56 decreased-coverage genes were found for selected organism/s



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Locus tag

Gene type

Replicon accession

From

To

Strand

Gene Length

Product

Protein accession

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Organism name

Kingdom

Coverage Plot

PanDaTox homologs

Experimental validation
OEOE_0010  CDS  NC_008528  11696  12136  441  ribosomal protein S6  YP_809664  decreased coverage  4.37004e-07  n/a    Oenococcus oeni PSU-1  Bacteria 
 
 
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OEOE_0011  CDS  NC_008528  12145  12702  558  single-stranded DNA-binding protein  YP_809666  decreased coverage  9.15981e-06  n/a    Oenococcus oeni PSU-1  Bacteria 
 
 
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OEOE_0041  CDS  NC_008528  39160  40575  1416  major facilitator superfamily permease  YP_809710  decreased coverage  0.000141077  n/a    Oenococcus oeni PSU-1  Bacteria 
 
 
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OEOE_0097  CDS  NC_008528  88042  89523  1482  major facilitator superfamily permease  YP_809760  decreased coverage  0.000342925  n/a    Oenococcus oeni PSU-1  Bacteria 
 
 
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OEOE_0266  CDS  NC_008528  255453  256322  870  3-hydroxyisobutyrate dehydrogenase or related beta-hydroxyacid dehydrogenase  YP_809913  decreased coverage  0.00389354  n/a    Oenococcus oeni PSU-1  Bacteria 
 
 
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OEOE_0343  CDS  NC_008528  333774  335075  1302  cellobiose-specific PTS system IIC component  YP_809981  decreased coverage  0.000855206  n/a    Oenococcus oeni PSU-1  Bacteria 
 
 
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OEOE_0388  CDS  NC_008528  378039  379490  1452  amino acid transporter  YP_810018  decreased coverage  0.000257428  n/a    Oenococcus oeni PSU-1  Bacteria 
 
 
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OEOE_0447  CDS  NC_008528  432100  432450  351  hypothetical protein  YP_810069  decreased coverage  1.28689e-05  n/a    Oenococcus oeni PSU-1  Bacteria 
 
 
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OEOE_0456  CDS  NC_008528  443593  443907  315  hypothetical protein  YP_810078  decreased coverage  0.00302471  n/a    Oenococcus oeni PSU-1  Bacteria 
 
 
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OEOE_0465  CDS  NC_008528  454482  455297  816  mannose-specific PTS system component IIC  YP_810087  decreased coverage  4.13396e-05  n/a    Oenococcus oeni PSU-1  Bacteria 
 
 
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OEOE_0481  CDS  NC_008528  469407  470090  684  hypothetical protein  YP_810100  decreased coverage  0.00758654  n/a    Oenococcus oeni PSU-1  Bacteria 
 
 
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OEOE_0534  CDS  NC_008528  513918  514172  255  hypothetical protein  YP_810147  decreased coverage  1.0181e-07  n/a    Oenococcus oeni PSU-1  Bacteria 
 
 
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OEOE_0535  CDS  NC_008528  514365  515336  972  guanosine 5'-monophosphate oxidoreductase  YP_810148  decreased coverage  8.22537e-06  n/a    Oenococcus oeni PSU-1  Bacteria 
 
 
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OEOE_0570  CDS  NC_008528  547424  548020  597  ATP-dependent Clp protease proteolytic subunit ClpP  YP_810179  decreased coverage  0.000198349  n/a    Oenococcus oeni PSU-1  Bacteria 
 
 
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OEOE_0631  CDS  NC_008528  593191  594009  819  spermidine/putrescine ABC transporter permease protein  YP_810238  decreased coverage  0.000147089  n/a    Oenococcus oeni PSU-1  Bacteria 
 
 
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OEOE_0672  CDS  NC_008528  634208  635341  1134  D-alanyl-alanine synthetase A  YP_810274  decreased coverage  0.00380934  n/a    Oenococcus oeni PSU-1  Bacteria 
 
 
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OEOE_0739  CDS  NC_008528  691287  691691  405  2'-5' RNA ligase  YP_810337  decreased coverage  0.00260297  n/a    Oenococcus oeni PSU-1  Bacteria 
 
 
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OEOE_0779  CDS  NC_008528  728459  729007  549  5-formyltetrahydrofolate cyclo-ligase  YP_810371  decreased coverage  0.0084989  n/a    Oenococcus oeni PSU-1  Bacteria 
 
 
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OEOE_0797  CDS  NC_008528  746567  747484  918  hypothetical protein  YP_810388  decreased coverage  1.08107e-05  n/a    Oenococcus oeni PSU-1  Bacteria 
 
 
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OEOE_0798  CDS  NC_008528  747549  747839  291  SSU ribosomal protein S16P  YP_810389  decreased coverage  2.68891e-07  n/a    Oenococcus oeni PSU-1  Bacteria 
 
 
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OEOE_0806  CDS  NC_008528  752739  753296  558  peptide deformylase  YP_810396  decreased coverage  1.82352e-05  n/a    Oenococcus oeni PSU-1  Bacteria 
 
 
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OEOE_0840  CDS  NC_008528  785709  787376  1668  ABC-type oligopeptide transport system, periplasmic component  YP_810426  decreased coverage  0.00138321  n/a    Oenococcus oeni PSU-1  Bacteria 
 
 
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OEOE_0912  CDS  NC_008528  854958  856091  1134  hypothetical protein  YP_810494  decreased coverage  4.11962e-05  n/a    Oenococcus oeni PSU-1  Bacteria 
 
 
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OEOE_0917  CDS  NC_008528  859016  860059  1044  phenylalanyl-tRNA synthetase subunit alpha  YP_810499  decreased coverage  0.000145048  n/a    Oenococcus oeni PSU-1  Bacteria 
 
 
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OEOE_0956  CDS  NC_008528  894165  894680  516  hypothetical protein  YP_810532  decreased coverage  5.17883e-05  n/a    Oenococcus oeni PSU-1  Bacteria 
 
 
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OEOE_0957  CDS  NC_008528  894801  895103  303  50S ribosomal protein L21P  YP_810533  decreased coverage  2.39901e-06  n/a    Oenococcus oeni PSU-1  Bacteria 
 
 
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OEOE_0958  CDS  NC_008528  895115  895435  321  50S ribosomal protein L27  YP_810534  decreased coverage  2.05292e-05  n/a    Oenococcus oeni PSU-1  Bacteria 
 
 
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OEOE_0959  CDS  NC_008528  895487  896575  1089  aminopeptidase P  YP_810535  decreased coverage  0.00122435  n/a    Oenococcus oeni PSU-1  Bacteria 
 
 
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OEOE_0982  CDS  NC_008528  912799  914511  1713  prolyl-tRNA synthetase  YP_810556  decreased coverage  0.00893244  n/a    Oenococcus oeni PSU-1  Bacteria 
 
 
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OEOE_0989  CDS  NC_008528  921454  922371  918  GTPase  YP_810563  decreased coverage  0.00032345  n/a    Oenococcus oeni PSU-1  Bacteria 
 
 
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OEOE_0990  CDS  NC_008528  922371  923147  777  DNA replication and repair protein RecO  YP_810564  decreased coverage  0.000715553  n/a    Oenococcus oeni PSU-1  Bacteria 
 
 
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OEOE_1028  CDS  NC_008528  963147  964067  921  inorganic pyrophosphatase/exopolyphosphatase  YP_810602  decreased coverage  0.000101218  n/a    Oenococcus oeni PSU-1  Bacteria 
 
 
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OEOE_1029  CDS  NC_008528  964165  964329  165  50S ribosomal protein L33  YP_810603  decreased coverage  7.70423e-06  n/a    Oenococcus oeni PSU-1  Bacteria 
 
 
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OEOE_1030  CDS  NC_008528  964329  964598  270  SSU ribosomal protein S14P  YP_810604  decreased coverage  1.26459e-05  n/a    Oenococcus oeni PSU-1  Bacteria 
 
 
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OEOE_1090  CDS  NC_008528  1020493  1021032  540  hypothetical protein  YP_810655  decreased coverage  0.000187701  n/a    Oenococcus oeni PSU-1  Bacteria 
 
 
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OEOE_1118  CDS  NC_008528  1049957  1051201  1245  arginine deiminase  YP_810682  decreased coverage  0.00592031  n/a    Oenococcus oeni PSU-1  Bacteria 
 
 
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OEOE_1147  CDS  NC_008528  1082510  1083826  1317  UDP-N-acetylmuramoylalanine--D-glutamate ligase  YP_810708  decreased coverage  0.00829243  n/a    Oenococcus oeni PSU-1  Bacteria 
 
 
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OEOE_1148  CDS  NC_008528  1083814  1084791  978  phospho-N-acetylmuramoyl-pentapeptide- transferase  YP_810709  decreased coverage  0.000693481  n/a    Oenococcus oeni PSU-1  Bacteria 
 
 
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OEOE_1298  CDS  NC_008528  1206806  1207141  336  hypothetical protein  YP_810835  decreased coverage  0.000339252  n/a    Oenococcus oeni PSU-1  Bacteria 
 
 
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OEOE_1299  CDS  NC_008528  1207204  1208616  1413  NAD-dependent aldehyde dehydrogenase  YP_810836  decreased coverage  0.00410405  n/a    Oenococcus oeni PSU-1  Bacteria 
 
 
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OEOE_1310  CDS  NC_008528  1219149  1219745  597  molecular chaperone GrpE (heat shock protein)  YP_810847  decreased coverage  7.65244e-06  n/a    Oenococcus oeni PSU-1  Bacteria 
 
 
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OEOE_1311  CDS  NC_008528  1219837  1220367  531  acetyltransferase  YP_810848  decreased coverage  0.000122305  n/a    Oenococcus oeni PSU-1  Bacteria 
 
 
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OEOE_1314  CDS  NC_008528  1222481  1224589  2109  elongation factor G  YP_810851  decreased coverage  0.00915512  n/a    Oenococcus oeni PSU-1  Bacteria 
 
 
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OEOE_1315  CDS  NC_008528  1224606  1225076  471  30S ribosomal protein S7  YP_810852  decreased coverage  3.043e-07  n/a    Oenococcus oeni PSU-1  Bacteria 
 
 
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OEOE_1324  CDS  NC_008528  1232678  1232812  135  hypothetical protein  YP_810859  decreased coverage  3.21367e-07  n/a    Oenococcus oeni PSU-1  Bacteria 
 
 
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OEOE_1325  CDS  NC_008528  1232872  1233795  924  malate dehydrogenase (NAD)  YP_810860  decreased coverage  4.16686e-06  n/a    Oenococcus oeni PSU-1  Bacteria 
 
 
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OEOE_1417  CDS  NC_008528  1330398  1330991  594  50S ribosomal protein L10  YP_810943  decreased coverage  1.3127e-06  n/a    Oenococcus oeni PSU-1  Bacteria 
 
 
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OEOE_1418  CDS  NC_008528  1331184  1331876  693  50S ribosomal protein L1P  YP_810944  decreased coverage  0.000214693  n/a    Oenococcus oeni PSU-1  Bacteria 
 
 
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OEOE_1563  CDS  NC_008528  1480142  1481086  945  malate permease  YP_811083  decreased coverage  0.00482398  n/a    Oenococcus oeni PSU-1  Bacteria 
 
 
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OEOE_1624  CDS  NC_008528  1542158  1542400  243  hypothetical protein  YP_811140  decreased coverage  1.81375e-06  n/a    Oenococcus oeni PSU-1  Bacteria 
 
 
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OEOE_1643  CDS  NC_008528  1561086  1562651  1566  superfamily II DNA/RNA helicase  YP_811158  decreased coverage  0.000605464  n/a    Oenococcus oeni PSU-1  Bacteria 
 
 
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OEOE_1644  CDS  NC_008528  1562767  1564152  1386  UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase  YP_811159  decreased coverage  0.000174573  n/a    Oenococcus oeni PSU-1  Bacteria 
 
 
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OEOE_1647  CDS  NC_008528  1566389  1568428  2040  cation transport ATPase  YP_811162  decreased coverage  0.00748953  n/a    Oenococcus oeni PSU-1  Bacteria 
 
 
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OEOE_1669  CDS  NC_008528  1588164  1588925  762  sugar phosphate isomerase/epimerase  YP_811183  decreased coverage  2.40726e-06  n/a    Oenococcus oeni PSU-1  Bacteria 
 
 
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OEOE_1682  CDS  NC_008528  1600809  1602185  1377  D-xylose proton-symporter  YP_811196  decreased coverage  9.61132e-05  n/a    Oenococcus oeni PSU-1  Bacteria 
 
 
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OEOE_1784  CDS  NC_008528  1703986  1704228  243  50S ribosomal protein L31P  YP_811288  decreased coverage  5.81965e-05  n/a    Oenococcus oeni PSU-1  Bacteria 
 
 
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