94 decreased-coverage genes were found for selected organism/s



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Locus tag

Gene type

Replicon accession

From

To

Strand

Gene Length

Product

Protein accession

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Organism name

Kingdom

Coverage Plot

PanDaTox homologs

Experimental validation
VEA_000033  CDS  NC_013457  35029  38085  3057  exonuclease SbcC  YP_003287185  decreased coverage  0.00466596  n/a    Vibrio sp. Ex25  Bacteria 
 
 
-
 
VEA_000034  CDS  NC_013457  38176  39090  915  transcriptional regulator LysR family protein  YP_003287186  decreased coverage  0.000511263  n/a    Vibrio sp. Ex25  Bacteria 
 
 
-
 
VEA_000055  CDS  NC_013457  61459  63090  1632  methyl-accepting chemotaxis protein  YP_003287208  decreased coverage  0.000458726  n/a    Vibrio sp. Ex25  Bacteria 
 
 
-
 
VEA_000129  CDS  NC_013457  145000  145662  663  transcriptional regulator  YP_003287282  decreased coverage  1.10935e-07  n/a    Vibrio sp. Ex25  Bacteria 
 
 
-
 
VEA_000158  CDS  NC_013457  169200  171281  2082  TonB-dependent heme and hemoglobin receptor HutA  YP_003287311  decreased coverage  0.00497898  n/a    Vibrio sp. Ex25  Bacteria 
 
 
-
 
VEA_000188  CDS  NC_013457  201641  202660  1020  membrane protein TerC  YP_003287341  decreased coverage  1.21417e-05  n/a    Vibrio sp. Ex25  Bacteria 
 
 
-
 
VEA_000189  CDS  NC_013457  203287  205023  1737  5'-nucleotidase  YP_003287342  decreased coverage  3.10598e-05  n/a    Vibrio sp. Ex25  Bacteria 
 
 
-
 
VEA_000394  CDS  NC_013457  446559  448262  1704  acetolactate synthase catabolic  YP_003287547  decreased coverage  0.000407166  n/a    Vibrio sp. Ex25  Bacteria 
 
 
-
 
VEA_000498  CDS  NC_013457  597032  598084  1053  2-keto-3-deoxy-D-arabino-heptulosonate-7- phosphate synthase I alpha  YP_003287649  decreased coverage  2.7124e-05  n/a    Vibrio sp. Ex25  Bacteria 
 
 
-
 
VEA_000499  CDS  NC_013457  598546  599538  993  outer membrane protein A precursor  YP_003287650  decreased coverage  4.10155e-08  n/a    Vibrio sp. Ex25  Bacteria 
 
 
-
 
VEA_000579  CDS  NC_013457  676529  677242  714  putative DNA-binding response regulator  YP_003287730  decreased coverage  0.00151616  n/a    Vibrio sp. Ex25  Bacteria 
 
 
-
 
VEA_000595  CDS  NC_013457  690100  691269  1170  D-alanyl-D-alanine carboxypeptidase  YP_003287746  decreased coverage  8.67195e-08  n/a    Vibrio sp. Ex25  Bacteria 
 
 
-
 
VEA_000711  CDS  NC_013457  826582  827652  1071  enoyl-[acyl-carrier-protein] reductase (FMN)  YP_003287862  decreased coverage  0.00491947  n/a    Vibrio sp. Ex25  Bacteria 
 
 
-
 
VEA_000755  CDS  NC_013457  868443  869423  981  outer membrane protein A precursor  YP_003287906  decreased coverage  4.75354e-07  n/a    Vibrio sp. Ex25  Bacteria 
 
 
-
 
VEA_000826  CDS  NC_013457  951231  951659  429  hypothetical protein  YP_003287977  decreased coverage  6.699e-05  n/a    Vibrio sp. Ex25  Bacteria 
 
 
-
 
VEA_000827  CDS  NC_013457  951726  952451  726  zn-dependent hydrolase  YP_003287978  decreased coverage  0.000173508  n/a    Vibrio sp. Ex25  Bacteria 
 
 
-
 
VEA_000828  CDS  NC_013457  952763  954685  1923  biosynthetic arginine decarboxylase  YP_003287979  decreased coverage  0.00030199  n/a    Vibrio sp. Ex25  Bacteria 
 
 
-
 
VEA_000829  CDS  NC_013457  954687  955607  921  agmatinase  YP_003287980  decreased coverage  0.000138178  n/a    Vibrio sp. Ex25  Bacteria 
 
 
-
 
VEA_000851  CDS  NC_013457  977105  977770  666  probable transcriptional regulator SyrB  YP_003288002  decreased coverage  0.00675785  n/a    Vibrio sp. Ex25  Bacteria 
 
 
-
 
VEA_000940  CDS  NC_013457  1071614  1072954  1341  Na+ driven multidrug efflux pump  YP_003288090  decreased coverage  0.000926882  n/a    Vibrio sp. Ex25  Bacteria 
 
 
-
 
VEA_001077  CDS  NC_013457  1225154  1226908  1755  hypothetical protein  YP_003288227  decreased coverage  0.00935089  n/a    Vibrio sp. Ex25  Bacteria 
 
 
-
 
VEA_001120  CDS  NC_013457  1286031  1286924  894  hypothetical protein  YP_003288270  decreased coverage  2.54312e-07  n/a    Vibrio sp. Ex25  Bacteria 
 
 
-
 
VEA_001128  CDS  NC_013457  1294145  1295125  981  rhodanese domain protein  YP_003288278  decreased coverage  3.31641e-08  n/a    Vibrio sp. Ex25  Bacteria 
 
 
-
 
VEA_001333  CDS  NC_013457  1518995  1519900  906  hypothetical protein  YP_003288481  decreased coverage  1.32961e-05  n/a    Vibrio sp. Ex25  Bacteria 
 
 
-
 
VEA_001349  CDS  NC_013457  1532713  1533174  462  transcriptional regulator LuxT  YP_003288497  decreased coverage  6.49622e-09  n/a    Vibrio sp. Ex25  Bacteria 
 
 
-
 
VEA_001350  CDS  NC_013457  1533366  1534148  783  ABC-type hemin transport system ATPase component  YP_003288498  decreased coverage  1.43522e-06  n/a    Vibrio sp. Ex25  Bacteria 
 
 
-
 
VEA_001373  CDS  NC_013457  1554478  1554708  231  PAS factor  YP_003288521  decreased coverage  1.35074e-09  n/a    Vibrio sp. Ex25  Bacteria 
 
 
-
 
VEA_001374  CDS  NC_013457  1554791  1555168  378  4-carboxymuconolactone decarboxylase  YP_003288522  decreased coverage  2.10016e-09  n/a    Vibrio sp. Ex25  Bacteria 
 
 
-
 
VEA_001431  CDS  NC_013457  1623262  1624455  1194  multidrug resistance protein D  YP_003288579  decreased coverage  1.14311e-06  n/a    Vibrio sp. Ex25  Bacteria 
 
 
-
 
VEA_001506  CDS  NC_013457  1698509  1699801  1293  ATP-dependent RNA helicase  YP_003288654  decreased coverage  0.000291883  n/a    Vibrio sp. Ex25  Bacteria 
 
 
-
 
VEA_001610  CDS  NC_013456  17  325  309  hypothetical protein  YP_003284238  decreased coverage  1.83596e-06  n/a    Vibrio sp. Ex25  Bacteria 
 
 
-
 
VEA_001645  CDS  NC_013456  39777  41189  1413  pyruvate kinase  YP_003284273  decreased coverage  4.13201e-05  n/a    Vibrio sp. Ex25  Bacteria 
 
 
-
 
VEA_001646  CDS  NC_013456  41389  42033  645  transcriptional regulator LuxZ  YP_003284274  decreased coverage  7.06033e-06  n/a    Vibrio sp. Ex25  Bacteria 
 
 
-
 
VEA_001752  CDS  NC_013456  138931  139173  243  hypothetical protein  YP_003284380  decreased coverage  8.92974e-06  n/a    Vibrio sp. Ex25  Bacteria 
 
 
-
 
VEA_001764  CDS  NC_013456  148758  150746  1989  nucleoside-diphosphate sugar epimerase/dehydratase  YP_003284392  decreased coverage  3.53165e-05  n/a    Vibrio sp. Ex25  Bacteria 
 
 
-
 
VEA_001903  CDS  NC_013456  293322  295151  1830  GTP-binding protein TypA/BipA  YP_003284531  decreased coverage  0.00233609  n/a    Vibrio sp. Ex25  Bacteria 
 
 
-
 
VEA_002107  CDS  NC_013456  529066  531594  2529  adenylate cyclase  YP_003284735  decreased coverage  0.000191458  n/a    Vibrio sp. Ex25  Bacteria 
 
 
-
 
VEA_002193  CDS  NC_013456  635616  635912  297  NA-binding protein Fis  YP_003284821  decreased coverage  0.000234513  n/a    Vibrio sp. Ex25  Bacteria 
 
 
-
 
VEA_002194  CDS  NC_013456  635936  636799  864  tRNA dihydrouridine synthase B  YP_003284822  decreased coverage  0.000238553  n/a    Vibrio sp. Ex25  Bacteria 
 
 
-
 
VEA_002195  CDS  NC_013456  637044  637931  888  ribosomal protein L11 methyltransferase  YP_003284823  decreased coverage  0.00271176  n/a    Vibrio sp. Ex25  Bacteria 
 
 
-
 
VEA_002262  CDS  NC_013456  713680  714660  981  HflC protein  YP_003284890  decreased coverage  0.00114995  n/a    Vibrio sp. Ex25  Bacteria 
 
 
-
 
VEA_002328  CDS  NC_013456  784126  785226  1101  3-dehydroquinate synthase  YP_003284955  decreased coverage  2.21553e-06  n/a    Vibrio sp. Ex25  Bacteria 
 
 
-
 
VEA_002429  CDS  NC_013456  901491  902591  1101  hypothetical protein  YP_003285056  decreased coverage  1.55201e-05  n/a    Vibrio sp. Ex25  Bacteria 
 
 
-
 
VEA_002483  CDS  NC_013456  964135  964713  579  hypothetical protein  YP_003285110  decreased coverage  2.88403e-07  n/a    Vibrio sp. Ex25  Bacteria 
 
 
-
 
VEA_002493  CDS  NC_013456  973799  974764  966  sigma factor RpoE negative regulatory protein RseB precursor  YP_003285120  decreased coverage  1.1568e-06  n/a    Vibrio sp. Ex25  Bacteria 
 
 
-
 
VEA_002494  CDS  NC_013456  974761  975231  471  sigma factor RpoE regulatory protein RseC  YP_003285121  decreased coverage  2.04046e-07  n/a    Vibrio sp. Ex25  Bacteria 
 
 
-
 
VEA_002596  CDS  NC_013456  1102531  1103718  1188  tyrosyl-tRNA synthetase  YP_003285223  decreased coverage  3.4927e-06  n/a    Vibrio sp. Ex25  Bacteria 
 
 
-
 
VEA_002628  CDS  NC_013456  1137285  1138568  1284  nucleoside permease NupC  YP_003285255  decreased coverage  3.61858e-05  n/a    Vibrio sp. Ex25  Bacteria 
 
 
-
 
VEA_002707  CDS  NC_013456  1235354  1236640  1287  Na(+)-translocating NADH-quinone reductase subunit A  YP_003285334  decreased coverage  2.07238e-06  n/a    Vibrio sp. Ex25  Bacteria 
 
 
-
 
VEA_002708  CDS  NC_013456  1236646  1237890  1245  Na(+)-translocating NADH-quinone reductase subunit B  YP_003285335  decreased coverage  2.2376e-05  n/a    Vibrio sp. Ex25  Bacteria 
 
 
-
 
VEA_002747  CDS  NC_013456  1274818  1275663  846  translation elongation factor Ts  YP_003285374  decreased coverage  9.73884e-07  n/a    Vibrio sp. Ex25  Bacteria 
 
 
-
 
VEA_002748  CDS  NC_013456  1275811  1276536  726  uridylate kinase  YP_003285375  decreased coverage  5.03391e-07  n/a    Vibrio sp. Ex25  Bacteria 
 
 
-
 
VEA_002831  CDS  NC_013456  1360260  1361147  888  flagellar synthesis regulator FleN  YP_003285458  decreased coverage  5.17997e-07  n/a    Vibrio sp. Ex25  Bacteria 
 
 
-
 
VEA_002832  CDS  NC_013456  1361140  1361874  735  RNA polymerase sigma factor for flagellar operon  YP_003285459  decreased coverage  4.15282e-07  n/a    Vibrio sp. Ex25  Bacteria 
 
 
-
 
VEA_002833  CDS  NC_013456  1361908  1362288  381  chemotaxis regulator CheY  YP_003285460  decreased coverage  2.39201e-06  n/a    Vibrio sp. Ex25  Bacteria 
 
 
-
 
VEA_002885  CDS  NC_013456  1416394  1418499  2106  DNA polymerase III subunits gamma and tau  YP_003285512  decreased coverage  0.00493528  n/a    Vibrio sp. Ex25  Bacteria 
 
 
-
 
VEA_003067  CDS  NC_013456  1628481  1630937  2457  hypothetical protein  YP_003285692  decreased coverage  0.000138455  n/a    Vibrio sp. Ex25  Bacteria 
 
 
-
 
VEA_003069  CDS  NC_013456  1631889  1632089  201  hypothetical protein  YP_003285694  decreased coverage  1.40328e-07  n/a    Vibrio sp. Ex25  Bacteria 
 
 
-
 
VEA_003080  CDS  NC_013456  1643509  1643661  153  hypothetical protein  YP_003285705  decreased coverage  9.36136e-08  n/a    Vibrio sp. Ex25  Bacteria 
 
 
-
 
VEA_003111  CDS  NC_013456  1681431  1684151  2721  DNA gyrase subunit A  YP_003285736  decreased coverage  0.00046231  n/a    Vibrio sp. Ex25  Bacteria 
 
 
-
 
VEA_003356  CDS  NC_013456  1914386  1915201  816  multidrug resistance efflux pump  YP_003285981  decreased coverage  0.000276837  n/a    Vibrio sp. Ex25  Bacteria 
 
 
-
 
VEA_003401  CDS  NC_013456  1959898  1960251  354  hypothetical protein  YP_003286026  decreased coverage  2.84049e-06  n/a    Vibrio sp. Ex25  Bacteria 
 
 
-
 
VEA_003402  CDS  NC_013456  1960419  1961033  615  outer membrane protein  YP_003286027  decreased coverage  5.00846e-06  n/a    Vibrio sp. Ex25  Bacteria 
 
 
-
 
VEA_003408  CDS  NC_013456  1985945  1987138  1194  hypothetical protein  YP_003286033  decreased coverage  2.70562e-06  n/a    Vibrio sp. Ex25  Bacteria 
 
 
-
 
VEA_003409  CDS  NC_013456  1987301  1988704  1404  methyl-accepting chemotaxis protein  YP_003286034  decreased coverage  5.0033e-06  n/a    Vibrio sp. Ex25  Bacteria 
 
 
-
 
VEA_003410  CDS  NC_013456  1988888  1989067  180  acylphosphate phosphohydrolase  YP_003286035  decreased coverage  1.2499e-07  n/a    Vibrio sp. Ex25  Bacteria 
 
 
-
 
VEA_003411  CDS  NC_013456  1989071  1989400  330  tRNA 2-thiouridine synthesizing protein E  YP_003286036  decreased coverage  1.75074e-07  n/a    Vibrio sp. Ex25  Bacteria 
 
 
-
 
VEA_003412  CDS  NC_013456  1989809  1990183  375  hypothetical protein  YP_003286037  decreased coverage  1.78508e-07  n/a    Vibrio sp. Ex25  Bacteria 
 
 
-
 
VEA_003429  CDS  NC_013456  2009497  2009970  474  free methionine-(R)-sulfoxide reductase fRMsr  YP_003286054  decreased coverage  3.33189e-07  n/a    Vibrio sp. Ex25  Bacteria 
 
 
-
 
VEA_003430  CDS  NC_013456  2010068  2010694  627  ProQ protein  YP_003286055  decreased coverage  4.70709e-07  n/a    Vibrio sp. Ex25  Bacteria 
 
 
-
 
VEA_003483  CDS  NC_013456  2064662  2065432  771  spermidine putrescine ABC transporter permease component PotC  YP_003286108  decreased coverage  5.53951e-07  n/a    Vibrio sp. Ex25  Bacteria 
 
 
-
 
VEA_003726  CDS  NC_013456  2338795  2341830  3036  Fe-S oxidoreductase  YP_003286351  decreased coverage  0.000740961  n/a    Vibrio sp. Ex25  Bacteria 
 
 
-
 
VEA_003748  CDS  NC_013456  2368612  2369706  1095  phosphoserine aminotransferase  YP_003286373  decreased coverage  0.000403909  n/a    Vibrio sp. Ex25  Bacteria 
 
 
-
 
VEA_003763  CDS  NC_013456  2383718  2385253  1536  TrkA Potassium channel-family protein  YP_003286388  decreased coverage  4.4665e-06  n/a    Vibrio sp. Ex25  Bacteria 
 
 
-
 
VEA_003822  CDS  NC_013456  2452079  2452984  906  manganese-dependent inorganic pyrophosphatase  YP_003286447  decreased coverage  2.09246e-06  n/a    Vibrio sp. Ex25  Bacteria 
 
 
-
 
VEA_003838  CDS  NC_013456  2468810  2469304  495  peptidyl-prolyl cis-trans isomerase PpiB  YP_003286463  decreased coverage  2.99744e-07  n/a    Vibrio sp. Ex25  Bacteria 
 
 
-
 
VEA_003851  CDS  NC_013456  2481288  2482889  1602  malate Na(+) symporter  YP_003286476  decreased coverage  0.00269434  n/a    Vibrio sp. Ex25  Bacteria 
 
 
-
 
VEA_003866  CDS  NC_013456  2495931  2496800  870  hypothetical protein  YP_003286491  decreased coverage  8.8454e-07  n/a    Vibrio sp. Ex25  Bacteria 
 
 
-
 
VEA_003896  CDS  NC_013456  2529887  2531524  1638  methyl-accepting chemotaxis protein  YP_003286521  decreased coverage  0.000288698  n/a    Vibrio sp. Ex25  Bacteria 
 
 
-
 
VEA_003928  CDS  NC_013456  2563317  2564054  738  tRNA (uridine-5-oxyacetic acid methyl ester) 34 synthase  YP_003286553  decreased coverage  0.000490734  n/a    Vibrio sp. Ex25  Bacteria 
 
 
-
 
VEA_003929  CDS  NC_013456  2564140  2565111  972  tRNA (5-methoxyuridine) 34 synthase  YP_003286554  decreased coverage  0.00210133  n/a    Vibrio sp. Ex25  Bacteria 
 
 
-
 
VEA_003937  CDS  NC_013456  2575651  2576442  792  S-adenosylmethionine-dependent methyltransferase functionally coupled to the MukBEF chromosome partitioning mechanism  YP_003286562  decreased coverage  0.000294838  n/a    Vibrio sp. Ex25  Bacteria 
 
 
-
 
VEA_003950  CDS  NC_013456  2590028  2590276  249  protein YciN  YP_003286575  decreased coverage  8.28356e-05  n/a    Vibrio sp. Ex25  Bacteria 
 
 
-
 
VEA_003951  CDS  NC_013456  2590340  2591620  1281  5-Enolpyruvylshikimate-3-phosphate synthase  YP_003286576  decreased coverage  0.000960986  n/a    Vibrio sp. Ex25  Bacteria 
 
 
-
 
VEA_003954  CDS  NC_013456  2593131  2593832  702  arginine-tRNA-protein transferase  YP_003286579  decreased coverage  0.000149764  n/a    Vibrio sp. Ex25  Bacteria 
 
 
-
 
VEA_003955  CDS  NC_013456  2593914  2594132  219  translation initiation factor 1  YP_003286580  decreased coverage  3.63825e-05  n/a    Vibrio sp. Ex25  Bacteria 
 
 
-
 
VEA_004262  CDS  NC_013456  2941129  2941599  471  6,7-dimethyl-8-ribityllumazine synthase  YP_003286885  decreased coverage  0.000106153  n/a    Vibrio sp. Ex25  Bacteria 
 
 
-
 
VEA_004263  CDS  NC_013456  2941769  2942878  1110  3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II  YP_003286886  decreased coverage  9.43386e-05  n/a    Vibrio sp. Ex25  Bacteria 
 
 
-
 
VEA_004264  CDS  NC_013456  2943052  2943705  654  riboflavin synthase alpha chain  YP_003286887  decreased coverage  0.000121594  n/a    Vibrio sp. Ex25  Bacteria 
 
 
-
 
VEA_004265  CDS  NC_013456  2943714  2944841  1128  diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase  YP_003286888  decreased coverage  0.000582374  n/a    Vibrio sp. Ex25  Bacteria 
 
 
-
 
VEA_004447  CDS  NC_013456  3157386  3158819  1434  sodium/alanine symporter  YP_003287070  decreased coverage  0.00130712  n/a    Vibrio sp. Ex25  Bacteria 
 
 
-
 
VEA_004461  CDS  NC_013456  3171147  3171863  717  aerobic respiration control protein ArcA  YP_003287084  decreased coverage  1.05121e-06  n/a    Vibrio sp. Ex25  Bacteria 
 
 
-
 
VEA_004504  CDS  NC_013456  3229046  3229711  666  putative hemolysin  YP_003287127  decreased coverage  4.07403e-07  n/a    Vibrio sp. Ex25  Bacteria 
 
 
-
 
VEA_rna052  rRNA  NC_013456  621139  622684  1546  16S ribosomal RNA    decreased coverage  1.00812e-05  n/a    Vibrio sp. Ex25  Bacteria 
 
 
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