  1215908  1216204  297  chaperonin Cpn10  YP_001214692  decreased coverage  0.000309025  n/a    Dehalococcoides sp. BAV1  Bacteria 
 
 
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DehaBAV1_1250  CDS  NC_009455  1228730  1228870  141  hypothetical protein  YP_001214707  decreased coverage  1.41622e-08  n/a    Dehalococcoides sp. BAV1  Bacteria 
 
 
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DehaBAV1_1251  CDS  NC_009455  1228961  1229572  612  multiple antibiotic resistance (MarC)-related protein  YP_001214708  decreased coverage  8.66197e-08  n/a    Dehalococcoides sp. BAV1  Bacteria 
 
 
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DehaBAV1_1259  CDS  NC_009455  1234290  1234991  702  amidophosphoribosyltransferase-like protein  YP_001214716  decreased coverage  1.70778e-06  n/a    Dehalococcoides sp. BAV1  Bacteria 
 
 
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DehaBAV1_1324  CDS  NC_009455  1288888  1290264  1377  MscS mechanosensitive ion channel  YP_001214779  decreased coverage  0.00452452  n/a    Dehalococcoides sp. BAV1  Bacteria 
 
 
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DehaBAV1_1334  CDS  NC_009455  1296842  1297408  567  LemA family protein  YP_001214789  decreased coverage  1.95542e-07  n/a    Dehalococcoides sp. BAV1  Bacteria 
 
 
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DehaBAV1_1342  CDS  NC_009455  1303413  1304447  1035  ApbE family lipoprotein  YP_001214797  decreased coverage  2.74029e-06  n/a    Dehalococcoides sp. BAV1  Bacteria 
 
 
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DehaBAV1_1343  CDS  NC_009455  1304530  1305723  1194  FMN-binding domain-containing protein  YP_001214798  decreased coverage  5.79258e-07  n/a    Dehalococcoides sp. BAV1  Bacteria 
 
 
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DehaBAV1_1360  CDS  NC_009455  1318024  1319271  1248  2-isopropylmalate synthase  YP_001214815  decreased coverage  0.000911015  n/a    Dehalococcoides sp. BAV1  Bacteria 
 
 
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DehaBAV1_R0001  rRNA  NC_009455  47151  50104  2954  23S ribosomal RNA    decreased coverage  0.00828504  n/a    Dehalococcoides sp. BAV1  Bacteria 
 
 
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