60 decreased-coverage genes were found for selected organism/s



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Locus tag

Gene type

Replicon accession

From

To

Strand

Gene Length

Product

Protein accession

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Organism name

Kingdom

Coverage Plot

PanDaTox homologs

Experimental validation
BLD_0047  CDS  NC_010816  58838  59908  1071  ribose/xylose/arabinose/galactoside ABC transporter permease  YP_001953991  decreased coverage  6.57164e-06  n/a    Bifidobacterium longum DJO10A  Bacteria 
 
 
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BLD_0052  CDS  NC_010816  64862  65494  633  hypothetical protein  YP_001953996  decreased coverage  7.26443e-06  n/a    Bifidobacterium longum DJO10A  Bacteria 
 
 
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BLD_0135  CDS  NC_010816  161293  162537  1245  tRNA-dihydrouridine synthase  YP_001954079  decreased coverage  0.000169706  n/a    Bifidobacterium longum DJO10A  Bacteria 
 
 
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BLD_0139  CDS  NC_010816  164916  166274  1359  putative cell division initiation protein  YP_001954083  decreased coverage  0.00239909  n/a    Bifidobacterium longum DJO10A  Bacteria 
 
 
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BLD_0225  CDS  NC_010816  286462  287406  945  galactose mutarotase  YP_001954169  decreased coverage  5.00571e-06  n/a    Bifidobacterium longum DJO10A  Bacteria 
 
 
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BLD_0282  CDS  NC_010816  351778  352287  510  Xre family transcriptional regulator  YP_001954226  decreased coverage  0.00774991  n/a    Bifidobacterium longum DJO10A  Bacteria 
 
 
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BLD_0307  CDS  NC_010816  385963  386439  477  dUTPase  YP_001954251  decreased coverage  1.95084e-07  n/a    Bifidobacterium longum DJO10A  Bacteria 
 
 
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BLD_0313  CDS  NC_010816  392767  393012  246  transposase  YP_001954257  decreased coverage  0.000212101  n/a    Bifidobacterium longum DJO10A  Bacteria 
 
 
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BLD_0314  CDS  NC_010816  393248  394177  930  transposase  YP_001954258  decreased coverage  0.00173653  n/a    Bifidobacterium longum DJO10A  Bacteria 
 
 
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BLD_0371  CDS  NC_010816  448283  448585  303  hypothetical protein  YP_001954315  decreased coverage  0.000400561  n/a    Bifidobacterium longum DJO10A  Bacteria 
 
 
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BLD_0372  CDS  NC_010816  448623  449105  483  hypothetical protein  YP_001954316  decreased coverage  0.000205962  n/a    Bifidobacterium longum DJO10A  Bacteria 
 
 
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BLD_0404  CDS  NC_010816  484694  485545  852  elongation factor Ts  YP_001954348  decreased coverage  1.67696e-05  n/a    Bifidobacterium longum DJO10A  Bacteria 
 
 
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BLD_0434  CDS  NC_010816  519292  519540  249  preprotein translocase subunit SecG  YP_001954378  decreased coverage  0.00104862  n/a    Bifidobacterium longum DJO10A  Bacteria 
 
 
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BLD_0447  CDS  NC_010816  534032  534865  834  hypothetical protein  YP_001954391  decreased coverage  1.6468e-05  n/a    Bifidobacterium longum DJO10A  Bacteria 
 
 
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BLD_0577  CDS  NC_010816  659840  661204  1365  Na+-driven multidrug efflux pump  YP_001954521  decreased coverage  0.00131825  n/a    Bifidobacterium longum DJO10A  Bacteria 
 
 
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BLD_0626  CDS  NC_010816  714462  714860  399  hypothetical protein  YP_001954570  decreased coverage  4.56204e-05  n/a    Bifidobacterium longum DJO10A  Bacteria 
 
 
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BLD_0629  CDS  NC_010816  718456  719820  1365  Xanthine/uracil permease  YP_001954573  decreased coverage  0.0040794  n/a    Bifidobacterium longum DJO10A  Bacteria 
 
 
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BLD_0720  CDS  NC_010816  824407  825105  699  phosphoglycerate mutase family protein  YP_001954664  decreased coverage  0.00316433  n/a    Bifidobacterium longum DJO10A  Bacteria 
 
 
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BLD_0721  CDS  NC_010816  825735  827435  1701  phosphotransacetylase  YP_001954665  decreased coverage  0.000504699  n/a    Bifidobacterium longum DJO10A  Bacteria 
 
 
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BLD_0761  CDS  NC_010816  874333  874632  300  hypothetical protein  YP_001954705  decreased coverage  1.33988e-05  n/a    Bifidobacterium longum DJO10A  Bacteria 
 
 
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BLD_0767  CDS  NC_010816  881325  882269  945  hemolysin III-like membrane protein  YP_001954711  decreased coverage  0.00245971  n/a    Bifidobacterium longum DJO10A  Bacteria 
 
 
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BLD_0771  CDS  NC_010816  885058  885627  570  hypothetical protein  YP_001954715  decreased coverage  0.00137244  n/a    Bifidobacterium longum DJO10A  Bacteria 
 
 
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BLD_0875  CDS  NC_010816  1003120  1003983  864  amino acid ABC transporter/signal transduction systems periplasmic protein  YP_001954819  decreased coverage  0.00496425  n/a    Bifidobacterium longum DJO10A  Bacteria 
 
 
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BLD_0912  CDS  NC_010816  1049198  1050922  1725  hypothetical protein  YP_001954856  decreased coverage  0.000369378  n/a    Bifidobacterium longum DJO10A  Bacteria 
 
 
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BLD_1094  CDS  NC_010816  1284579  1284899  321  arsenate reductase  YP_001955038  decreased coverage  4.86648e-08  n/a    Bifidobacterium longum DJO10A  Bacteria 
 
 
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BLD_1135  CDS  NC_010816  1323166  1324401  1236  phage lysin-like lysozyme M1  YP_001955079  decreased coverage  0.00113309  n/a    Bifidobacterium longum DJO10A  Bacteria 
 
 
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BLD_1152  CDS  NC_010816  1339475  1339810  336  hypothetical protein  YP_001955095  decreased coverage  0.00182719  n/a    Bifidobacterium longum DJO10A  Bacteria 
 
 
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BLD_1153  CDS  NC_010816  1339807  1340259  453  hypothetical protein  YP_001955096  decreased coverage  0.00248916  n/a    Bifidobacterium longum DJO10A  Bacteria 
 
 
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BLD_1154  CDS  NC_010816  1340271  1340585  315  hypothetical protein  YP_001955097  decreased coverage  0.00130878  n/a    Bifidobacterium longum DJO10A  Bacteria 
 
 
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BLD_1303  CDS  NC_010816  1504080  1504880  801  MalG-type ABC sugar transport system permease component  YP_001955246  decreased coverage  0.00414048  n/a    Bifidobacterium longum DJO10A  Bacteria 
 
 
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BLD_1304  CDS  NC_010816  1504896  1505900  1005  MalF-type ABC sugar transport systems permease component  YP_001955247  decreased coverage  0.00913134  n/a    Bifidobacterium longum DJO10A  Bacteria 
 
 
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BLD_1309  CDS  NC_010816  1510453  1511805  1353  Xanthine/uracil permease  YP_001955252  decreased coverage  0.00197381  n/a    Bifidobacterium longum DJO10A  Bacteria 
 
 
-
 
BLD_1313  CDS  NC_010816  1514453  1516333  1881  molecular chaperone DnaK  YP_001955256  decreased coverage  0.0013795  n/a    Bifidobacterium longum DJO10A  Bacteria 
 
 
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BLD_1317  CDS  NC_010816  1519965  1520681  717  MalG-type ABC sugar transport system permease component  YP_001955260  decreased coverage  3.54335e-05  n/a    Bifidobacterium longum DJO10A  Bacteria 
 
 
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BLD_1331  CDS  NC_010816  1538532  1540058  1527  sucrose phosphorylase  YP_001955274  decreased coverage  0.00201506  n/a    Bifidobacterium longum DJO10A  Bacteria 
 
 
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BLD_1543  CDS  NC_010816  1833662  1835257  1596  beta-xylosidase  YP_001955486  decreased coverage  0.000200892  n/a    Bifidobacterium longum DJO10A  Bacteria 
 
 
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BLD_1622  CDS  NC_010816  1938965  1939858  894  transcription antiterminator  YP_001955565  decreased coverage  0.000761547  n/a    Bifidobacterium longum DJO10A  Bacteria 
 
 
-
 
BLD_1683  CDS  NC_010816  2023967  2025493  1527  amino acid transporter  YP_001955626  decreased coverage  0.000204712  n/a    Bifidobacterium longum DJO10A  Bacteria 
 
 
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BLD_1707  CDS  NC_010816  2054152  2054793  642  50S ribosomal protein L3  YP_001955650  decreased coverage  0.00287886  n/a    Bifidobacterium longum DJO10A  Bacteria 
 
 
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BLD_1708  CDS  NC_010816  2054800  2055456  657  50S ribosomal protein L4  YP_001955651  decreased coverage  0.00274066  n/a    Bifidobacterium longum DJO10A  Bacteria 
 
 
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BLD_1726  CDS  NC_010816  2062937  2063389  453  50S ribosomal protein L15  YP_001955669  decreased coverage  2.05453e-06  n/a    Bifidobacterium longum DJO10A  Bacteria 
 
 
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BLD_1727  CDS  NC_010816  2063662  2064999  1338  preprotein translocase subunit SecY  YP_001955670  decreased coverage  4.16171e-05  n/a    Bifidobacterium longum DJO10A  Bacteria 
 
 
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BLD_1762  CDS  NC_010816  2105459  2106775  1317  MalE-type ABC sugar transport system periplasmic component  YP_001955705  decreased coverage  7.40157e-05  n/a    Bifidobacterium longum DJO10A  Bacteria 
 
 
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BLD_1796  CDS  NC_010816  2145129  2145773  645  hypothetical protein  YP_001955739  decreased coverage  0.00393074  n/a    Bifidobacterium longum DJO10A  Bacteria 
 
 
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BLD_1811  CDS  NC_010816  2159102  2159890  789  hypothetical protein  YP_001955754  decreased coverage  0.00116023  n/a    Bifidobacterium longum DJO10A  Bacteria 
 
 
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BLD_1812  CDS  NC_010816  2159905  2160015  111  hypothetical protein  YP_001955755  decreased coverage  0.000143979  n/a    Bifidobacterium longum DJO10A  Bacteria 
 
 
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BLD_1828  CDS  NC_010816  2180068  2180475  408  hypothetical protein  YP_001955771  decreased coverage  0.00465235  n/a    Bifidobacterium longum DJO10A  Bacteria 
 
 
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BLD_1829  CDS  NC_010816  2180599  2181435  837  chromosome partitioning ATPase  YP_001955772  decreased coverage  0.00367094  n/a    Bifidobacterium longum DJO10A  Bacteria 
 
 
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BLD_1836  CDS  NC_010816  2185785  2186798  1014  UDP-glucose 4-epimerase  YP_001955779  decreased coverage  1.02298e-05  n/a    Bifidobacterium longum DJO10A  Bacteria 
 
 
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BLD_1859  CDS  NC_010816  2214722  2215879  1158  xylose ABC transporter periplasmic protein  YP_001955802  decreased coverage  8.87855e-06  n/a    Bifidobacterium longum DJO10A  Bacteria 
 
 
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BLD_1870  CDS  NC_010816  2224038  2224271  234  putative permease  YP_001955813  decreased coverage  9.8587e-05  n/a    Bifidobacterium longum DJO10A  Bacteria 
 
 
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BLD_1893  CDS  NC_010816  2248428  2249516  1089  branched-chain amino acid ABC transporter permease  YP_001955836  decreased coverage  0.00991478  n/a    Bifidobacterium longum DJO10A  Bacteria 
 
 
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BLD_1946  CDS  NC_010816  2319776  2320309  534  MarR family transcriptional regulator  YP_001955889  decreased coverage  0.00612369  n/a    Bifidobacterium longum DJO10A  Bacteria 
 
 
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BLD_t0006  tRNA  NC_010816  535025  535100  76  tRNA-Gly    decreased coverage  8.76762e-07  n/a    Bifidobacterium longum DJO10A  Bacteria 
 
 
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BLD_t0007  tRNA  NC_010816  535125  535195  71  tRNA-Cys    decreased coverage  8.92535e-07  n/a    Bifidobacterium longum DJO10A  Bacteria 
 
 
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BLD_t0008  tRNA  NC_010816  535237  535311  75  tRNA-Val    decreased coverage  9.57098e-07  n/a    Bifidobacterium longum DJO10A  Bacteria 
 
 
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BLD_t0019  tRNA  NC_010816  849150  849223  74  tRNA-Leu    decreased coverage  2.51522e-07  n/a    Bifidobacterium longum DJO10A  Bacteria 
 
 
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BLD_t0026  tRNA  NC_010816  1289379  1289454  76  tRNA-Val    decreased coverage  9.91337e-07  n/a    Bifidobacterium longum DJO10A  Bacteria 
 
 
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BLD_t0027  tRNA  NC_010816  1289503  1289574  72  tRNA-Val    decreased coverage  7.30329e-07  n/a    Bifidobacterium longum DJO10A  Bacteria 
 
 
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BLD_t0052  tRNA  NC_010816  2126113  2126189  77  tRNA-Pro    decreased coverage  1.62603e-06  n/a    Bifidobacterium longum DJO10A  Bacteria 
 
 
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