193 decreased-coverage genes were found for selected organism/s



Page 1 of 2    << first  < prev  1  2    next >  last >>   


Locus tag

Gene type

Replicon accession

From

To

Strand

Gene Length

Product

Protein accession

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Organism name

Kingdom

Coverage Plot

PanDaTox homologs

Experimental validation
Mmc1_0053  CDS  NC_008576  55693  57591  1899  transposase, IS4 family protein  YP_863988  decreased coverage  0.000750234  normal  0.48496  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_0054  CDS  NC_008576  57757  59304  1548  methyl-accepting chemotaxis sensory transducer  YP_863989  decreased coverage  2.36941e-05  normal  0.277951  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_0122  CDS  NC_008576  126903  127619  717  hypothetical protein  YP_864055  decreased coverage  3.45463e-09  normal  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_0141  CDS  NC_008576  150542  151063  522  hypothetical protein  YP_864074  decreased coverage  1.94352e-08  normal  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_0248  CDS  NC_008576  281241  282290  1050  N-acetyl-gamma-glutamyl-phosphate reductase  YP_864181  decreased coverage  7.38561e-07  normal  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_0249  CDS  NC_008576  282439  282696  258  4Fe-4S ferredoxin iron-sulfur binding domain-containing protein  YP_864182  decreased coverage  5.41345e-08  normal  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_0274  CDS  NC_008576  312216  312671  456  hypothetical protein  YP_864207  decreased coverage  8.1165e-07  normal  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_0275  CDS  NC_008576  312740  313471  732  short-chain dehydrogenase/reductase SDR  YP_864208  decreased coverage  3.79715e-06  normal  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_0279  CDS  NC_008576  318313  319587  1275  metal dependent phosphohydrolase  YP_864212  decreased coverage  1.5793e-07  normal  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_0323  CDS  NC_008576  375510  375869  360  IS66 Orf2 family protein  YP_864256  decreased coverage  3.16141e-07  normal  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_0324  CDS  NC_008576  375869  376210  342  hypothetical protein  YP_864257  decreased coverage  3.16141e-07  normal  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_0325    NC_008576  376296  376529  234      decreased coverage  1.8959e-07  normal  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_0336  CDS  NC_008576  388146  388535  390  transmembrane region and signal peptide prediction  YP_864268  decreased coverage  1.51366e-08  normal  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_0344  CDS  NC_008576  397822  398307  486  XRE family transcriptional regulator  YP_864276  decreased coverage  2.6589e-08  normal  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_0356  CDS  NC_008576  408250  409083  834  cytochrome c1  YP_864288  decreased coverage  1.88446e-05  normal  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_0357  CDS  NC_008576  409103  410308  1206  cytochrome b/b6 domain-containing protein  YP_864289  decreased coverage  0.000177804  normal  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_0365  CDS  NC_008576  419701  419898  198  50S ribosomal protein L35P  YP_864297  decreased coverage  2.90331e-07  normal  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_0366  CDS  NC_008576  420008  420361  354  50S ribosomal protein L20P  YP_864298  decreased coverage  7.02723e-07  normal  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_0438  CDS  NC_008576  524786  526807  2022  membrane protease FtsH catalytic subunit  YP_864369  decreased coverage  7.47191e-06  normal  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_0479  CDS  NC_008576  577410  578162  753  hypothetical protein  YP_864410  decreased coverage  3.14446e-05  normal  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_0550  CDS  NC_008576  667332  668795  1464  hypothetical protein  YP_864481  decreased coverage  1.69921e-05  normal  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_0608  CDS  NC_008576  737421  738404  984  hypothetical protein  YP_864535  decreased coverage  0.00667196  normal  0.552957  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_0653  CDS  NC_008576  786252  787505  1254  RNA-directed DNA polymerase (Reverse transcriptase)  YP_864580  decreased coverage  0.008692  normal  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_0660  CDS  NC_008576  792312  792653  342  hypothetical protein  YP_864587  decreased coverage  0.00218186  normal  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_0661  CDS  NC_008576  792653  793012  360  IS66 Orf2 family protein  YP_864588  decreased coverage  0.00198496  normal  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_0678  CDS  NC_008576  813520  813879  360  IS66 Orf2 family protein  YP_864605  decreased coverage  4.11933e-07  normal  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_0679  CDS  NC_008576  813879  814220  342  hypothetical protein  YP_864606  decreased coverage  3.91373e-07  normal  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_0680  CDS  NC_008576  814351  816636  2286  hypothetical protein  YP_864607  decreased coverage  0.000857964  normal  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_0696  CDS  NC_008576  832963  833211  249  Na+/H+ antiporter-like protein  YP_864623  decreased coverage  0.00158966  normal  0.51761  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_0697  CDS  NC_008576  833321  833974  654  FkbM family methyltransferase  YP_864624  decreased coverage  0.00286744  normal  0.545392  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_0700  CDS  NC_008576  837559  838407  849  hypothetical protein  YP_864627  decreased coverage  0.00453627  normal  0.367447  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_0747  CDS  NC_008576  923947  925245  1299  cell division protein FtsZ  YP_864674  decreased coverage  1.00663e-06  normal  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_0778  CDS  NC_008576  961557  962120  564  invasion associated locus B family protein  YP_864705  decreased coverage  1.82152e-08  normal  0.361158  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_0779  CDS  NC_008576  962203  964446  2244  polypeptide-transport-associated domain-containing protein  YP_864706  decreased coverage  0.000230796  normal  0.181114  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_0802  CDS  NC_008576  1000576  1002564  1989  hypothetical protein  YP_864728  decreased coverage  6.29904e-06  normal  0.50337  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_0844  CDS  NC_008576  1051998  1054076  2079  translation elongation factor 2 (EF-2/EF-G)  YP_864769  normal  0.0265516  decreased coverage  1.71204e-05  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_0845  CDS  NC_008576  1054110  1055300  1191  elongation factor Tu  YP_864770  hitchhiker  0.000420071  decreased coverage  1.29254e-05  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_0846  CDS  NC_008576  1055334  1055645  312  SSU ribosomal protein S10P  YP_864771  hitchhiker  2.64723e-06  decreased coverage  9.47215e-06  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_0847  CDS  NC_008576  1055769  1056413  645  50S ribosomal protein L3P  YP_864772  hitchhiker  4.79377e-07  decreased coverage  1.16579e-05  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_0848  CDS  NC_008576  1056437  1057060  624  50S ribosomal protein L4P  YP_864773  hitchhiker  3.92239e-05  decreased coverage  1.22182e-05  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_0849  CDS  NC_008576  1057057  1057356  300  50S ribosomal protein L23P  YP_864774  hitchhiker  8.28313e-06  decreased coverage  1.12275e-05  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_0850  CDS  NC_008576  1057380  1058213  834  50S ribosomal protein L2  YP_864775  hitchhiker  0.00104266  decreased coverage  1.30499e-05  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_0867  CDS  NC_008576  1064530  1065858  1329  protein translocase subunit secY/sec61 alpha  YP_864792  decreased coverage  1.52006e-07  hitchhiker  0.00837403  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_0868  CDS  NC_008576  1065911  1066024  114  50S ribosomal protein L36P  YP_864793  decreased coverage  8.07899e-11  hitchhiker  0.00596219  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_0948  CDS  NC_008576  1165682  1166245  564  translation elongation factor P (EF-P)  YP_864872  hitchhiker  0.00103286  decreased coverage  0.000108298  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_0949  CDS  NC_008576  1166249  1167202  954  tRNA synthetase, class II (D, K and N)  YP_864873  hitchhiker  0.000776878  decreased coverage  0.000118121  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_0950  CDS  NC_008576  1167420  1167977  558  redoxin domain-containing protein  YP_864874  hitchhiker  6.26081e-08  decreased coverage  9.5719e-05  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_1005  CDS  NC_008576  1237060  1237443  384  hypothetical protein  YP_864929  decreased coverage  3.44414e-05  normal  0.889606  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_1011  CDS  NC_008576  1241028  1241426  399  hypothetical protein  YP_864935  decreased coverage  4.0249e-06  normal  0.898797  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_1106  CDS  NC_008576  1385728  1386186  459  cytochrome c, class II  YP_865030  decreased coverage  0.00108735  normal  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_1165  CDS  NC_008576  1465795  1466976  1182  acetyl-CoA acetyltransferase  YP_865082  decreased coverage  0.000755496  normal  0.122862  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_1187  CDS  NC_008576  1484510  1485121  612  hypothetical protein  YP_865104  normal  0.737535  decreased coverage  7.32345e-05  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_1188  CDS  NC_008576  1485118  1485492  375  ferredoxin  YP_865105  normal  decreased coverage  6.41343e-05  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_1189  CDS  NC_008576  1485536  1486081  546  NifZ family protein  YP_865106  normal  decreased coverage  6.88158e-05  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_1190  CDS  NC_008576  1486062  1487246  1185  homocitrate synthase  YP_865107  normal  decreased coverage  8.5234e-05  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_1191  CDS  NC_008576  1487292  1487609  318  4Fe-4S ferredoxin iron-sulfur binding domain-containing protein  YP_865108  normal  decreased coverage  6.82014e-05  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_1192  CDS  NC_008576  1487654  1488103  450  hypothetical protein  YP_865109  normal  decreased coverage  7.19142e-05  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_1193  CDS  NC_008576  1488146  1488586  441  dinitrogenase iron-molybdenum cofactor biosynthesis  YP_865110  normal  decreased coverage  6.88158e-05  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_1194  CDS  NC_008576  1488591  1490000  1410  nitrogenase molybdenum-iron cofactor biosynthesis protein NifN  YP_865111  normal  0.620577  decreased coverage  9.92297e-05  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_1195  CDS  NC_008576  1489993  1491378  1386  nitrogenase MoFe cofactor biosynthesis protein NifE  YP_865112  hitchhiker  0.00211602  decreased coverage  0.000102786  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_1196  CDS  NC_008576  1491905  1493110  1206  hypothetical protein  YP_865113  unclonable  2.70508e-09  decreased coverage  9.5719e-05  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_1197  CDS  NC_008576  1493232  1493531  300  hypothetical protein  YP_865114  normal  0.0178983  decreased coverage  8.07551e-05  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_1205  CDS  NC_008576  1502128  1504302  2175  adenylate/guanylate cyclase  YP_865122  decreased coverage  0.000104961  normal  0.0234559  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_1361  CDS  NC_008576  1656197  1657018  822  hypothetical protein  YP_865278  decreased coverage  8.44893e-05  normal  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_1374  CDS  NC_008576  1667686  1667928  243  hypothetical protein  YP_865291  decreased coverage  5.7164e-05  normal  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_1412  CDS  NC_008576  1715650  1716684  1035  rod shape-determining protein MreB  YP_865329  decreased coverage  4.97097e-08  normal  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_1450  CDS  NC_008576  1764219  1764827  609  hypothetical protein  YP_865365  decreased coverage  3.95301e-05  normal  0.21566  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_1451  CDS  NC_008576  1765149  1768007  2859  hypothetical protein  YP_865366  decreased coverage  0.00912397  normal  0.310535  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_1466  CDS  NC_008576  1788353  1789138  786  response regulator receiver protein  YP_865381  decreased coverage  4.84673e-05  normal  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_1467  CDS  NC_008576  1789135  1790946  1812  ABC transporter related  YP_865382  decreased coverage  2.45046e-06  normal  0.820859  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_1489  CDS  NC_008576  1820382  1822571  2190  multi-sensor signal transduction histidine kinase  YP_865404  normal  decreased coverage  0.00567966  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_1490  CDS  NC_008576  1822568  1823140  573  hypothetical protein  YP_865405  normal  0.843159  decreased coverage  0.00367524  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_1491  CDS  NC_008576  1823262  1823972  711  two component transcriptional regulator  YP_865406  normal  decreased coverage  0.00391258  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_1492  CDS  NC_008576  1823969  1825843  1875  multi-sensor signal transduction histidine kinase  YP_865407  normal  0.411872  decreased coverage  0.00494446  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_1495  CDS  NC_008576  1828593  1829711  1119  molybdopterin synthase subunit MoaE  YP_865410  normal  decreased coverage  0.00326652  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_1496  CDS  NC_008576  1829729  1830934  1206  molybdopterin molybdochelatase  YP_865411  normal  decreased coverage  0.00391258  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_1524  CDS  NC_008576  1868991  1869479  489  rhodanese domain-containing protein  YP_865439  decreased coverage  1.64896e-09  normal  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_1532  CDS  NC_008576  1881670  1883910  2241  Sel1 domain-containing protein  YP_865447  decreased coverage  0.00292625  normal  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_1573  CDS  NC_008576  1937723  1938826  1104  HflK protein  YP_865488  decreased coverage  4.27817e-07  normal  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_1574  CDS  NC_008576  1938840  1939742  903  HflC protein  YP_865489  decreased coverage  1.32487e-06  normal  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_1599  CDS  NC_008576  1974183  1976174  1992  secreted hydrolase-like protein  YP_865514  decreased coverage  3.6978e-05  normal  0.453344  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_1642  CDS  NC_008576  2039130  2039570  441  cache type 2 domain-containing protein  YP_865557  decreased coverage  1.55098e-05  normal  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_1679  CDS  NC_008576  2081806  2082402  597  alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen  YP_865594  decreased coverage  9.12129e-06  normal  0.728199  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_1728  CDS  NC_008576  2133115  2135067  1953  citrate transporter  YP_865642  decreased coverage  3.73143e-05  normal  0.108041  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_1731  CDS  NC_008576  2138376  2139182  807  ModE family transcriptional regulator  YP_865645  decreased coverage  8.16631e-08  normal  0.0463603  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_1735  CDS  NC_008576  2144069  2146288  2220  cyclic nucleotide-binding protein  YP_865649  normal  decreased coverage  0.00308523  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_1736  CDS  NC_008576  2146631  2146819  189  hypothetical protein  YP_865650  normal  decreased coverage  0.00537203  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_1737  CDS  NC_008576  2146856  2147911  1056  cobalamin synthesis protein, P47K  YP_865651  normal  decreased coverage  0.00683166  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_1740  CDS  NC_008576  2150656  2151258  603  DNA replication and repair protein RecR  YP_865654  decreased coverage  7.62461e-07  normal  0.0361777  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_1754  CDS  NC_008576  2165761  2167806  2046  membrane-bound proton-translocating pyrophosphatase  YP_865668  decreased coverage  7.19333e-06  normal  0.172901  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_1775  CDS  NC_008576  2193807  2194010  204  SSU ribosomal protein S21P  YP_865689  unclonable  6.00029e-12  decreased coverage  9.32106e-05  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_1776  CDS  NC_008576  2194201  2197155  2955  ribonuclease E  YP_865690  unclonable  9.43072e-05  decreased coverage  0.00020345  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_1777  CDS  NC_008576  2197533  2198519  987  ribosomal large subunit pseudouridine synthase C  YP_865691  hitchhiker  0.00553261  decreased coverage  0.000101871  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_1778  CDS  NC_008576  2198516  2199184  669  HAD family hydrolase  YP_865692  normal  0.0979226  decreased coverage  8.22361e-05  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_1794  CDS  NC_008576  2217361  2219130  1770  periplasmic sensor signal transduction histidine kinase  YP_865708  decreased coverage  1.32214e-05  normal  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_1817  CDS  NC_008576  2249483  2252737  3255  acriflavin resistance protein  YP_865731  decreased coverage  0.00322061  normal  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_1818  CDS  NC_008576  2252730  2253788  1059  RND family efflux transporter MFP subunit  YP_865732  decreased coverage  2.24471e-08  normal  0.900766  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_1836  CDS  NC_008576  2279491  2279904  414  hypothetical protein  YP_865750  decreased coverage  0.00093495  normal  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_1849  CDS  NC_008576  2295599  2296138  540  outer membrane chaperone Skp (OmpH)  YP_865763  decreased coverage  1.1443e-09  normal  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_1855  CDS  NC_008576  2300694  2301068  375  thioredoxin  YP_865769  decreased coverage  3.64045e-10  normal  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Page 1 of 2    << first  < prev  1  2    next >  last >>