64 decreased-coverage genes were found for selected organism/s



Page 1 of 1    << first  < prev  1  next >  last >>   


Locus tag

Gene type

Replicon accession

From

To

Strand

Gene Length

Product

Protein accession

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Organism name

Kingdom

Coverage Plot

PanDaTox homologs

Experimental validation
Noca_0307  CDS  NC_008699  326594  327949  1356  CD9/CD37/CD63 antigen  YP_921539  decreased coverage  0.00186482  n/a    Nocardioides sp. JS614  Bacteria 
 
 
-
 
Noca_0309  CDS  NC_008699  329399  330673  1275  peptidase S8/S53 subtilisin kexin sedolisin  YP_921541  decreased coverage  0.00119964  n/a    Nocardioides sp. JS614  Bacteria 
 
 
-
 
Noca_0310  CDS  NC_008699  330706  332175  1470  multicopper oxidase, type 3  YP_921542  decreased coverage  0.00058954  n/a    Nocardioides sp. JS614  Bacteria 
 
 
-
 
Noca_0363  CDS  NC_008699  388395  389441  1047  septum site determining protein  YP_921593  decreased coverage  3.46854e-05  n/a    Nocardioides sp. JS614  Bacteria 
 
 
-
 
Noca_0364  CDS  NC_008699  389438  390601  1164  type II secretion system protein E  YP_921594  decreased coverage  5.91318e-05  n/a    Nocardioides sp. JS614  Bacteria 
 
 
-
 
Noca_0508  CDS  NC_008699  538338  539339  1002  AMP-dependent synthetase and ligase  YP_921737  decreased coverage  0.000453063  n/a    Nocardioides sp. JS614  Bacteria 
 
 
-
 
Noca_0509  CDS  NC_008699  539330  540292  963  O-succinylbenzoate synthase  YP_921738  decreased coverage  0.000393904  n/a    Nocardioides sp. JS614  Bacteria 
 
 
-
 
Noca_0672  CDS  NC_008699  711522  712544  1023  UDP-N-acetylenolpyruvoylglucosamine reductase  YP_921885  decreased coverage  0.00434817  n/a    Nocardioides sp. JS614  Bacteria 
 
 
-
 
Noca_0957  CDS  NC_008699  1007322  1008170  849  periplasmic binding protein  YP_922167  decreased coverage  0.00790982  n/a    Nocardioides sp. JS614  Bacteria 
 
 
-
 
Noca_1139  CDS  NC_008699  1208957  1211608  2652  diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)  YP_922342  decreased coverage  0.00209756  n/a    Nocardioides sp. JS614  Bacteria 
 
 
-
 
Noca_1478  CDS  NC_008699  1564502  1565524  1023  ATPase  YP_922679  decreased coverage  0.000160729  n/a    Nocardioides sp. JS614  Bacteria 
 
 
-
 
Noca_1479  CDS  NC_008699  1565521  1566843  1323  hypothetical protein  YP_922680  decreased coverage  0.000468509  n/a    Nocardioides sp. JS614  Bacteria 
 
 
-
 
Noca_1480  CDS  NC_008699  1566840  1567379  540  hypothetical protein  YP_922681  decreased coverage  0.000178827  n/a    Nocardioides sp. JS614  Bacteria 
 
 
-
 
Noca_1481  CDS  NC_008699  1567376  1567717  342  methylated-DNA-(protein)-cysteine S-methyltransferase  YP_922682  decreased coverage  7.77093e-05  n/a    Nocardioides sp. JS614  Bacteria 
 
 
-
 
Noca_1482  CDS  NC_008699  1567791  1568825  1035  daunorubicin resistance ABC transporter ATPase subunit  YP_922683  decreased coverage  0.000625937  n/a    Nocardioides sp. JS614  Bacteria 
 
 
-
 
Noca_1497  CDS  NC_008699  1588064  1590043  1980  hydantoinase B/oxoprolinase  YP_922698  decreased coverage  0.00877273  n/a    Nocardioides sp. JS614  Bacteria 
 
 
-
 
Noca_1703  CDS  NC_008699  1809214  1809963  750  hypothetical protein  YP_922903  decreased coverage  0.000200264  n/a    Nocardioides sp. JS614  Bacteria 
 
 
-
 
Noca_1964  CDS  NC_008699  2093994  2095016  1023  hypothetical protein  YP_923161  decreased coverage  0.000124061  n/a    Nocardioides sp. JS614  Bacteria 
 
 
-
 
Noca_2018  CDS  NC_008699  2161203  2162423  1221  phosphoribosyltransferase  YP_923215  decreased coverage  0.00136436  n/a    Nocardioides sp. JS614  Bacteria 
 
 
-
 
Noca_2019  CDS  NC_008699  2162401  2164926  2526  AMP-dependent synthetase and ligase  YP_923216  decreased coverage  0.00459182  n/a    Nocardioides sp. JS614  Bacteria 
 
 
-
 
Noca_2036  CDS  NC_008699  2179971  2180330  360  hypothetical protein  YP_923232  decreased coverage  0.00981305  n/a    Nocardioides sp. JS614  Bacteria 
 
 
-
 
Noca_2060  CDS  NC_008699  2203734  2204453  720  hypothetical protein  YP_923256  decreased coverage  0.00249342  n/a    Nocardioides sp. JS614  Bacteria 
 
 
-
 
Noca_2096  CDS  NC_008699  2239966  2240400  435  hypothetical protein  YP_923292  decreased coverage  0.00220539  n/a    Nocardioides sp. JS614  Bacteria 
 
 
-
 
Noca_2105  CDS  NC_008699  2248629  2251307  2679  pyruvate dehydrogenase subunit E1  YP_923301  decreased coverage  0.00865423  n/a    Nocardioides sp. JS614  Bacteria 
 
 
-
 
Noca_2313  CDS  NC_008699  2462625  2463575  951  luciferase family protein  YP_923505  decreased coverage  0.0072758  n/a    Nocardioides sp. JS614  Bacteria 
 
 
-
 
Noca_2506  CDS  NC_008699  2673689  2674408  720  hypothetical protein  YP_923697  decreased coverage  0.000601102  n/a    Nocardioides sp. JS614  Bacteria 
 
 
-
 
Noca_2582  CDS  NC_008699  2747285  2748277  993  hypothetical protein  YP_923773  decreased coverage  2.71962e-05  n/a    Nocardioides sp. JS614  Bacteria 
 
 
-
 
Noca_2607  CDS  NC_008699  2773337  2774536  1200  galactokinase  YP_923798  decreased coverage  0.00377614  n/a    Nocardioides sp. JS614  Bacteria 
 
 
-
 
Noca_2701  CDS  NC_008699  2870929  2872089  1161  exodeoxyribonuclease I subunit D  YP_923891  decreased coverage  6.16496e-05  n/a    Nocardioides sp. JS614  Bacteria 
 
 
-
 
Noca_2702  CDS  NC_008699  2872086  2874731  2646  putative exonuclease  YP_923892  decreased coverage  0.0098926  n/a    Nocardioides sp. JS614  Bacteria 
 
 
-
 
Noca_2866  CDS  NC_008699  3044363  3045214  852  ABC transporter related  YP_924055  decreased coverage  0.00634084  n/a    Nocardioides sp. JS614  Bacteria 
 
 
-
 
Noca_2916  CDS  NC_008699  3096613  3097569  957  DNA-binding protein  YP_924105  decreased coverage  0.000564769  n/a    Nocardioides sp. JS614  Bacteria 
 
 
-
 
Noca_3036  CDS  NC_008699  3235527  3236771  1245  FAD-dependent pyridine nucleotide-disulphide oxidoreductase  YP_924225  decreased coverage  0.00637457  n/a    Nocardioides sp. JS614  Bacteria 
 
 
-
 
Noca_3037  CDS  NC_008699  3236776  3237090  315  DsrC family protein  YP_924226  decreased coverage  0.0059771  n/a    Nocardioides sp. JS614  Bacteria 
 
 
-
 
Noca_3336  CDS  NC_008699  3540928  3542403  1476  glutamyl-tRNA synthetase  YP_924525  decreased coverage  0.00658512  n/a    Nocardioides sp. JS614  Bacteria 
 
 
-
 
Noca_3468  CDS  NC_008699  3676441  3677766  1326  GntR family transcriptional regulator  YP_924655  decreased coverage  0.00974022  n/a    Nocardioides sp. JS614  Bacteria 
 
 
-
 
Noca_3470  CDS  NC_008699  3678132  3679514  1383  FolC bifunctional protein  YP_924657  decreased coverage  0.00143451  n/a    Nocardioides sp. JS614  Bacteria 
 
 
-
 
Noca_3535  CDS  NC_008699  3745401  3746687  1287  thymidine phosphorylase  YP_924722  decreased coverage  0.00606286  n/a    Nocardioides sp. JS614  Bacteria 
 
 
-
 
Noca_3706  CDS  NC_008699  3933845  3935263  1419  diacylglycerol O-acyltransferase  YP_924893  decreased coverage  0.00641737  n/a    Nocardioides sp. JS614  Bacteria 
 
 
-
 
Noca_3768  CDS  NC_008699  3989685  3990443  759  regulatory proteins, IclR  YP_924955  decreased coverage  3.20776e-05  n/a    Nocardioides sp. JS614  Bacteria 
 
 
-
 
Noca_3823  CDS  NC_008699  4043771  4045360  1590  hypothetical protein  YP_925010  decreased coverage  0.000781142  n/a    Nocardioides sp. JS614  Bacteria 
 
 
-
 
Noca_3824  CDS  NC_008699  4045353  4047383  2031  helicase c2  YP_925011  decreased coverage  0.00296278  n/a    Nocardioides sp. JS614  Bacteria 
 
 
-
 
Noca_3832  CDS  NC_008699  4053803  4053997  195  hypothetical protein  YP_925019  decreased coverage  0.00188009  n/a    Nocardioides sp. JS614  Bacteria 
 
 
-
 
Noca_3912  CDS  NC_008699  4117257  4118252  996  integral membrane protein  YP_925097  decreased coverage  0.00542014  n/a    Nocardioides sp. JS614  Bacteria 
 
 
-
 
Noca_4156  CDS  NC_008699  4390905  4391768  864  dihydropteroate synthase  YP_925340  decreased coverage  1.30669e-05  n/a    Nocardioides sp. JS614  Bacteria 
 
 
-
 
Noca_4157  CDS  NC_008699  4391765  4392664  900  putative glucosyl-3-phosphoglycerate synthase  YP_925341  decreased coverage  0.000365831  n/a    Nocardioides sp. JS614  Bacteria 
 
 
-
 
Noca_4281  CDS  NC_008699  4523084  4524529  1446  aldehyde dehydrogenase  YP_925465  decreased coverage  0.000626871  n/a    Nocardioides sp. JS614  Bacteria 
 
 
-
 
Noca_4282  CDS  NC_008699  4524522  4525733  1212  FAD-dependent pyridine nucleotide-disulphide oxidoreductase  YP_925466  decreased coverage  0.00256886  n/a    Nocardioides sp. JS614  Bacteria 
 
 
-
 
Noca_4338  CDS  NC_008699  4586416  4587030  615  hypothetical protein  YP_925522  decreased coverage  0.00171675  n/a    Nocardioides sp. JS614  Bacteria 
 
 
-
 
Noca_4361  CDS  NC_008699  4611654  4612844  1191  chaperone protein DnaJ  YP_925545  decreased coverage  0.00606286  n/a    Nocardioides sp. JS614  Bacteria 
 
 
-
 
Noca_4375  CDS  NC_008699  4624876  4626270  1395  cytochrome P450  YP_925559  decreased coverage  0.000475823  n/a    Nocardioides sp. JS614  Bacteria 
 
 
-
 
Noca_4405  CDS  NC_008699  4661916  4662872  957  hypothetical protein  YP_925589  decreased coverage  0.00681397  n/a    Nocardioides sp. JS614  Bacteria 
 
 
-
 
Noca_4429  CDS  NC_008699  4682576  4684441  1866  acyl-CoA dehydrogenase domain-containing protein  YP_925613  decreased coverage  0.00413349  n/a    Nocardioides sp. JS614  Bacteria 
 
 
-
 
Noca_4592  CDS  NC_008699  4862291  4863862  1572  FAD dependent oxidoreductase  YP_925774  decreased coverage  0.00758706  n/a    Nocardioides sp. JS614  Bacteria 
 
 
-
 
Noca_4621  CDS  NC_008699  4898560  4899483  924  indigoidine synthase A family protein  YP_925803  decreased coverage  0.00515504  n/a    Nocardioides sp. JS614  Bacteria 
 
 
-
 
Noca_4708  CDS  NC_008697  6136  8802  2667  hypothetical protein  YP_919157  decreased coverage  0.00825046  normal  Nocardioides sp. JS614  Bacteria 
 
 
-
 
Noca_4946  CDS  NC_008697  281230  282660  1431  mercuric reductase  YP_919388  normal  0.104965  decreased coverage  0.00400898  Nocardioides sp. JS614  Bacteria 
 
 
-
 
Noca_4947  CDS  NC_008697  282758  283147  390  regulatory protein, MerR  YP_919389  normal  0.459947  decreased coverage  0.00286067  Nocardioides sp. JS614  Bacteria 
 
 
-
 
Noca_4948  CDS  NC_008697  283347  284357  1011  bile acid:sodium symporter  YP_919390  normal  0.805052  decreased coverage  0.00366916  Nocardioides sp. JS614  Bacteria 
 
 
-
 
Noca_4949  CDS  NC_008697  284451  284804  354  hypothetical protein  YP_919391  normal  0.847289  decreased coverage  0.00335557  Nocardioides sp. JS614  Bacteria 
 
 
-
 
Noca_4950  CDS  NC_008697  284801  285241  441  regulatory protein, MerR  YP_919392  normal  decreased coverage  0.0034872  Nocardioides sp. JS614  Bacteria 
 
 
-
 
Noca_4951  CDS  NC_008697  285512  286138  627  redoxin domain-containing protein  YP_919393  normal  0.654401  decreased coverage  0.00344255  Nocardioides sp. JS614  Bacteria 
 
 
-
 
Noca_4952  CDS  NC_008697  286148  287041  894  cytochrome c biogenesis protein, transmembrane region  YP_919394  normal  0.329094  decreased coverage  0.00411205  Nocardioides sp. JS614  Bacteria 
 
 
-
 
Noca_R0032  rRNA  NC_008699  2113497  2115016  1520  16S ribosomal RNA    decreased coverage  0.000901783  n/a    Nocardioides sp. JS614  Bacteria 
 
 
-
 
Page 1 of 1    << first  < prev  1  next >  last >>