163 decreased-coverage genes were found for selected organism/s



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Locus tag

Gene type

Replicon accession

From

To

Strand

Gene Length

Product

Protein accession

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Organism name

Kingdom

Coverage Plot

PanDaTox homologs

Experimental validation
Tery_0097  CDS  NC_008312  132007  133308  1302  amino acid permease-associated region  YP_720074  decreased coverage  0.00415721  normal  Trichodesmium erythraeum IMS101  Bacteria 
 
 
-
 
Tery_0113    NC_008312  153324  154171  848      decreased coverage  0.0029807  normal  Trichodesmium erythraeum IMS101  Bacteria 
 
 
-
 
Tery_0131  CDS  NC_008312  188512  188796  285  hypothetical protein  YP_720099  normal  0.818485  decreased coverage  0.00619864  Trichodesmium erythraeum IMS101  Bacteria 
 
 
-
 
Tery_0178  CDS  NC_008312  264281  265960  1680  GUN4-like  YP_720143  decreased coverage  0.000497221  normal  0.66578  Trichodesmium erythraeum IMS101  Bacteria 
 
 
-
 
Tery_0181  CDS  NC_008312  268161  269534  1374  cytochrome P450  YP_720145  decreased coverage  6.8031e-05  normal  0.336498  Trichodesmium erythraeum IMS101  Bacteria 
 
 
-
 
Tery_0183  CDS  NC_008312  271328  272389  1062  photosystem q(b) protein  YP_720147  decreased coverage  9.80824e-06  normal  0.269801  Trichodesmium erythraeum IMS101  Bacteria 
 
 
-
 
Tery_0223  CDS  NC_008312  344301  345062  762  hypothetical protein  YP_720184  decreased coverage  2.61911e-06  normal  Trichodesmium erythraeum IMS101  Bacteria 
 
 
-
 
Tery_0244  CDS  NC_008312  382366  383226  861  hypothetical protein  YP_720203  normal  0.55818  decreased coverage  0.00311699  Trichodesmium erythraeum IMS101  Bacteria 
 
 
-
 
Tery_0245  CDS  NC_008312  383619  384155  537  hypothetical protein  YP_720204  normal  0.566903  decreased coverage  0.00246834  Trichodesmium erythraeum IMS101  Bacteria 
 
 
-
 
Tery_0246  CDS  NC_008312  384785  385255  471  hypothetical protein  YP_720205  normal  0.314293  decreased coverage  0.00240623  Trichodesmium erythraeum IMS101  Bacteria 
 
 
-
 
Tery_0247  CDS  NC_008312  385456  387327  1872  serine/threonine protein kinase  YP_720206  normal  0.171781  decreased coverage  0.00306578  Trichodesmium erythraeum IMS101  Bacteria 
 
 
-
 
Tery_0284  CDS  NC_008312  438503  439606  1104  glycine oxidase ThiO  YP_720238  normal  decreased coverage  0.00610276  Trichodesmium erythraeum IMS101  Bacteria 
 
 
-
 
Tery_0305  CDS  NC_008312  470844  471815  972  hypothetical protein  YP_720256  decreased coverage  5.16328e-05  normal  Trichodesmium erythraeum IMS101  Bacteria 
 
 
-
 
Tery_0324  CDS  NC_008312  499291  499899  609  30S ribosomal protein S4  YP_720272  decreased coverage  2.26614e-07  normal  Trichodesmium erythraeum IMS101  Bacteria 
 
 
-
 
Tery_0337  CDS  NC_008312  516434  517675  1242  hypothetical protein  YP_720284  decreased coverage  0.00896127  normal  Trichodesmium erythraeum IMS101  Bacteria 
 
 
-
 
Tery_0425  CDS  NC_008312  669642  675599  5958  protein splicing site  YP_720358  normal  decreased coverage  0.00902882  Trichodesmium erythraeum IMS101  Bacteria 
 
 
-
 
Tery_0426  CDS  NC_008312  675849  677618  1770  RNA-directed DNA polymerase  YP_720359  normal  0.350523  decreased coverage  0.00346836  Trichodesmium erythraeum IMS101  Bacteria 
 
 
-
 
Tery_0536  CDS  NC_008312  849080  850216  1137  hypothetical protein  YP_720461  normal  0.0623826  decreased coverage  0.00686318  Trichodesmium erythraeum IMS101  Bacteria 
 
 
-
 
Tery_0537  CDS  NC_008312  850299  852104  1806  hypothetical protein  YP_720462  normal  0.148715  decreased coverage  0.00787083  Trichodesmium erythraeum IMS101  Bacteria 
 
 
-
 
Tery_0538  CDS  NC_008312  852585  853763  1179  permease YjgP/YjgQ  YP_720463  normal  0.914546  decreased coverage  0.0076294  Trichodesmium erythraeum IMS101  Bacteria 
 
 
-
 
Tery_0618  CDS  NC_008312  1002049  1004481  2433  exonuclease RecJ  YP_720534  normal  0.195781  decreased coverage  0.00316903  Trichodesmium erythraeum IMS101  Bacteria 
 
 
-
 
Tery_0626  CDS  NC_008312  1020821  1027000  6180  tetratricopeptide TPR_2  YP_720541  normal  decreased coverage  0.00762464  Trichodesmium erythraeum IMS101  Bacteria 
 
 
-
 
Tery_0627  CDS  NC_008312  1027704  1029122  1419  ResB-like  YP_720542  normal  0.305133  decreased coverage  0.00211831  Trichodesmium erythraeum IMS101  Bacteria 
 
 
-
 
Tery_0628  CDS  NC_008312  1029386  1030117  732  cytochrome c biogenesis protein, transmembrane region  YP_720543  normal  0.517911  decreased coverage  0.00174403  Trichodesmium erythraeum IMS101  Bacteria 
 
 
-
 
Tery_0629  CDS  NC_008312  1030632  1030886  255  hypothetical protein  YP_720544  normal  0.519249  decreased coverage  0.00156197  Trichodesmium erythraeum IMS101  Bacteria 
 
 
-
 
Tery_0630  CDS  NC_008312  1030880  1031239  360  transcriptional modulator of MazE/toxin, MazF  YP_720545  normal  0.647439  decreased coverage  0.00158876  Trichodesmium erythraeum IMS101  Bacteria 
 
 
-
 
Tery_0631  CDS  NC_008312  1031502  1032680  1179  glycosyltransferase-like protein  YP_720546  normal  decreased coverage  0.00219158  Trichodesmium erythraeum IMS101  Bacteria 
 
 
-
 
Tery_0637  CDS  NC_008312  1039586  1040161  576  rhomboid-like protein  YP_720551  normal  decreased coverage  0.00193081  Trichodesmium erythraeum IMS101  Bacteria 
 
 
-
 
Tery_0638  CDS  NC_008312  1041012  1041449  438  hypothetical protein  YP_720552  normal  decreased coverage  0.00168546  Trichodesmium erythraeum IMS101  Bacteria 
 
 
-
 
Tery_0639  CDS  NC_008312  1041863  1042810  948  WD repeat-containing protein  YP_720553  normal  0.221679  decreased coverage  0.0018351  Trichodesmium erythraeum IMS101  Bacteria 
 
 
-
 
Tery_0640  CDS  NC_008312  1042907  1043191  285  hypothetical protein  YP_720554  normal  0.232797  decreased coverage  0.00152322  Trichodesmium erythraeum IMS101  Bacteria 
 
 
-
 
Tery_0641  CDS  NC_008312  1044189  1045154  966  ribonuclease Z  YP_720555  normal  0.56652  decreased coverage  0.00172895  Trichodesmium erythraeum IMS101  Bacteria 
 
 
-
 
Tery_0742  CDS  NC_008312  1199263  1200468  1206  coenzyme F420 hydrogenase/dehydrogenase beta subunit-like  YP_720646  decreased coverage  0.00706315  normal  Trichodesmium erythraeum IMS101  Bacteria 
 
 
-
 
Tery_1040  CDS  NC_008312  1629979  1630473  495  hypothetical protein  YP_720885  decreased coverage  0.00475702  normal  0.146874  Trichodesmium erythraeum IMS101  Bacteria 
 
 
-
 
Tery_1097  CDS  NC_008312  1725763  1726743  981  glycosyl transferase family protein  YP_720935  decreased coverage  0.000713189  normal  0.938252  Trichodesmium erythraeum IMS101  Bacteria 
 
 
-
 
Tery_1107    NC_008312  1742583  1742906  324      decreased coverage  1.48876e-08  normal  0.213167  Trichodesmium erythraeum IMS101  Bacteria 
 
 
-
 
Tery_1117  CDS  NC_008312  1758520  1759998  1479  hypothetical protein  YP_720952  decreased coverage  0.00643446  normal  0.0767157  Trichodesmium erythraeum IMS101  Bacteria 
 
 
-
 
Tery_1126  CDS  NC_008312  1772579  1773457  879  binding-protein-dependent transport systems inner membrane component  YP_720961  normal  0.19595  decreased coverage  0.000508122  Trichodesmium erythraeum IMS101  Bacteria 
 
 
-
 
Tery_1127  CDS  NC_008312  1774989  1775900  912  prolyl 4-hydroxylase, alpha subunit  YP_720962  normal  0.328998  decreased coverage  0.000557231  Trichodesmium erythraeum IMS101  Bacteria 
 
 
-
 
Tery_1128  CDS  NC_008312  1782421  1783974  1554  bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase  YP_720963  normal  decreased coverage  0.00061636  Trichodesmium erythraeum IMS101  Bacteria 
 
 
-
 
Tery_1155  CDS  NC_008312  1813694  1814017  324  hypothetical protein  YP_720990  decreased coverage  0.0011956  hitchhiker  0.0048484  Trichodesmium erythraeum IMS101  Bacteria 
 
 
-
 
Tery_1160  CDS  NC_008312  1820154  1820813  660  translation elongation factor Ts (EF-Ts)  YP_720994  normal  decreased coverage  0.000237926  Trichodesmium erythraeum IMS101  Bacteria 
 
 
-
 
Tery_1161  CDS  NC_008312  1820973  1821791  819  30S ribosomal protein S2  YP_720995  normal  decreased coverage  0.000246943  Trichodesmium erythraeum IMS101  Bacteria 
 
 
-
 
Tery_1162  CDS  NC_008312  1822341  1822685  345  hypothetical protein  YP_720996  normal  decreased coverage  0.000199565  Trichodesmium erythraeum IMS101  Bacteria 
 
 
-
 
Tery_1163  CDS  NC_008312  1823465  1824130  666  hypothetical protein  YP_720997  normal  decreased coverage  0.000227012  Trichodesmium erythraeum IMS101  Bacteria 
 
 
-
 
Tery_1164  CDS  NC_008312  1824405  1824599  195  hypothetical protein  YP_720998  normal  decreased coverage  0.000201442  Trichodesmium erythraeum IMS101  Bacteria 
 
 
-
 
Tery_1165  CDS  NC_008312  1824692  1825762  1071  hypothetical protein  YP_720999  normal  decreased coverage  0.000258705  Trichodesmium erythraeum IMS101  Bacteria 
 
 
-
 
Tery_1166  CDS  NC_008312  1826159  1827190  1032  coproporphyrinogen III oxidase  YP_721000  normal  decreased coverage  0.000235619  Trichodesmium erythraeum IMS101  Bacteria 
 
 
-
 
Tery_1167  CDS  NC_008312  1827259  1827642  384  anti-sigma-factor antagonist  YP_721001  normal  decreased coverage  0.000216807  Trichodesmium erythraeum IMS101  Bacteria 
 
 
-
 
Tery_1168  CDS  NC_008312  1828262  1828981  720  Thf1-like protein  YP_721002  normal  0.73706  decreased coverage  0.000261237  Trichodesmium erythraeum IMS101  Bacteria 
 
 
-
 
Tery_1169  CDS  NC_008312  1829938  1830477  540  hypothetical protein  YP_721003  normal  0.595792  decreased coverage  0.000273567  Trichodesmium erythraeum IMS101  Bacteria 
 
 
-
 
Tery_1248    NC_008312  1931878  1932315  438      normal  decreased coverage  0.00780778  Trichodesmium erythraeum IMS101  Bacteria 
 
 
-
 
Tery_1249    NC_008312  1933242  1933526  285      normal  0.445857  decreased coverage  0.0077484  Trichodesmium erythraeum IMS101  Bacteria 
 
 
-
 
Tery_1250  CDS  NC_008312  1934396  1935022  627  heat shock protein DnaJ-like  YP_721068  normal  0.262225  decreased coverage  0.00851688  Trichodesmium erythraeum IMS101  Bacteria 
 
 
-
 
Tery_1261    NC_008312  1948200  1948550  351      normal  0.318304  decreased coverage  0.00851688  Trichodesmium erythraeum IMS101  Bacteria 
 
 
-
 
Tery_1262    NC_008312  1948649  1949146  498      normal  0.280656  decreased coverage  0.00871888  Trichodesmium erythraeum IMS101  Bacteria 
 
 
-
 
Tery_1263  CDS  NC_008312  1949797  1950114  318  hypothetical protein  YP_721075  normal  0.540878  decreased coverage  0.00858549  Trichodesmium erythraeum IMS101  Bacteria 
 
 
-
 
Tery_1264  CDS  NC_008312  1950101  1950238  138  hypothetical protein  YP_721076  normal  0.501945  decreased coverage  0.008383  Trichodesmium erythraeum IMS101  Bacteria 
 
 
-
 
Tery_1294  CDS  NC_008312  1975139  1976026  888  hypothetical protein  YP_721098  decreased coverage  3.10204e-05  normal  0.331391  Trichodesmium erythraeum IMS101  Bacteria 
 
 
-
 
Tery_1347    NC_008312  2055535  2055735  201      normal  decreased coverage  0.00210048  Trichodesmium erythraeum IMS101  Bacteria 
 
 
-
 
Tery_1366  CDS  NC_008312  2095438  2097009  1572  amine oxidase  YP_721151  decreased coverage  0.00171854  normal  Trichodesmium erythraeum IMS101  Bacteria 
 
 
-
 
Tery_1470  CDS  NC_008312  2228505  2230655  2151  multi-sensor signal transduction histidine kinase  YP_721233  normal  decreased coverage  0.00246834  Trichodesmium erythraeum IMS101  Bacteria 
 
 
-
 
Tery_1493  CDS  NC_008312  2270596  2270847  252  hypothetical protein  YP_721253  decreased coverage  0.00105107  normal  0.264684  Trichodesmium erythraeum IMS101  Bacteria 
 
 
-
 
Tery_1518  CDS  NC_008312  2306692  2308485  1794  TPR repeat-containing protein  YP_721275  normal  decreased coverage  0.00971618  Trichodesmium erythraeum IMS101  Bacteria 
 
 
-
 
Tery_1535  CDS  NC_008312  2329093  2329341  249  hypothetical protein  YP_721289  decreased coverage  0.00581338  normal  0.0581996  Trichodesmium erythraeum IMS101  Bacteria 
 
 
-
 
Tery_1602  CDS  NC_008312  2448737  2449576  840  hypothetical protein  YP_721354  decreased coverage  0.00301963  normal  Trichodesmium erythraeum IMS101  Bacteria 
 
 
-
 
Tery_1785  CDS  NC_008312  2726086  2727363  1278  hypothetical protein  YP_721517  decreased coverage  7.70102e-06  normal  Trichodesmium erythraeum IMS101  Bacteria 
 
 
-
 
Tery_1812  CDS  NC_008312  2763776  2764633  858  Sec-independent protein translocase TatC  YP_721542  decreased coverage  0.00710402  hitchhiker  0.000512966  Trichodesmium erythraeum IMS101  Bacteria 
 
 
-
 
Tery_1856  CDS  NC_008312  2840104  2841153  1050  mannose-1-phosphate guanylyltransferase (GDP)  YP_721585  decreased coverage  0.00721789  normal  Trichodesmium erythraeum IMS101  Bacteria 
 
 
-
 
Tery_1905  CDS  NC_008312  2939721  2941274  1554  DNA polymerase III subunit alpha  YP_721633  decreased coverage  0.000727256  normal  Trichodesmium erythraeum IMS101  Bacteria 
 
 
-
 
Tery_1913  CDS  NC_008312  2961697  2962806  1110  gamma-glutamyl kinase  YP_721641  decreased coverage  0.000486066  normal  0.185793  Trichodesmium erythraeum IMS101  Bacteria 
 
 
-
 
Tery_1922  CDS  NC_008312  2977812  2978084  273  hypothetical protein  YP_721650  normal  0.121054  decreased coverage  0.00956812  Trichodesmium erythraeum IMS101  Bacteria 
 
 
-
 
Tery_1956  CDS  NC_008312  3031977  3033209  1233  RNA polymerase, sigma 28 subunit  YP_721682  normal  0.672319  decreased coverage  0.00257504  Trichodesmium erythraeum IMS101  Bacteria 
 
 
-
 
Tery_1957  CDS  NC_008312  3033921  3034799  879  lipoyl synthase  YP_721683  normal  0.0540392  decreased coverage  0.00259733  Trichodesmium erythraeum IMS101  Bacteria 
 
 
-
 
Tery_2014  CDS  NC_008312  3142781  3143446  666  hypothetical protein  YP_721735  decreased coverage  0.00063998  normal  0.0613304  Trichodesmium erythraeum IMS101  Bacteria 
 
 
-
 
Tery_2127  CDS  NC_008312  3323299  3323946  648  phosphoglycerate mutase  YP_721834  decreased coverage  0.00711318  normal  Trichodesmium erythraeum IMS101  Bacteria 
 
 
-
 
Tery_2324  CDS  NC_008312  3598479  3598706  228  gas vesicle synthesis protein GvpA  YP_722019  decreased coverage  1.12837e-08  hitchhiker  0.000242369  Trichodesmium erythraeum IMS101  Bacteria 
 
 
-
 
Tery_2325  CDS  NC_008312  3599249  3599467  219  gas vesicle synthesis protein GvpA  YP_722020  decreased coverage  7.40835e-09  unclonable  2.03995e-05  Trichodesmium erythraeum IMS101  Bacteria 
 
 
-
 
Tery_2536  CDS  NC_008312  3914490  3914915  426  SSU ribosomal protein S16P  YP_722211  decreased coverage  5.71366e-08  decreased coverage  0.00236598  Trichodesmium erythraeum IMS101  Bacteria 
 
 
-
 
Tery_2588  CDS  NC_008312  3989526  3990599  1074  hypothetical protein  YP_722258  decreased coverage  0.00416674  normal  0.988623  Trichodesmium erythraeum IMS101  Bacteria 
 
 
-
 
Tery_2689  CDS  NC_008312  4159429  4161774  2346  hypothetical protein  YP_722351  normal  0.36496  decreased coverage  0.00230732  Trichodesmium erythraeum IMS101  Bacteria 
 
 
-
 
Tery_2690  CDS  NC_008312  4161767  4162180  414  hypothetical protein  YP_722352  normal  0.211093  decreased coverage  0.00168546  Trichodesmium erythraeum IMS101  Bacteria 
 
 
-
 
Tery_2691  CDS  NC_008312  4162778  4164304  1527  polysaccharide export protein  YP_722353  normal  0.113552  decreased coverage  0.00268462  Trichodesmium erythraeum IMS101  Bacteria 
 
 
-
 
Tery_2692  CDS  NC_008312  4164431  4165150  720  hypothetical protein  YP_722354  normal  0.570878  decreased coverage  0.00219158  Trichodesmium erythraeum IMS101  Bacteria 
 
 
-
 
Tery_2693  CDS  NC_008312  4165263  4166156  894  eight transmembrane protein EpsH  YP_722355  normal  0.609355  decreased coverage  0.00255345  Trichodesmium erythraeum IMS101  Bacteria 
 
 
-
 
Tery_2695  CDS  NC_008312  4169525  4170607  1083  recombinase A  YP_722357  normal  0.611822  decreased coverage  0.00221105  Trichodesmium erythraeum IMS101  Bacteria 
 
 
-
 
Tery_2696  CDS  NC_008312  4170843  4171718  876  alpha/beta hydrolase fold  YP_722358  normal  0.498963  decreased coverage  0.00208278  Trichodesmium erythraeum IMS101  Bacteria 
 
 
-
 
Tery_2718    NC_008312  4210709  4211614  906      normal  0.46912  decreased coverage  0.00167087  Trichodesmium erythraeum IMS101  Bacteria 
 
 
-
 
Tery_2719    NC_008312  4212036  4212803  768      normal  decreased coverage  0.00165674  Trichodesmium erythraeum IMS101  Bacteria 
 
 
-
 
Tery_2720  CDS  NC_008312  4213178  4214185  1008  hypothetical protein  YP_722379  normal  decreased coverage  0.00180423  Trichodesmium erythraeum IMS101  Bacteria 
 
 
-
 
Tery_2759  CDS  NC_008312  4271969  4273429  1461  hypothetical protein  YP_722415  decreased coverage  1.24104e-05  normal  0.929544  Trichodesmium erythraeum IMS101  Bacteria 
 
 
-
 
Tery_2777  CDS  NC_008312  4307061  4311179  4119  glycerophosphoryl diester phosphodiesterase  YP_722432  normal  0.878054  decreased coverage  0.00575711  Trichodesmium erythraeum IMS101  Bacteria 
 
 
-
 
Tery_2778    NC_008312  4311663  4311920  258      normal  0.883695  decreased coverage  0.00189875  Trichodesmium erythraeum IMS101  Bacteria 
 
 
-
 
Tery_2779  CDS  NC_008312  4313520  4314593  1074  Ion transport protein  YP_722433  normal  decreased coverage  0.00211831  Trichodesmium erythraeum IMS101  Bacteria 
 
 
-
 
Tery_2780  CDS  NC_008312  4314812  4315546  735  ABC transporter related  YP_722434  normal  0.410215  decreased coverage  0.00175924  Trichodesmium erythraeum IMS101  Bacteria 
 
 
-
 
Tery_2781  CDS  NC_008312  4315773  4316561  789  cobalt ABC transporter, inner membrane subunit CbiQ  YP_722435  normal  0.115944  decreased coverage  0.00193081  Trichodesmium erythraeum IMS101  Bacteria 
 
 
-
 
Tery_2782  CDS  NC_008312  4316788  4317432  645  cobalt transport protein CbiM  YP_722436  normal  0.104857  decreased coverage  0.00186647  Trichodesmium erythraeum IMS101  Bacteria 
 
 
-
 
Tery_2783  CDS  NC_008312  4317526  4318032  507  hypothetical protein  YP_722437  normal  0.596957  decreased coverage  0.00175924  Trichodesmium erythraeum IMS101  Bacteria 
 
 
-
 
Tery_2784  CDS  NC_008312  4318432  4319469  1038  transposase  YP_722438  normal  0.108617  decreased coverage  0.0022307  Trichodesmium erythraeum IMS101  Bacteria 
 
 
-
 
Tery_2812  CDS  NC_008312  4365954  4366712  759  hypothetical protein  YP_722461  decreased coverage  0.00715038  normal  0.857337  Trichodesmium erythraeum IMS101  Bacteria 
 
 
-
 
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