54 decreased-coverage genes were found for selected organism/s



Page 1 of 1    << first  < prev  1  next >  last >>   


Locus tag

Gene type

Replicon accession

From

To

Strand

Gene Length

Product

Protein accession

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Organism name

Kingdom

Coverage Plot

PanDaTox homologs

Experimental validation
LEUM_0127  CDS  NC_008531  107893  108531  639  hemolysin III-like protein  YP_817651  decreased coverage  7.07276e-05  n/a    Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293  Bacteria 
 
 
-
 
LEUM_0130  CDS  NC_008531  111678  113024  1347  xylose isomerase  YP_817654  decreased coverage  0.00829449  n/a    Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293  Bacteria 
 
 
-
 
LEUM_0197  CDS  NC_008531  173605  174228  624  50S ribosomal protein L4  YP_817701  decreased coverage  0.00203095  n/a    Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293  Bacteria 
 
 
-
 
LEUM_0212  CDS  NC_008531  180493  180999  507  30S ribosomal protein S5  YP_817716  decreased coverage  3.16e-05  n/a    Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293  Bacteria 
 
 
-
 
LEUM_0213  CDS  NC_008531  181011  181193  183  50S ribosomal protein L30  YP_817717  decreased coverage  3.48111e-06  n/a    Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293  Bacteria 
 
 
-
 
LEUM_0231  CDS  NC_008531  193655  194050  396  SSU ribosomal protein S9P  YP_817735  decreased coverage  1.92076e-05  n/a    Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293  Bacteria 
 
 
-
 
LEUM_0325  CDS  NC_008531  279934  280329  396  cell wall-associated hydrolase  YP_817822  decreased coverage  0.0094799  n/a    Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293  Bacteria 
 
 
-
 
LEUM_0340  CDS  NC_008531  296803  297270  468  UspA family nucleotide-binding protein  YP_817837  decreased coverage  2.38748e-05  n/a    Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293  Bacteria 
 
 
-
 
LEUM_0384  CDS  NC_008531  336262  337740  1479  glycosidase  YP_817879  decreased coverage  0.00983965  n/a    Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293  Bacteria 
 
 
-
 
LEUM_0450  CDS  NC_008531  411732  411998  267  50S ribosomal protein L31 type B  YP_817939  decreased coverage  0.000490006  n/a    Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293  Bacteria 
 
 
-
 
LEUM_0471  CDS  NC_008531  431182  432147  966  putative glucose uptake permease  YP_817960  decreased coverage  0.000523457  n/a    Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293  Bacteria 
 
 
-
 
LEUM_0491  CDS  NC_008531  451111  452040  930  alpha/beta fold family hydrolase  YP_817980  decreased coverage  0.000476721  n/a    Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293  Bacteria 
 
 
-
 
LEUM_0492  CDS  NC_008531  452099  452503  405  Fe2+/Zn2+ uptake regulation protein  YP_817981  decreased coverage  2.19354e-05  n/a    Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293  Bacteria 
 
 
-
 
LEUM_0523  CDS  NC_008531  488720  489949  1230  PepS aminopeptidase  YP_818011  decreased coverage  0.00231455  n/a    Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293  Bacteria 
 
 
-
 
LEUM_0524  CDS  NC_008531  490094  490831  738  Lyzozyme M1 (1,4-beta-N-acetylmuramidase)  YP_818012  decreased coverage  0.00922637  n/a    Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293  Bacteria 
 
 
-
 
LEUM_0616  CDS  NC_008531  584604  585194  591  Holliday junction DNA helicase RuvA  YP_818103  decreased coverage  0.00649233  n/a    Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293  Bacteria 
 
 
-
 
LEUM_0626  CDS  NC_008531  593317  594240  924  TPR repeat-containing protein  YP_818112  decreased coverage  0.00376856  n/a    Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293  Bacteria 
 
 
-
 
LEUM_0648  CDS  NC_008531  616035  616205  171  hypothetical protein  YP_818133  decreased coverage  4.4165e-06  n/a    Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293  Bacteria 
 
 
-
 
LEUM_0667  CDS  NC_008531  635800  637092  1293  diaminopimelate decarboxylase  YP_818150  decreased coverage  0.00422384  n/a    Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293  Bacteria 
 
 
-
 
LEUM_0685  CDS  NC_008531  653103  653882  780  undecaprenyl pyrophosphate synthetase  YP_818168  decreased coverage  0.000229491  n/a    Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293  Bacteria 
 
 
-
 
LEUM_0690  CDS  NC_008531  662195  662602  408  hypothetical protein  YP_818173  decreased coverage  2.36422e-05  n/a    Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293  Bacteria 
 
 
-
 
LEUM_0698  CDS  NC_008531  670926  671816  891  lysophospholipase L1 related esterase  YP_818181  decreased coverage  0.000348792  n/a    Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293  Bacteria 
 
 
-
 
LEUM_0714  CDS  NC_008531  687200  688195  996  sortase (surface protein transpeptidase)  YP_818197  decreased coverage  0.0029312  n/a    Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293  Bacteria 
 
 
-
 
LEUM_0789  CDS  NC_008531  766944  767480  537  5-formyltetrahydrofolate cyclo-ligase  YP_818271  decreased coverage  4.30272e-05  n/a    Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293  Bacteria 
 
 
-
 
LEUM_0803  CDS  NC_008531  780990  781880  891  ABC-type metal ion transport system, periplasmic component/surface adhesin  YP_818285  decreased coverage  0.000167329  n/a    Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293  Bacteria 
 
 
-
 
LEUM_0816  CDS  NC_008531  797693  798124  432  UspA family nucleotide-binding protein  YP_818297  decreased coverage  0.000142801  n/a    Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293  Bacteria 
 
 
-
 
LEUM_0820  CDS  NC_008531  805567  806472  906  Co/Zn/Cd cation transporter  YP_818301  decreased coverage  0.00173784  n/a    Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293  Bacteria 
 
 
-
 
LEUM_0822  CDS  NC_008531  807833  808867  1035  5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase  YP_818303  decreased coverage  0.000926899  n/a    Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293  Bacteria 
 
 
-
 
LEUM_0833  CDS  NC_008531  820211  820801  591  4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis protein  YP_818314  decreased coverage  5.24755e-05  n/a    Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293  Bacteria 
 
 
-
 
LEUM_0838  CDS  NC_008531  825439  826353  915  LysR family transcriptional regulator  YP_818319  decreased coverage  0.00258172  n/a    Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293  Bacteria 
 
 
-
 
LEUM_0969  CDS  NC_008531  969471  970043  573  putative threonine efflux protein  YP_818447  decreased coverage  0.00708139  n/a    Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293  Bacteria 
 
 
-
 
LEUM_0989  CDS  NC_008531  987028  988041  1014  allophanate hydrolase subunit 2  YP_818466  decreased coverage  0.00574869  n/a    Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293  Bacteria 
 
 
-
 
LEUM_1010  CDS  NC_008531  1009626  1009868  243  transposase  YP_818483  decreased coverage  0.00127389  n/a    Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293  Bacteria 
 
 
-
 
LEUM_1091  CDS  NC_008531  1095274  1096149  876  alpha/beta hydrolase superfamily protein  YP_818564  decreased coverage  0.000481324  n/a    Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293  Bacteria 
 
 
-
 
LEUM_1121    NC_008531  1118917  1120167  1251      decreased coverage  0.00258448  n/a    Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293  Bacteria 
 
 
-
 
LEUM_1156  CDS  NC_008531  1154042  1154818  777  thiazole synthase  YP_818627  decreased coverage  0.00109697  n/a    Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293  Bacteria 
 
 
-
 
LEUM_1168  CDS  NC_008531  1164413  1165237  825  shikimate dehydrogenase  YP_818639  decreased coverage  0.00990538  n/a    Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293  Bacteria 
 
 
-
 
LEUM_1220  CDS  NC_008531  1217446  1217793  348  hypothetical protein  YP_818691  decreased coverage  0.000105075  n/a    Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293  Bacteria 
 
 
-
 
LEUM_1241  CDS  NC_008531  1235069  1236367  1299  DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)  YP_818712  decreased coverage  0.00483871  n/a    Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293  Bacteria 
 
 
-
 
LEUM_1272  CDS  NC_008531  1260512  1261006  495  phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB  YP_818742  decreased coverage  0.00454576  n/a    Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293  Bacteria 
 
 
-
 
LEUM_1326  CDS  NC_008531  1316026  1316325  300  50S ribosomal protein L21P  YP_818794  decreased coverage  1.07304e-05  n/a    Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293  Bacteria 
 
 
-
 
LEUM_1343  CDS  NC_008531  1327911  1328699  789  fructose-1 6-bisphosphatase  YP_818809  decreased coverage  0.000165715  n/a    Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293  Bacteria 
 
 
-
 
LEUM_1361  CDS  NC_008531  1343680  1343829  150  50S ribosomal protein L33  YP_818827  decreased coverage  3.86724e-06  n/a    Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293  Bacteria 
 
 
-
 
LEUM_1392  CDS  NC_008531  1377715  1378434  720  glycerol uptake facilitator related permease (major Intrinsic protein family)  YP_818858  decreased coverage  0.000178707  n/a    Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293  Bacteria 
 
 
-
 
LEUM_1522  CDS  NC_008531  1519937  1521232  1296  trigger factor  YP_818987  decreased coverage  0.00548401  n/a    Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293  Bacteria 
 
 
-
 
LEUM_1659  CDS  NC_008531  1651402  1651656  255  hypothetical protein  YP_819124  decreased coverage  6.94515e-06  n/a    Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293  Bacteria 
 
 
-
 
LEUM_1687  CDS  NC_008531  1663352  1663687  336  XRE family transcriptional regulator  YP_819152  decreased coverage  0.00137686  n/a    Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293  Bacteria 
 
 
-
 
LEUM_1775  CDS  NC_008531  1746044  1747060  1017  putative DNA-binding/iron metalloprotein/AP endonuclease  YP_819235  decreased coverage  0.00448291  n/a    Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293  Bacteria 
 
 
-
 
LEUM_1892  CDS  NC_008531  1866589  1867206  618  transcriptional regulator  YP_819339  decreased coverage  0.00216331  n/a    Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293  Bacteria 
 
 
-
 
LEUM_1926  CDS  NC_008531  1893959  1894843  885  hypothetical protein  YP_819370  decreased coverage  0.00318499  n/a    Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293  Bacteria 
 
 
-
 
LEUM_1941  CDS  NC_008531  1912005  1913117  1113  alanine racemase  YP_819385  decreased coverage  0.0017462  n/a    Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293  Bacteria 
 
 
-
 
LEUM_1970  CDS  NC_008531  1943837  1944133  297  ribosomal protein S6  YP_819414  decreased coverage  0.00222496  n/a    Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293  Bacteria 
 
 
-
 
LEUM_2054  CDS  NC_008531  2020877  2021644  768  hypothetical protein  YP_819497  decreased coverage  0.000229491  n/a    Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293  Bacteria 
 
 
-
 
LEUM_2065  CDS  NC_008531  2029053  2029187  135  50S ribosomal protein L34  YP_819507  decreased coverage  2.17746e-05  n/a    Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293  Bacteria 
 
 
-
 
Page 1 of 1    << first  < prev  1  next >  last >>