111 decreased-coverage genes were found for selected organism/s



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Locus tag

Gene type

Replicon accession

From

To

Strand

Gene Length

Product

Protein accession

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Organism name

Kingdom

Coverage Plot

PanDaTox homologs

Experimental validation
Daro_0001  CDS  NC_007298  151  1548  1398  chromosomal replication initiation protein  YP_283230  hitchhiker  1.0295e-06  decreased coverage  0.002869  Dechloromonas aromatica RCB  Bacteria 
 
 
-
 
Daro_0002  CDS  NC_007298  1758  2864  1107  DNA polymerase III, beta subunit  YP_283231  decreased coverage  8.266e-08  decreased coverage  0.00275233  Dechloromonas aromatica RCB  Bacteria 
 
 
-
 
Daro_0052  CDS  NC_007298  61690  62463  774  hypothetical protein  YP_283281  decreased coverage  0.0060351  normal  0.567667  Dechloromonas aromatica RCB  Bacteria 
 
 
-
 
Daro_0201  CDS  NC_007298  217116  217880  765  ABC-type Mn2+/Zn2+ transport systems permease components-like protein  YP_283430  decreased coverage  0.00810326  normal  Dechloromonas aromatica RCB  Bacteria 
 
 
-
 
Daro_0214  CDS  NC_007298  229610  231757  2148  type II and III secretion system secretin  YP_283443  decreased coverage  0.00866012  normal  Dechloromonas aromatica RCB  Bacteria 
 
 
-
 
Daro_0226  CDS  NC_007298  251452  253089  1638  acyl-CoA synthetase  YP_283455  decreased coverage  0.00200455  normal  Dechloromonas aromatica RCB  Bacteria 
 
 
-
 
Daro_0285  CDS  NC_007298  328573  328908  336  hypothetical protein  YP_283514  decreased coverage  0.00144128  normal  Dechloromonas aromatica RCB  Bacteria 
 
 
-
 
Daro_0314  CDS  NC_007298  361226  361603  378  30S ribosomal protein S12  YP_283543  decreased coverage  1.46704e-24  hitchhiker  0.000521064  Dechloromonas aromatica RCB  Bacteria 
 
 
-
 
Daro_0315  CDS  NC_007298  361714  362184  471  30S ribosomal protein S7  YP_283544  decreased coverage  9.99875e-22  hitchhiker  0.000536681  Dechloromonas aromatica RCB  Bacteria 
 
 
-
 
Daro_0319  CDS  NC_007298  365985  366623  639  50S ribosomal protein L3  YP_283548  decreased coverage  9.14788e-24  hitchhiker  3.84813e-05  Dechloromonas aromatica RCB  Bacteria 
 
 
-
 
Daro_0387  CDS  NC_007298  419183  419641  459  hypothetical protein  YP_283616  decreased coverage  8.98134e-17  normal  0.0138646  Dechloromonas aromatica RCB  Bacteria 
 
 
-
 
Daro_0425  CDS  NC_007298  468403  468693  291  co-chaperonin GroES  YP_283652  decreased coverage  1.16071e-20  hitchhiker  0.002869  Dechloromonas aromatica RCB  Bacteria 
 
 
-
 
Daro_0428  CDS  NC_007298  470912  472591  1680  Na+/solute symporter  YP_283655  hitchhiker  0.00400759  decreased coverage  9.17486e-05  Dechloromonas aromatica RCB  Bacteria 
 
 
-
 
Daro_0429  CDS  NC_007298  472916  473587  672  response regulator receiver:transcriptional regulatory protein, C-terminal  YP_283656  normal  0.199286  decreased coverage  0.000258733  Dechloromonas aromatica RCB  Bacteria 
 
 
-
 
Daro_0430  CDS  NC_007298  473565  475070  1506  sensor histidine kinase  YP_283657  normal  decreased coverage  0.00032493  Dechloromonas aromatica RCB  Bacteria 
 
 
-
 
Daro_0442  CDS  NC_007298  485768  488443  2676  pyruvate dehydrogenase subunit E1  YP_283669  decreased coverage  8.2511e-11  normal  0.261896  Dechloromonas aromatica RCB  Bacteria 
 
 
-
 
Daro_0575  CDS  NC_007298  641979  642662  684  two component transcriptional regulator  YP_283802  decreased coverage  0.00284025  normal  Dechloromonas aromatica RCB  Bacteria 
 
 
-
 
Daro_0635  CDS  NC_007298  698082  698711  630  hypothetical protein  YP_283862  decreased coverage  3.23056e-10  normal  Dechloromonas aromatica RCB  Bacteria 
 
 
-
 
Daro_0667  CDS  NC_007298  735757  736836  1080  murein-DD-endopeptidase  YP_283893  decreased coverage  1.56881e-05  normal  Dechloromonas aromatica RCB  Bacteria 
 
 
-
 
Daro_0713  CDS  NC_007298  783587  785014  1428  cbb3-type cytochrome c oxidase subunit I  YP_283939  decreased coverage  3.29894e-13  normal  0.219559  Dechloromonas aromatica RCB  Bacteria 
 
 
-
 
Daro_0814  CDS  NC_007298  882483  885206  2724  assimilatory nitrate reductase (NADH) alpha subunit apoprotein  YP_284040  decreased coverage  7.93211e-07  hitchhiker  0.00060648  Dechloromonas aromatica RCB  Bacteria 
 
 
-
 
Daro_0882  CDS  NC_007298  955624  956238  615  general secretion pathway protein H  YP_284108  decreased coverage  0.00289529  normal  0.110934  Dechloromonas aromatica RCB  Bacteria 
 
 
-
 
Daro_0899  CDS  NC_007298  972585  974345  1761  monooxygenase, FAD-binding:FAD dependent oxidoreductase  YP_284125  decreased coverage  1.67308e-16  normal  Dechloromonas aromatica RCB  Bacteria 
 
 
-
 
Daro_1321  CDS  NC_007298  1438601  1439995  1395  glutamyl-tRNA synthetase  YP_284541  decreased coverage  2.46268e-09  normal  0.0216762  Dechloromonas aromatica RCB  Bacteria 
 
 
-
 
Daro_1348  CDS  NC_007298  1464087  1465211  1125  zinc-containing alcohol dehydrogenase superfamily protein  YP_284567  hitchhiker  4.39495e-14  decreased coverage  1.56637e-06  Dechloromonas aromatica RCB  Bacteria 
 
 
-
 
Daro_1349  CDS  NC_007298  1465832  1466932  1101  BNR repeat-containing glycosyl hydrolase  YP_284568  decreased coverage  5.86783e-22  decreased coverage  1.3848e-06  Dechloromonas aromatica RCB  Bacteria 
 
 
 
Daro_1350  CDS  NC_007298  1466929  1469301  2373  RND efflux transporter  YP_284569  hitchhiker  8.32069e-10  decreased coverage  2.22062e-06  Dechloromonas aromatica RCB  Bacteria 
 
 
-
 
Daro_1352  CDS  NC_007298  1471035  1472288  1254  hypothetical protein  YP_284571  hitchhiker  6.99825e-06  decreased coverage  1.6423e-06  Dechloromonas aromatica RCB  Bacteria 
 
 
-
 
Daro_1353  CDS  NC_007298  1472428  1473381  954  3-(2,3-dihydroxyphenyl)propionate dioxygenase  YP_284572  hitchhiker  0.000498865  decreased coverage  1.37148e-06  Dechloromonas aromatica RCB  Bacteria 
 
 
-
 
Daro_1354  CDS  NC_007298  1473468  1474256  789  hydratase/decarboxylase  YP_284573  hitchhiker  0.000612409  decreased coverage  1.18865e-06  Dechloromonas aromatica RCB  Bacteria 
 
 
-
 
Daro_1355  CDS  NC_007298  1474285  1475199  915  acetaldehyde dehydrogenase  YP_284574  hitchhiker  4.94907e-05  decreased coverage  1.35829e-06  Dechloromonas aromatica RCB  Bacteria 
 
 
-
 
Daro_1388  CDS  NC_007298  1518422  1518625  204  cold-shock DNA-binding protein family protein  YP_284607  decreased coverage  2.02704e-14  normal  0.239262  Dechloromonas aromatica RCB  Bacteria 
 
 
-
 
Daro_1548  CDS  NC_007298  1657624  1658952  1329  aromatic hydrocarbon degradation protein  YP_284767  decreased coverage  3.3121e-15  hitchhiker  0.00764259  Dechloromonas aromatica RCB  Bacteria 
 
 
-
 
Daro_1549  CDS  NC_007298  1659110  1661509  2400  3-hydroxyacyl-CoA dehydrogenase  YP_284768  hitchhiker  3.85995e-14  decreased coverage  0.00376612  Dechloromonas aromatica RCB  Bacteria 
 
 
-
 
Daro_1557  CDS  NC_007298  1670119  1671408  1290  hypothetical protein  YP_284776  decreased coverage  3.4261e-20  normal  0.109896  Dechloromonas aromatica RCB  Bacteria 
 
 
-
 
Daro_1568  CDS  NC_007298  1681034  1682026  993  hypothetical protein  YP_284787  decreased coverage  0.00971838  normal  0.55843  Dechloromonas aromatica RCB  Bacteria 
 
 
-
 
Daro_1751  CDS  NC_007298  1883180  1883650  471  Outer membrane chaperone Skp (OmpH)  YP_284968  decreased coverage  0.00167678  normal  Dechloromonas aromatica RCB  Bacteria 
 
 
-
 
Daro_1807  CDS  NC_007298  1943580  1943939  360  hypothetical protein  YP_285023  decreased coverage  0.000530578  normal  0.437245  Dechloromonas aromatica RCB  Bacteria 
 
 
-
 
Daro_1842  CDS  NC_007298  1981064  1982197  1134  hypothetical protein  YP_285058  hitchhiker  0.00351622  decreased coverage  0.00905598  Dechloromonas aromatica RCB  Bacteria 
 
 
-
 
Daro_1843  CDS  NC_007298  1982160  1982489  330  hypothetical protein  YP_285059  hitchhiker  9.04825e-05  decreased coverage  0.00731222  Dechloromonas aromatica RCB  Bacteria 
 
 
-
 
Daro_1844  CDS  NC_007298  1982489  1983046  558  electron transport protein SCO1/SenC  YP_285060  hitchhiker  1.25528e-05  decreased coverage  0.00834843  Dechloromonas aromatica RCB  Bacteria 
 
 
-
 
Daro_1845  CDS  NC_007298  1983113  1983352  240  hypothetical protein  YP_285061  hitchhiker  7.42395e-09  decreased coverage  0.00735911  Dechloromonas aromatica RCB  Bacteria 
 
 
-
 
Daro_1846  CDS  NC_007298  1983520  1983924  405  flagellar basal body-associated protein FliL  YP_285062  hitchhiker  1.88721e-13  decreased coverage  0.00824516  Dechloromonas aromatica RCB  Bacteria 
 
 
-
 
Daro_1847  CDS  NC_007298  1983935  1984738  804  NAD-dependent deacetylase  YP_285063  hitchhiker  2.54805e-22  decreased coverage  0.00894214  Dechloromonas aromatica RCB  Bacteria 
 
 
-
 
Daro_1848  CDS  NC_007298  1984893  1985450  558  phasin  YP_285064  unclonable  1.32007e-26  decreased coverage  0.00809147  Dechloromonas aromatica RCB  Bacteria 
 
 
-
 
Daro_1849  CDS  NC_007298  1985557  1985736  180  hypothetical protein  YP_285065  hitchhiker  7.61292e-18  decreased coverage  0.00798915  Dechloromonas aromatica RCB  Bacteria 
 
 
-
 
Daro_1862  CDS  NC_007298  2001582  2002409  828  ABC-type phosphate/phosphonate transport system periplasmic component-like protein  YP_285078  decreased coverage  8.00692e-20  normal  Dechloromonas aromatica RCB  Bacteria 
 
 
-
 
Daro_1930  CDS  NC_007298  2075900  2076064  165  hypothetical protein  YP_285146  decreased coverage  2.0471e-13  normal  0.56965  Dechloromonas aromatica RCB  Bacteria 
 
 
-
 
Daro_1936  CDS  NC_007298  2084568  2086214  1647  electron transfer flavoprotein-ubiquinone oxidoreductase  YP_285152  decreased coverage  0.000473381  normal  0.135998  Dechloromonas aromatica RCB  Bacteria 
 
 
-
 
Daro_1950  CDS  NC_007298  2102758  2103975  1218  cysteine desulfurase IscS  YP_285166  decreased coverage  8.43977e-09  normal  0.404205  Dechloromonas aromatica RCB  Bacteria 
 
 
-
 
Daro_2019  CDS  NC_007298  2172234  2173469  1236  3-oxoacyl-(acyl carrier protein) synthase II  YP_285234  decreased coverage  0.000311952  normal  Dechloromonas aromatica RCB  Bacteria 
 
 
-
 
Daro_2129  CDS  NC_007298  2299854  2300789  936  transcriptional regulator CysB-like protein  YP_285341  hitchhiker  2.74673e-16  decreased coverage  1.24662e-06  Dechloromonas aromatica RCB  Bacteria 
 
 
-
 
Daro_2130    NC_007298  2300820  2301206  387      hitchhiker  3.79777e-15  decreased coverage  5.28625e-05  Dechloromonas aromatica RCB  Bacteria 
 
 
-
 
Daro_2131  CDS  NC_007298  2301348  2301758  411  hypothetical protein  YP_285342  hitchhiker  1.82057e-16  decreased coverage  6.14372e-05  Dechloromonas aromatica RCB  Bacteria 
 
 
-
 
Daro_2132  CDS  NC_007298  2302151  2302765  615  formylmethionine deformylase  YP_285343  hitchhiker  4.8462e-16  decreased coverage  6.56702e-05  Dechloromonas aromatica RCB  Bacteria 
 
 
-
 
Daro_2133  CDS  NC_007298  2302837  2303349  513  hypothetical protein  YP_285344  hitchhiker  2.15092e-19  decreased coverage  7.13807e-05  Dechloromonas aromatica RCB  Bacteria 
 
 
-
 
Daro_2134  CDS  NC_007298  2303454  2304449  996  thiosulphate-binding protein  YP_285345  hitchhiker  3.73195e-21  decreased coverage  0.000103932  Dechloromonas aromatica RCB  Bacteria 
 
 
-
 
Daro_2135  CDS  NC_007298  2304451  2304744  294  ArsR family transcriptional regulator  YP_285346  unclonable  2.25327e-28  decreased coverage  7.95687e-05  Dechloromonas aromatica RCB  Bacteria 
 
 
-
 
Daro_2136  CDS  NC_007298  2304937  2305119  183  hypothetical protein  YP_285347  hitchhiker  7.71869e-23  decreased coverage  8.09353e-05  Dechloromonas aromatica RCB  Bacteria 
 
 
-
 
Daro_2137  CDS  NC_007298  2305171  2305818  648  putative cysteine desulfurase  YP_285348  hitchhiker  1.26763e-17  decreased coverage  9.0972e-05  Dechloromonas aromatica RCB  Bacteria 
 
 
-
 
Daro_2138  CDS  NC_007298  2305885  2306859  975  cysteine synthase  YP_285349  hitchhiker  1.66923e-09  decreased coverage  9.32984e-05  Dechloromonas aromatica RCB  Bacteria 
 
 
-
 
Daro_2139  CDS  NC_007298  2306887  2307417  531  rhodanese-like protein  YP_285350  hitchhiker  0.000109425  decreased coverage  8.30085e-05  Dechloromonas aromatica RCB  Bacteria 
 
 
-
 
Daro_2293  CDS  NC_007298  2476388  2477197  810  GGDEF  YP_285500  decreased coverage  0.00190961  normal  Dechloromonas aromatica RCB  Bacteria 
 
 
-
 
Daro_2396  CDS  NC_007298  2583181  2584053  873  hypothetical protein  YP_285602  decreased coverage  0.000837429  normal  0.548926  Dechloromonas aromatica RCB  Bacteria 
 
 
-
 
Daro_2442  CDS  NC_007298  2643058  2643837  780  peptidase S1 and S6, chymotrypsin/Hap  YP_285647  decreased coverage  0.000823282  normal  Dechloromonas aromatica RCB  Bacteria 
 
 
-
 
Daro_2447  CDS  NC_007298  2647294  2647719  426  hypothetical protein  YP_285652  decreased coverage  0.000244827  normal  Dechloromonas aromatica RCB  Bacteria 
 
 
-
 
Daro_2452  CDS  NC_007298  2651741  2654455  2715  translation initiation factor IF-2  YP_285657  decreased coverage  0.00150352  normal  Dechloromonas aromatica RCB  Bacteria 
 
 
-
 
Daro_2525  CDS  NC_007298  2722260  2722577  318  histone-like nucleoid-structuring protein H-NS  YP_285728  decreased coverage  9.16284e-21  normal  0.0335348  Dechloromonas aromatica RCB  Bacteria 
 
 
-
 
Daro_2774  CDS  NC_007298  2973776  2974558  783  hydratase/decarboxylase  YP_285974  decreased coverage  4.69641e-06  normal  Dechloromonas aromatica RCB  Bacteria 
 
 
-
 
Daro_2808  CDS  NC_007298  3015907  3016119  213  hypothetical protein  YP_286008  decreased coverage  3.18588e-07  normal  Dechloromonas aromatica RCB  Bacteria 
 
 
-
 
Daro_2827  CDS  NC_007298  3035302  3037524  2223  RelA/SpoT protein  YP_286027  decreased coverage  0.00393712  normal  Dechloromonas aromatica RCB  Bacteria 
 
 
-
 
Daro_2933  CDS  NC_007298  3159747  3161369  1623  histidine kinase, HAMP region: chemotaxis sensory transducer  YP_286133  decreased coverage  1.34891e-18  normal  Dechloromonas aromatica RCB  Bacteria 
 
 
-
 
Daro_2954  CDS  NC_007298  3191622  3192452  831  hypothetical protein  YP_286154  decreased coverage  0.00502259  normal  Dechloromonas aromatica RCB  Bacteria 
 
 
-
 
Daro_2993  CDS  NC_007298  3230595  3231599  1005  TRAP dicarboxylate transporter- DctP subunit  YP_286193  decreased coverage  0.00571621  normal  Dechloromonas aromatica RCB  Bacteria 
 
 
-
 
Daro_2999  CDS  NC_007298  3237789  3238013  225  50S ribosomal protein L31  YP_286199  decreased coverage  0.00163219  normal  Dechloromonas aromatica RCB  Bacteria 
 
 
-
 
Daro_3063  CDS  NC_007298  3306414  3306794  381  50S ribosomal protein L19  YP_286263  decreased coverage  1.73894e-23  unclonable  2.80297e-08  Dechloromonas aromatica RCB  Bacteria 
 
 
-
 
Daro_3142  CDS  NC_007298  3383580  3384260  681  DNA repair protein RadC  YP_286342  decreased coverage  0.00442306  normal  Dechloromonas aromatica RCB  Bacteria 
 
 
-
 
Daro_3210  CDS  NC_007298  3460570  3461175  606  MotA/TolQ/ExbB proton channel  YP_286410  decreased coverage  2.8591e-12  normal  0.177382  Dechloromonas aromatica RCB  Bacteria 
 
 
-
 
Daro_3248  CDS  NC_007298  3498275  3499111  837  protocatechuate 4,5-dioxygenase subunit beta  YP_286448  decreased coverage  6.26478e-10  normal  Dechloromonas aromatica RCB  Bacteria 
 
 
-
 
Daro_3249  CDS  NC_007298  3499130  3499429  300  hypothetical protein  YP_286449  decreased coverage  4.97835e-10  normal  Dechloromonas aromatica RCB  Bacteria 
 
 
-
 
Daro_3250  CDS  NC_007298  3499443  3500264  822  Alpha/beta hydrolase fold  YP_286450  decreased coverage  1.80136e-10  normal  Dechloromonas aromatica RCB  Bacteria 
 
 
-
 
Daro_3282  CDS  NC_007298  3533534  3534229  696  cytochrome B561  YP_286482  decreased coverage  0.00209273  normal  Dechloromonas aromatica RCB  Bacteria 
 
 
-
 
Daro_3493  CDS  NC_007298  3741243  3742439  1197  cell division protein FtsZ  YP_286692  decreased coverage  0.00398885  normal  0.338691  Dechloromonas aromatica RCB  Bacteria 
 
 
-
 
Daro_3499  CDS  NC_007298  3747803  3748966  1164  cell cycle protein  YP_286698  decreased coverage  0.00851666  normal  0.20091  Dechloromonas aromatica RCB  Bacteria 
 
 
-
 
Daro_3521  CDS  NC_007298  3771025  3771624  600  BRO, N-terminal  YP_286720  hitchhiker  0.000239324  decreased coverage  0.000343043  Dechloromonas aromatica RCB  Bacteria 
 
 
-
 
Daro_3522  CDS  NC_007298  3772077  3772478  402  hypothetical protein  YP_286721  hitchhiker  7.01722e-07  decreased coverage  0.000356695  Dechloromonas aromatica RCB  Bacteria 
 
 
-
 
Daro_3523  CDS  NC_007298  3773077  3773631  555  resolvase, N-terminal:resolvase helix-turn-helix region  YP_286722  hitchhiker  2.57012e-12  decreased coverage  0.00040401  Dechloromonas aromatica RCB  Bacteria 
 
 
-
 
Daro_3640  CDS  NC_007298  3914242  3915174  933  phosphoribosylaminoimidazole-succinocarboxamide synthase  YP_286839  decreased coverage  2.09948e-06  normal  Dechloromonas aromatica RCB  Bacteria 
 
 
-
 
Daro_3653  CDS  NC_007298  3925937  3927400  1464  ATPas  YP_286852  decreased coverage  5.96179e-19  normal  Dechloromonas aromatica RCB  Bacteria 
 
 
-
 
Daro_3778  CDS  NC_007298  4064180  4066570  2391  putative transport protein  YP_286977  decreased coverage  4.48082e-06  decreased coverage  6.96113e-05  Dechloromonas aromatica RCB  Bacteria 
 
 
-
 
Daro_3779  CDS  NC_007298  4066591  4067556  966  BNR repeat-containing glycosyl hydrolase  YP_286978  hitchhiker  0.00208447  decreased coverage  0.000226347  Dechloromonas aromatica RCB  Bacteria 
 
 
-
 
Daro_3780  CDS  NC_007298  4067806  4067997  192  4-oxalocrotonate tautomerase  YP_286979  hitchhiker  0.00700044  decreased coverage  0.000166532  Dechloromonas aromatica RCB  Bacteria 
 
 
-
 
Daro_3781  CDS  NC_007298  4068014  4068802  789  hydratase/decarboxylase  YP_286980  normal  0.0303669  decreased coverage  0.000202677  Dechloromonas aromatica RCB  Bacteria 
 
 
-
 
Daro_3789  CDS  NC_007298  4075147  4076073  927  glyoxalase/bleomycin resistance protein/dioxygenase  YP_286988  decreased coverage  1.01416e-18  hitchhiker  0.00301341  Dechloromonas aromatica RCB  Bacteria 
 
 
-
 
Daro_3790  CDS  NC_007298  4076256  4076963  708  GntR family transcriptional regulator  YP_286989  decreased coverage  1.95314e-15  hitchhiker  0.00275233  Dechloromonas aromatica RCB  Bacteria 
 
 
-
 
Daro_3813  CDS  NC_007298  4095470  4098361  2892  PAS/PAC sensor hybrid histidine kinase  YP_287011  decreased coverage  0.000539796  normal  0.0501343  Dechloromonas aromatica RCB  Bacteria 
 
 
-
 
Daro_3814  CDS  NC_007298  4098547  4099941  1395  aromatic hydrocarbon degradation protein  YP_287012  decreased coverage  0.0090168  normal  0.0676668  Dechloromonas aromatica RCB  Bacteria 
 
 
-
 
Daro_3859  CDS  NC_007298  4151842  4152462  621  cytochrome c5  YP_287057  decreased coverage  7.64521e-06  normal  Dechloromonas aromatica RCB  Bacteria 
 
 
-
 
Daro_3941  CDS  NC_007298  4236056  4236646  591  hypothetical protein  YP_287139  decreased coverage  3.87144e-12  normal  Dechloromonas aromatica RCB  Bacteria 
 
 
-
 
Daro_4022  CDS  NC_007298  4321327  4321878  552  tripartite ATP-independent periplasmic transporter DctQ  YP_287219  decreased coverage  0.000610281  normal  Dechloromonas aromatica RCB  Bacteria 
 
 
-
 
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