81 decreased-coverage genes were found for selected organism/s



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Locus tag

Gene type

Replicon accession

From

To

Strand

Gene Length

Product

Protein accession

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Organism name

Kingdom

Coverage Plot

PanDaTox homologs

Experimental validation
Acid345_0144  CDS  NC_008009  153075  154229  1155  queuine tRNA-ribosyltransferase  YP_589223  normal  0.0518824  decreased coverage  0.000581764  Candidatus Koribacter versatilis Ellin345  Bacteria 
 
 
-
 
Acid345_0147  CDS  NC_008009  156415  157629  1215  protein translocase subunit secF  YP_589226  decreased coverage  9.249e-06  hitchhiker  0.00252765  Candidatus Koribacter versatilis Ellin345  Bacteria 
 
 
-
 
Acid345_0148  CDS  NC_008009  157760  158494  735  TonB-like protein  YP_589227  decreased coverage  9.78892e-06  hitchhiker  0.00708657  Candidatus Koribacter versatilis Ellin345  Bacteria 
 
 
-
 
Acid345_0178  CDS  NC_008009  189110  190375  1266  hypothetical protein  YP_589257  decreased coverage  0.000132954  normal  0.337224  Candidatus Koribacter versatilis Ellin345  Bacteria 
 
 
-
 
Acid345_0423  CDS  NC_008009  490961  494449  3489  hypothetical protein  YP_589502  decreased coverage  0.000804756  normal  0.0470711  Candidatus Koribacter versatilis Ellin345  Bacteria 
 
 
-
 
Acid345_0512  CDS  NC_008009  631168  631749  582  potassium-transporting ATPase, C subunit  YP_589591  decreased coverage  0.00499959  normal  Candidatus Koribacter versatilis Ellin345  Bacteria 
 
 
-
 
Acid345_0560  CDS  NC_008009  688548  689606  1059  TonB-like protein  YP_589639  decreased coverage  3.37767e-07  normal  0.21091  Candidatus Koribacter versatilis Ellin345  Bacteria 
 
 
-
 
Acid345_0561  CDS  NC_008009  689686  690114  429  50S ribosomal protein L13  YP_589640  decreased coverage  2.24516e-08  normal  0.196899  Candidatus Koribacter versatilis Ellin345  Bacteria 
 
 
-
 
Acid345_0562  CDS  NC_008009  690144  690539  396  SSU ribosomal protein S9P  YP_589641  decreased coverage  1.34066e-08  normal  0.199008  Candidatus Koribacter versatilis Ellin345  Bacteria 
 
 
-
 
Acid345_0662  CDS  NC_008009  815839  817341  1503  parallel beta-helix repeat-containing protein  YP_589741  decreased coverage  0.000522571  normal  0.950756  Candidatus Koribacter versatilis Ellin345  Bacteria 
 
 
-
 
Acid345_0895  CDS  NC_008009  1115049  1116065  1017  NAD-dependent epimerase/dehydratase  YP_589972  decreased coverage  8.13821e-05  normal  Candidatus Koribacter versatilis Ellin345  Bacteria 
 
 
-
 
Acid345_0932  CDS  NC_008009  1181770  1183665  1896  hypothetical protein  YP_590009  normal  0.728516  decreased coverage  0.000145164  Candidatus Koribacter versatilis Ellin345  Bacteria 
 
 
-
 
Acid345_0933  CDS  NC_008009  1183677  1187261  3585  Cna B-type protein  YP_590010  unclonable  0.000219871  decreased coverage  0.000250734  Candidatus Koribacter versatilis Ellin345  Bacteria 
 
 
-
 
Acid345_0934  CDS  NC_008009  1187429  1188829  1401  pyridoxal-dependent decarboxylase  YP_590011  unclonable  2.18274e-07  decreased coverage  0.000132275  Candidatus Koribacter versatilis Ellin345  Bacteria 
 
 
-
 
Acid345_1078  CDS  NC_008009  1352782  1354833  2052  PgPepO oligopeptidase  YP_590155  decreased coverage  0.00182798  normal  0.0175164  Candidatus Koribacter versatilis Ellin345  Bacteria 
 
 
-
 
Acid345_1079  CDS  NC_008009  1355156  1356178  1023  oxidoreductase  YP_590156  decreased coverage  0.00272705  normal  0.0148491  Candidatus Koribacter versatilis Ellin345  Bacteria 
 
 
-
 
Acid345_1125  CDS  NC_008009  1403598  1403954  357  CopG family transcriptional regulator  YP_590202  decreased coverage  1.21555e-06  unclonable  6.92901e-06  Candidatus Koribacter versatilis Ellin345  Bacteria 
 
 
-
 
Acid345_1126  CDS  NC_008009  1403951  1404235  285  addiction module toxin, RelE/StbE  YP_590203  decreased coverage  1.06734e-06  unclonable  6.65595e-06  Candidatus Koribacter versatilis Ellin345  Bacteria 
 
 
-
 
Acid345_1134  CDS  NC_008009  1412577  1413620  1044  putative transcriptional regulator  YP_590211  decreased coverage  3.16036e-07  hitchhiker  0.00966616  Candidatus Koribacter versatilis Ellin345  Bacteria 
 
 
-
 
Acid345_1221  CDS  NC_008009  1507121  1507495  375  30S ribosomal protein S12  YP_590297  decreased coverage  7.86754e-06  hitchhiker  0.00402882  Candidatus Koribacter versatilis Ellin345  Bacteria 
 
 
-
 
Acid345_1222  CDS  NC_008009  1507510  1507983  474  30S ribosomal protein S7  YP_590298  decreased coverage  1.88964e-06  hitchhiker  0.00370144  Candidatus Koribacter versatilis Ellin345  Bacteria 
 
 
-
 
Acid345_1248  CDS  NC_008009  1524632  1525384  753  methionine aminopeptidase, type I  YP_590324  decreased coverage  4.62112e-06  normal  0.100012  Candidatus Koribacter versatilis Ellin345  Bacteria 
 
 
-
 
Acid345_1249  CDS  NC_008009  1525477  1525695  219  translation initiation factor IF-1  YP_590325  decreased coverage  1.8307e-05  normal  0.0943393  Candidatus Koribacter versatilis Ellin345  Bacteria 
 
 
-
 
Acid345_1302  CDS  NC_008009  1579650  1580498  849  hypothetical protein  YP_590378  decreased coverage  0.00400766  normal  Candidatus Koribacter versatilis Ellin345  Bacteria 
 
 
-
 
Acid345_1395  CDS  NC_008009  1695763  1696629  867  ABC peptide transporter, inner membrane subunit  YP_590471  normal  0.064701  decreased coverage  0.00784209  Candidatus Koribacter versatilis Ellin345  Bacteria 
 
 
-
 
Acid345_1399  CDS  NC_008009  1698005  1698508  504  hypothetical protein  YP_590475  decreased coverage  0.00112999  normal  0.0211435  Candidatus Koribacter versatilis Ellin345  Bacteria 
 
 
-
 
Acid345_1559  CDS  NC_008009  1907332  1908603  1272  ATP-dependent protease ATP-binding subunit ClpX  YP_590635  normal  0.173836  decreased coverage  0.00342669  Candidatus Koribacter versatilis Ellin345  Bacteria 
 
 
-
 
Acid345_1560  CDS  NC_008009  1908820  1909404  585  ATP-dependent Clp protease proteolytic subunit ClpP  YP_590636  normal  0.173495  decreased coverage  0.00284408  Candidatus Koribacter versatilis Ellin345  Bacteria 
 
 
-
 
Acid345_1561  CDS  NC_008009  1909495  1910808  1314  trigger factor  YP_590637  normal  0.528079  decreased coverage  0.00345443  Candidatus Koribacter versatilis Ellin345  Bacteria 
 
 
-
 
Acid345_1568  CDS  NC_008009  1917069  1918346  1278  peptidase M16-like  YP_590644  hitchhiker  1.1969e-05  decreased coverage  0.00224891  Candidatus Koribacter versatilis Ellin345  Bacteria 
 
 
-
 
Acid345_1633  CDS  NC_008009  1981254  1983158  1905  hypothetical protein  YP_590709  decreased coverage  0.00578112  normal  0.776269  Candidatus Koribacter versatilis Ellin345  Bacteria 
 
 
-
 
Acid345_2002  CDS  NC_008009  2398731  2399924  1194  hypothetical protein  YP_591077  decreased coverage  0.00963424  normal  Candidatus Koribacter versatilis Ellin345  Bacteria 
 
 
-
 
Acid345_2223  CDS  NC_008009  2642756  2643250  495  single-strand binding protein  YP_591298  decreased coverage  3.51539e-07  normal  0.108037  Candidatus Koribacter versatilis Ellin345  Bacteria 
 
 
-
 
Acid345_2261  CDS  NC_008009  2681596  2683011  1416  hypothetical protein  YP_591336  decreased coverage  1.57771e-06  normal  Candidatus Koribacter versatilis Ellin345  Bacteria 
 
 
-
 
Acid345_3005  CDS  NC_008009  3559710  3563000  3291  TPR repeat-containing protein  YP_592080  normal  decreased coverage  0.000321187  Candidatus Koribacter versatilis Ellin345  Bacteria 
 
 
-
 
Acid345_3006  CDS  NC_008009  3563085  3565823  2739  CoA-binding protein  YP_592081  normal  decreased coverage  0.000257819  Candidatus Koribacter versatilis Ellin345  Bacteria 
 
 
-
 
Acid345_3007  CDS  NC_008009  3565977  3566918  942  metallophosphoesterase  YP_592082  normal  decreased coverage  0.000150726  Candidatus Koribacter versatilis Ellin345  Bacteria 
 
 
-
 
Acid345_3008  CDS  NC_008009  3566923  3567948  1026  von Willebrand factor, type A  YP_592083  normal  0.780877  decreased coverage  0.000171728  Candidatus Koribacter versatilis Ellin345  Bacteria 
 
 
-
 
Acid345_3009  CDS  NC_008009  3568027  3568797  771  cyclase/dehydrase  YP_592084  normal  decreased coverage  0.000149284  Candidatus Koribacter versatilis Ellin345  Bacteria 
 
 
-
 
Acid345_3010  CDS  NC_008009  3568817  3570013  1197  alcohol dehydrogenase GroES-like protein  YP_592085  normal  0.609837  decreased coverage  0.000185041  Candidatus Koribacter versatilis Ellin345  Bacteria 
 
 
-
 
Acid345_3011  CDS  NC_008009  3570182  3571234  1053  phosphoribosylformylglycinamidine cyclo-ligase  YP_592086  normal  decreased coverage  0.000165502  Candidatus Koribacter versatilis Ellin345  Bacteria 
 
 
-
 
Acid345_3217  CDS  NC_008009  3806555  3807115  561  hypothetical protein  YP_592292  decreased coverage  0.00849386  normal  0.108692  Candidatus Koribacter versatilis Ellin345  Bacteria 
 
 
-
 
Acid345_3231  CDS  NC_008009  3827303  3828211  909  hypothetical protein  YP_592306  normal  0.771885  decreased coverage  0.007242  Candidatus Koribacter versatilis Ellin345  Bacteria 
 
 
-
 
Acid345_3461  CDS  NC_008009  4082675  4085434  2760  ABC efflux pump, inner membrane subunit  YP_592536  hitchhiker  0.00119144  decreased coverage  0.00373054  Candidatus Koribacter versatilis Ellin345  Bacteria 
 
 
-
 
Acid345_3463  CDS  NC_008009  4085936  4086307  372  ArsR family transcriptional regulator  YP_592538  decreased coverage  1.13736e-05  hitchhiker  0.007671  Candidatus Koribacter versatilis Ellin345  Bacteria 
 
 
-
 
Acid345_3480  CDS  NC_008009  4105366  4106271  906  diguanylate cyclase with PAS/PAC sensor  YP_592555  decreased coverage  0.00742863  normal  0.98733  Candidatus Koribacter versatilis Ellin345  Bacteria 
 
 
-
 
Acid345_3543  CDS  NC_008009  4190727  4192286  1560  thiol oxidoreductase-like  YP_592618  decreased coverage  0.00122263  normal  Candidatus Koribacter versatilis Ellin345  Bacteria 
 
 
-
 
Acid345_3597  CDS  NC_008009  4254575  4255039  465  hypothetical protein  YP_592672  normal  0.50522  decreased coverage  0.00580211  Candidatus Koribacter versatilis Ellin345  Bacteria 
 
 
-
 
Acid345_3599  CDS  NC_008009  4255581  4257665  2085  hypothetical protein  YP_592674  normal  0.161985  decreased coverage  0.00880556  Candidatus Koribacter versatilis Ellin345  Bacteria 
 
 
-
 
Acid345_3718  CDS  NC_008009  4396104  4396664  561  hypothetical protein  YP_592793  decreased coverage  0.00204077  normal  Candidatus Koribacter versatilis Ellin345  Bacteria 
 
 
-
 
Acid345_3901  CDS  NC_008009  4614863  4615741  879  hypothetical protein  YP_592975  decreased coverage  1.12288e-07  normal  0.0367904  Candidatus Koribacter versatilis Ellin345  Bacteria 
 
 
-
 
Acid345_3902  CDS  NC_008009  4616603  4617676  1074  histone deacetylase superfamily protein  YP_592976  decreased coverage  2.51706e-07  normal  0.03889  Candidatus Koribacter versatilis Ellin345  Bacteria 
 
 
-
 
Acid345_3904  CDS  NC_008009  4618545  4620260  1716  Sel1  YP_592978  normal  0.0190521  decreased coverage  0.00495215  Candidatus Koribacter versatilis Ellin345  Bacteria 
 
 
-
 
Acid345_3905  CDS  NC_008009  4620304  4621659  1356  aminotransferase  YP_592979  normal  0.57399  decreased coverage  0.00444917  Candidatus Koribacter versatilis Ellin345  Bacteria 
 
 
-
 
Acid345_3906  CDS  NC_008009  4621656  4621892  237  hypothetical protein  YP_592980  normal  0.210687  decreased coverage  0.00332285  Candidatus Koribacter versatilis Ellin345  Bacteria 
 
 
-
 
Acid345_3907  CDS  NC_008009  4621969  4623192  1224  hypothetical protein  YP_592981  normal  0.0452365  decreased coverage  0.00418649  Candidatus Koribacter versatilis Ellin345  Bacteria 
 
 
-
 
Acid345_4161  CDS  NC_008009  4927572  4928624  1053  N-acetyl-gamma-glutamyl-phosphate reductase  YP_593235  decreased coverage  0.0034393  normal  0.156047  Candidatus Koribacter versatilis Ellin345  Bacteria 
 
 
-
 
Acid345_4162  CDS  NC_008009  4928625  4929071  447  ArgR family transcriptional regulator  YP_593236  decreased coverage  0.00922797  normal  0.12838  Candidatus Koribacter versatilis Ellin345  Bacteria 
 
 
-
 
Acid345_4201  CDS  NC_008009  4978628  4979269  642  HNH endonuclease  YP_593275  normal  decreased coverage  0.00342669  Candidatus Koribacter versatilis Ellin345  Bacteria 
 
 
-
 
Acid345_4202  CDS  NC_008009  4979276  4979917  642  phosphoribosyltransferase  YP_593276  normal  decreased coverage  0.0030984  Candidatus Koribacter versatilis Ellin345  Bacteria 
 
 
-
 
Acid345_4218  CDS  NC_008009  4995623  4997227  1605  NusA antitermination factor  YP_593292  decreased coverage  1.84689e-05  normal  0.152678  Candidatus Koribacter versatilis Ellin345  Bacteria 
 
 
-
 
Acid345_4250  CDS  NC_008009  5043799  5044566  768  hypothetical protein  YP_593324  decreased coverage  0.00701403  normal  0.803434  Candidatus Koribacter versatilis Ellin345  Bacteria 
 
 
-
 
Acid345_4334  CDS  NC_008009  5142394  5143932  1539  F0F1 ATP synthase subunit alpha  YP_593408  decreased coverage  0.00117083  normal  0.611425  Candidatus Koribacter versatilis Ellin345  Bacteria 
 
 
-
 
Acid345_4349  CDS  NC_008009  5159019  5159573  555  hypothetical protein  YP_593423  decreased coverage  0.00411477  normal  0.348874  Candidatus Koribacter versatilis Ellin345  Bacteria 
 
 
-
 
Acid345_4540  CDS  NC_008009  5383833  5384912  1080  ribose-phosphate pyrophosphokinase  YP_593614  decreased coverage  2.1567e-06  normal  0.35999  Candidatus Koribacter versatilis Ellin345  Bacteria 
 
 
-
 
Acid345_4588  CDS  NC_008009  5435918  5436304  387  hypothetical protein  YP_593662  decreased coverage  0.000137158  normal  0.950092  Candidatus Koribacter versatilis Ellin345  Bacteria 
 
 
-
 
Acid345_4619  CDS  NC_008009  5472519  5473235  717  hypothetical protein  YP_593693  decreased coverage  0.00487202  normal  0.448349  Candidatus Koribacter versatilis Ellin345  Bacteria 
 
 
-
 
Acid345_4677  CDS  NC_008009  5539879  5540259  381  50S ribosomal protein L7/L12  YP_593751  normal  0.0969346  decreased coverage  0.00273455  Candidatus Koribacter versatilis Ellin345  Bacteria 
 
 
-
 
Acid345_4678  CDS  NC_008009  5540649  5541197  549  50S ribosomal protein L10  YP_593752  hitchhiker  0.000989378  decreased coverage  0.00291158  Candidatus Koribacter versatilis Ellin345  Bacteria 
 
 
-
 
Acid345_4679  CDS  NC_008009  5541221  5541928  708  50S ribosomal protein L1  YP_593753  hitchhiker  0.000682303  decreased coverage  0.0030741  Candidatus Koribacter versatilis Ellin345  Bacteria 
 
 
-
 
Acid345_4680  CDS  NC_008009  5542053  5542484  432  50S ribosomal protein L11  YP_593754  hitchhiker  0.00022611  decreased coverage  0.00273455  Candidatus Koribacter versatilis Ellin345  Bacteria 
 
 
-
 
Acid345_4681  CDS  NC_008009  5542603  5543202  600  transcription antitermination protein nusG  YP_593755  decreased coverage  0.000131174  hitchhiker  0.00867825  Candidatus Koribacter versatilis Ellin345  Bacteria 
 
 
-
 
Acid345_4683  CDS  NC_008009  5543610  5543762  153  50S ribosomal protein L33  YP_593757  decreased coverage  2.76978e-05  hitchhiker  0.00813484  Candidatus Koribacter versatilis Ellin345  Bacteria 
 
 
-
 
Acid345_4684  CDS  NC_008009  5543902  5545089  1188  elongation factor Tu  YP_593758  decreased coverage  1.25263e-05  normal  0.0270964  Candidatus Koribacter versatilis Ellin345  Bacteria 
 
 
-
 
Acid345_4765  CDS  NC_008009  5630296  5632932  2637  ATPase AAA-2  YP_593838  decreased coverage  0.000533628  normal  0.0145469  Candidatus Koribacter versatilis Ellin345  Bacteria 
 
 
-
 
Acid345_4766  CDS  NC_008009  5633060  5633551  492  heat shock protein Hsp20  YP_593839  decreased coverage  4.08851e-05  hitchhiker  0.00874264  Candidatus Koribacter versatilis Ellin345  Bacteria 
 
 
-
 
Acid345_4771  CDS  NC_008009  5636380  5636847  468  hypothetical protein  YP_593844  normal  0.0767998  decreased coverage  0.00264943  Candidatus Koribacter versatilis Ellin345  Bacteria 
 
 
-
 
Acid345_4772  CDS  NC_008009  5637050  5639647  2598  DNA gyrase subunit A  YP_593845  normal  0.427862  decreased coverage  0.00451801  Candidatus Koribacter versatilis Ellin345  Bacteria 
 
 
-
 
Acid345_R0007  tRNA  NC_008009  782919  782994  76  tRNA-Lys    decreased coverage  6.8563e-07  normal  0.189185  Candidatus Koribacter versatilis Ellin345  Bacteria 
 
 
-
 
Acid345_R0035  tRNA  NC_008009  4616518  4616592  75  tRNA-His    decreased coverage  2.46336e-09  normal  0.0312371  Candidatus Koribacter versatilis Ellin345  Bacteria 
 
 
-
 
Acid345_R0054  tRNA  NC_008009  5545970  5546057  88  tRNA-Tyr    hitchhiker  0.000280744  decreased coverage  0.00224891  Candidatus Koribacter versatilis Ellin345  Bacteria 
 
 
-
 
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