60 decreased-coverage genes were found for selected organism/s



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Locus tag

Gene type

Replicon accession

From

To

Strand

Gene Length

Product

Protein accession

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Organism name

Kingdom

Coverage Plot

PanDaTox homologs

Experimental validation
Mjls_0051  CDS  NC_009077  54326  55285  960  hypothetical protein  YP_001068355  normal  decreased coverage  0.00417598  Mycobacterium sp. JLS  Bacteria 
 
 
-
 
Mjls_0353  CDS  NC_009077  390905  392191  1287  major facilitator transporter  YP_001068657  decreased coverage  0.00469772  normal  Mycobacterium sp. JLS  Bacteria 
 
 
-
 
Mjls_0607  CDS  NC_009077  663965  665188  1224  cytochrome P450  YP_001068910  decreased coverage  0.00215804  normal  Mycobacterium sp. JLS  Bacteria 
 
 
-
 
Mjls_0907  CDS  NC_009077  982498  985740  3243  DNA helicase/exodeoxyribonuclease V, gamma subunit  YP_001069207  normal  decreased coverage  0.00623789  Mycobacterium sp. JLS  Bacteria 
 
 
-
 
Mjls_0913  CDS  NC_009077  990393  991388  996  Mg2+ transporter protein, CorA family protein  YP_001069213  normal  0.0926548  decreased coverage  0.00569345  Mycobacterium sp. JLS  Bacteria 
 
 
-
 
Mjls_0914  CDS  NC_009077  991466  991774  309  putative protein UsfY  YP_001069214  normal  0.0961571  decreased coverage  0.00424822  Mycobacterium sp. JLS  Bacteria 
 
 
-
 
Mjls_0915  CDS  NC_009077  991771  993351  1581  metal dependent phosphohydrolase  YP_001069215  normal  0.691229  decreased coverage  0.00674138  Mycobacterium sp. JLS  Bacteria 
 
 
-
 
Mjls_0916  CDS  NC_009077  993362  994102  741  hypothetical protein  YP_001069216  normal  decreased coverage  0.00556502  Mycobacterium sp. JLS  Bacteria 
 
 
-
 
Mjls_1058  CDS  NC_009077  1140110  1140508  399  30S ribosomal protein S8  YP_001069357  decreased coverage  4.55347e-08  normal  0.366439  Mycobacterium sp. JLS  Bacteria 
 
 
-
 
Mjls_1059  CDS  NC_009077  1140522  1141061  540  50S ribosomal protein L6  YP_001069358  decreased coverage  5.26273e-07  normal  0.385866  Mycobacterium sp. JLS  Bacteria 
 
 
-
 
Mjls_1355  CDS  NC_009077  1448751  1449614  864  dTDP-4-dehydrorhamnose reductase  YP_001069648  decreased coverage  0.00158528  normal  0.708717  Mycobacterium sp. JLS  Bacteria 
 
 
-
 
Mjls_1356  CDS  NC_009077  1449662  1450552  891  glycosyl transferase family protein  YP_001069649  decreased coverage  0.00877043  normal  0.475844  Mycobacterium sp. JLS  Bacteria 
 
 
-
 
Mjls_1741  CDS  NC_009077  1838224  1838892  669  GntR family transcriptional regulator  YP_001070022  decreased coverage  0.00122783  normal  Mycobacterium sp. JLS  Bacteria 
 
 
-
 
Mjls_1887  CDS  NC_009077  1991975  1992493  519  acetolactate synthase 3 regulatory subunit  YP_001070166  decreased coverage  0.00850496  normal  0.0767808  Mycobacterium sp. JLS  Bacteria 
 
 
-
 
Mjls_1933  CDS  NC_009077  2037973  2041560  3588  condensin subunit Smc  YP_001070212  decreased coverage  0.00525455  normal  Mycobacterium sp. JLS  Bacteria 
 
 
-
 
Mjls_2008  CDS  NC_009077  2116089  2116490  402  hypothetical protein  YP_001070286  decreased coverage  0.00469973  normal  0.239964  Mycobacterium sp. JLS  Bacteria 
 
 
-
 
Mjls_2070  CDS  NC_009077  2180068  2180490  423  MerR family transcriptional regulator  YP_001070348  decreased coverage  0.00505229  normal  0.800786  Mycobacterium sp. JLS  Bacteria 
 
 
-
 
Mjls_2136  CDS  NC_009077  2237114  2237542  429  MarR family transcriptional regulator  YP_001070413  normal  decreased coverage  0.00095835  Mycobacterium sp. JLS  Bacteria 
 
 
-
 
Mjls_2137  CDS  NC_009077  2237588  2238208  621  hypothetical protein  YP_001070414  normal  decreased coverage  0.00112657  Mycobacterium sp. JLS  Bacteria 
 
 
-
 
Mjls_2138  CDS  NC_009077  2238214  2238471  258  hypothetical protein  YP_001070415  normal  decreased coverage  0.00095835  Mycobacterium sp. JLS  Bacteria 
 
 
-
 
Mjls_2139  CDS  NC_009077  2238468  2238878  411  hypothetical protein  YP_001070416  normal  decreased coverage  0.00104938  Mycobacterium sp. JLS  Bacteria 
 
 
-
 
Mjls_2144  CDS  NC_009077  2242254  2243834  1581  (dimethylallyl)adenosine tRNA methylthiotransferase  YP_001070421  normal  decreased coverage  0.00154343  Mycobacterium sp. JLS  Bacteria 
 
 
-
 
Mjls_2145  CDS  NC_009077  2243831  2244439  609  putative transmembrane protein  YP_001070422  normal  decreased coverage  0.00092768  Mycobacterium sp. JLS  Bacteria 
 
 
-
 
Mjls_2146  CDS  NC_009077  2244436  2245815  1380  hypothetical protein  YP_001070423  normal  decreased coverage  0.00132257  Mycobacterium sp. JLS  Bacteria 
 
 
-
 
Mjls_2169  CDS  NC_009077  2267993  2268958  966  ribonuclease BN  YP_001070446  decreased coverage  0.000149157  hitchhiker  0.00191818  Mycobacterium sp. JLS  Bacteria 
 
 
-
 
Mjls_2175  CDS  NC_009077  2272881  2273690  810  polyphosphate glucokinase  YP_001070452  normal  0.169057  decreased coverage  0.000830378  Mycobacterium sp. JLS  Bacteria 
 
 
-
 
Mjls_2176  CDS  NC_009077  2273817  2274677  861  inositol-phosphate phosphatase  YP_001070453  normal  0.206731  decreased coverage  0.000814056  Mycobacterium sp. JLS  Bacteria 
 
 
-
 
Mjls_2312  CDS  NC_009077  2412472  2413905  1434  gamma-aminobutyraldehyde dehydrogenase  YP_001070589  decreased coverage  0.00319664  normal  0.870052  Mycobacterium sp. JLS  Bacteria 
 
 
-
 
Mjls_2342  CDS  NC_009077  2445898  2447547  1650  hypothetical protein  YP_001070619  normal  0.813286  decreased coverage  0.0014283  Mycobacterium sp. JLS  Bacteria 
 
 
-
 
Mjls_2343  CDS  NC_009077  2447540  2448430  891  protein of unknown function, zinc metallopeptidase putative  YP_001070620  normal  decreased coverage  0.000921534  Mycobacterium sp. JLS  Bacteria 
 
 
-
 
Mjls_2452  CDS  NC_009077  2564160  2565731  1572  glucose-6-phosphate 1-dehydrogenase  YP_001070727  decreased coverage  0.00235023  normal  Mycobacterium sp. JLS  Bacteria 
 
 
-
 
Mjls_2499  CDS  NC_009077  2615114  2616604  1491  betaine-aldehyde dehydrogenase  YP_001070774  decreased coverage  0.00184375  normal  Mycobacterium sp. JLS  Bacteria 
 
 
-
 
Mjls_2507  CDS  NC_009077  2626011  2628311  2301  hypothetical protein  YP_001070782  decreased coverage  0.00146366  normal  Mycobacterium sp. JLS  Bacteria 
 
 
-
 
Mjls_2978  CDS  NC_009077  3107098  3108888  1791  ABC transporter related  YP_001071248  normal  0.013676  decreased coverage  0.00456661  Mycobacterium sp. JLS  Bacteria 
 
 
-
 
Mjls_3010  CDS  NC_009077  3143220  3144575  1356  integral membrane sensor signal transduction histidine kinase  YP_001071280  normal  0.256903  decreased coverage  0.00400665  Mycobacterium sp. JLS  Bacteria 
 
 
-
 
Mjls_3011  CDS  NC_009077  3144636  3147476  2841  hypothetical protein  YP_001071281  normal  0.259741  decreased coverage  0.00619992  Mycobacterium sp. JLS  Bacteria 
 
 
-
 
Mjls_3012  CDS  NC_009077  3147738  3148535  798  hypothetical protein  YP_001071282  normal  0.0438797  decreased coverage  0.00331074  Mycobacterium sp. JLS  Bacteria 
 
 
-
 
Mjls_3024  CDS  NC_009077  3159272  3160450  1179  hypothetical protein  YP_001071294  decreased coverage  0.00601193  normal  0.11527  Mycobacterium sp. JLS  Bacteria 
 
 
-
 
Mjls_3264  CDS  NC_009077  3420756  3421913  1158  cell division protein FtsZ  YP_001071533  decreased coverage  0.0044475  normal  0.940856  Mycobacterium sp. JLS  Bacteria 
 
 
-
 
Mjls_3338  CDS  NC_009077  3498322  3501297  2976  bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase  YP_001071607  decreased coverage  0.000693445  normal  0.205001  Mycobacterium sp. JLS  Bacteria 
 
 
-
 
Mjls_3471  CDS  NC_009077  3643895  3644938  1044  heat-inducible transcription repressor  YP_001071740  normal  decreased coverage  0.00335096  Mycobacterium sp. JLS  Bacteria 
 
 
-
 
Mjls_3503  CDS  NC_009077  3695017  3696048  1032  2OG-Fe(II) oxygenase  YP_001071771  decreased coverage  0.00994559  normal  0.800786  Mycobacterium sp. JLS  Bacteria 
 
 
-
 
Mjls_3504  CDS  NC_009077  3696075  3696770  696  hypothetical protein  YP_001071772  decreased coverage  0.00743821  normal  0.718458  Mycobacterium sp. JLS  Bacteria 
 
 
-
 
Mjls_3785  CDS  NC_009077  4006204  4007193  990  hypothetical protein  YP_001072052  decreased coverage  0.0079208  normal  Mycobacterium sp. JLS  Bacteria 
 
 
-
 
Mjls_3807  CDS  NC_009077  4027899  4029320  1422  AMP-dependent synthetase and ligase  YP_001072074  decreased coverage  0.00941755  normal  0.205802  Mycobacterium sp. JLS  Bacteria 
 
 
-
 
Mjls_3858  CDS  NC_009077  4086818  4088071  1254  UDP-N-acetylglucosamine 1-carboxyvinyltransferase  YP_001072125  decreased coverage  1.87129e-07  hitchhiker  0.00273031  Mycobacterium sp. JLS  Bacteria 
 
 
-
 
Mjls_3954  CDS  NC_009077  4178538  4180325  1788  ABC transporter related  YP_001072220  normal  0.320073  decreased coverage  0.00177663  Mycobacterium sp. JLS  Bacteria 
 
 
-
 
Mjls_3955  CDS  NC_009077  4180334  4182229  1896  ABC transporter, transmembrane region  YP_001072221  normal  0.375009  decreased coverage  0.0046772  Mycobacterium sp. JLS  Bacteria 
 
 
-
 
Mjls_3956  CDS  NC_009077  4182247  4184412  2166  formate dehydrogenase  YP_001072222  normal  0.0923262  decreased coverage  0.00564803  Mycobacterium sp. JLS  Bacteria 
 
 
-
 
Mjls_4009  CDS  NC_009077  4240981  4241700  720  O-methyltransferase family protein  YP_001072275  decreased coverage  0.00221471  normal  Mycobacterium sp. JLS  Bacteria 
 
 
-
 
Mjls_4378  CDS  NC_009077  4613124  4614254  1131  acyl-CoA dehydrogenase domain-containing protein  YP_001072640  decreased coverage  0.00748225  normal  0.667747  Mycobacterium sp. JLS  Bacteria 
 
 
-
 
Mjls_4475  CDS  NC_009077  4702550  4703587  1038  prolipoprotein diacylglyceryl transferase  YP_001072736  decreased coverage  0.00262186  normal  Mycobacterium sp. JLS  Bacteria 
 
 
-
 
Mjls_5186  CDS  NC_009077  5437381  5438463  1083  hypothetical protein  YP_001073441  normal  0.250191  decreased coverage  0.000103058  Mycobacterium sp. JLS  Bacteria 
 
 
-
 
Mjls_5187  CDS  NC_009077  5438452  5438757  306  hypothetical protein  YP_001073442  normal  0.680425  decreased coverage  7.61892e-05  Mycobacterium sp. JLS  Bacteria 
 
 
-
 
Mjls_5188  CDS  NC_009077  5438792  5439070  279  hypothetical protein  YP_001073443  normal  0.349005  decreased coverage  6.71692e-05  Mycobacterium sp. JLS  Bacteria 
 
 
-
 
Mjls_5189  CDS  NC_009077  5439121  5439327  207  hypothetical protein  YP_001073444  normal  0.221064  decreased coverage  6.18918e-05  Mycobacterium sp. JLS  Bacteria 
 
 
-
 
Mjls_5190  CDS  NC_009077  5439376  5439954  579  type II secretion system protein  YP_001073445  normal  0.139596  decreased coverage  6.86887e-05  Mycobacterium sp. JLS  Bacteria 
 
 
-
 
Mjls_5603  CDS  NC_009077  5856577  5857287  711  cutinase  YP_001073857  decreased coverage  0.00618421  normal  0.511306  Mycobacterium sp. JLS  Bacteria 
 
 
-
 
Mjls_R0037  rRNA  NC_009077  4081378  4084517  3140  23S ribosomal RNA    normal  0.0260428  decreased coverage  0.00255969  Mycobacterium sp. JLS  Bacteria 
 
 
-
 
Mjls_R0038  rRNA  NC_009077  4084949  4086463  1515  16S ribosomal RNA    decreased coverage  1.01805e-06  decreased coverage  0.0014476  Mycobacterium sp. JLS  Bacteria 
 
 
-
 
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