97 decreased-coverage genes were found for selected organism/s



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Locus tag

Gene type

Replicon accession

From

To

Strand

Gene Length

Product

Protein accession

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Organism name

Kingdom

Coverage Plot

PanDaTox homologs

Experimental validation
TRQ2_0059  CDS  NC_010483  54670  55335  666  glutaredoxin-like domain-containing protein  YP_001738104  decreased coverage  8.82966e-05  n/a    Thermotoga sp. RQ2  Bacteria 
 
 
-
 
TRQ2_0105  CDS  NC_010483  98268  99245  978  phenylalanyl-tRNA synthetase subunit alpha  YP_001738150  decreased coverage  0.00194078  n/a    Thermotoga sp. RQ2  Bacteria 
 
 
-
 
TRQ2_0106  CDS  NC_010483  99394  100581  1188  iron-containing alcohol dehydrogenase  YP_001738151  decreased coverage  0.00140728  n/a    Thermotoga sp. RQ2  Bacteria 
 
 
-
 
TRQ2_0187  CDS  NC_010483  180647  182569  1923  threonyl-tRNA synthetase  YP_001738230  decreased coverage  0.00194489  n/a    Thermotoga sp. RQ2  Bacteria 
 
 
-
 
TRQ2_0263  CDS  NC_010483  251669  252322  654  serine O-acetyltransferase  YP_001738305  decreased coverage  0.00204629  n/a    Thermotoga sp. RQ2  Bacteria 
 
 
-
 
TRQ2_0273  CDS  NC_010483  258584  259114  531  XRE family transcriptional regulator  YP_001738315  decreased coverage  1.44131e-05  n/a    Thermotoga sp. RQ2  Bacteria 
 
 
-
 
TRQ2_0281  CDS  NC_010483  264475  264957  483  2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase  YP_001738323  decreased coverage  8.6264e-06  n/a    Thermotoga sp. RQ2  Bacteria 
 
 
-
 
TRQ2_0283  CDS  NC_010483  265546  266391  846  NAD+ synthetase  YP_001738325  decreased coverage  3.82877e-05  n/a    Thermotoga sp. RQ2  Bacteria 
 
 
-
 
TRQ2_0368  CDS  NC_010483  354862  356526  1665  peptidase M23  YP_001738407  decreased coverage  0.000678995  n/a    Thermotoga sp. RQ2  Bacteria 
 
 
-
 
TRQ2_0369  CDS  NC_010483  356528  356941  414  BadM/Rrf2 family transcriptional regulator  YP_001738408  decreased coverage  0.00170457  n/a    Thermotoga sp. RQ2  Bacteria 
 
 
-
 
TRQ2_0370  CDS  NC_010483  356960  357154  195  hypothetical protein  YP_001738409  decreased coverage  0.000814482  n/a    Thermotoga sp. RQ2  Bacteria 
 
 
-
 
TRQ2_0371  CDS  NC_010483  357158  357826  669  sugar fermentation stimulation protein  YP_001738410  decreased coverage  0.00357575  n/a    Thermotoga sp. RQ2  Bacteria 
 
 
-
 
TRQ2_0376  CDS  NC_010483  360798  361853  1056  magnesium and cobalt transport protein CorA  YP_001738415  decreased coverage  0.00229946  n/a    Thermotoga sp. RQ2  Bacteria 
 
 
-
 
TRQ2_0415  CDS  NC_010483  404780  406171  1392  ATP-dependent protease ATP-binding subunit HslU  YP_001738454  decreased coverage  0.00145685  n/a    Thermotoga sp. RQ2  Bacteria 
 
 
-
 
TRQ2_0416  CDS  NC_010483  406183  406713  531  ATP-dependent protease peptidase subunit  YP_001738455  decreased coverage  0.00178551  n/a    Thermotoga sp. RQ2  Bacteria 
 
 
-
 
TRQ2_0417  CDS  NC_010483  406795  407871  1077  tRNA-specific 2-thiouridylase MnmA  YP_001738456  decreased coverage  0.000611049  n/a    Thermotoga sp. RQ2  Bacteria 
 
 
-
 
TRQ2_0426  CDS  NC_010483  415416  415997  582  phage SPO1 DNA polymerase-related protein  YP_001738465  decreased coverage  6.29945e-05  n/a    Thermotoga sp. RQ2  Bacteria 
 
 
-
 
TRQ2_0427  CDS  NC_010483  415999  416517  519  MarR family transcriptional regulator  YP_001738466  decreased coverage  5.75669e-05  n/a    Thermotoga sp. RQ2  Bacteria 
 
 
-
 
TRQ2_0428  CDS  NC_010483  416514  417443  930  NAD-dependent epimerase/dehydratase  YP_001738467  decreased coverage  0.000231351  n/a    Thermotoga sp. RQ2  Bacteria 
 
 
-
 
TRQ2_0429  CDS  NC_010483  417415  419214  1800  recombination factor protein RarA/unknown domain fusion protein  YP_001738468  decreased coverage  0.000753896  n/a    Thermotoga sp. RQ2  Bacteria 
 
 
-
 
TRQ2_0497  CDS  NC_010483  492679  494088  1410  6-phosphogluconate dehydrogenase  YP_001738536  decreased coverage  0.00911592  n/a    Thermotoga sp. RQ2  Bacteria 
 
 
-
 
TRQ2_0511  CDS  NC_010483  512179  513276  1098  Pectate lyase/Amb allergen  YP_001738550  decreased coverage  7.97817e-05  n/a    Thermotoga sp. RQ2  Bacteria 
 
 
-
 
TRQ2_0512  CDS  NC_010483  513529  514800  1272  extracellular solute-binding protein  YP_001738551  decreased coverage  0.00024476  n/a    Thermotoga sp. RQ2  Bacteria 
 
 
-
 
TRQ2_0520  CDS  NC_010483  524081  524971  891  auxin efflux carrier  YP_001738559  decreased coverage  0.00692662  n/a    Thermotoga sp. RQ2  Bacteria 
 
 
-
 
TRQ2_0544  CDS  NC_010483  546387  547718  1332  FAD-dependent pyridine nucleotide-disulphide oxidoreductase  YP_001738581  decreased coverage  0.000216248  n/a    Thermotoga sp. RQ2  Bacteria 
 
 
-
 
TRQ2_0564  CDS  NC_010483  569586  571568  1983  methyl-accepting chemotaxis sensory transducer with Cache sensor  YP_001738601  decreased coverage  0.0020921  n/a    Thermotoga sp. RQ2  Bacteria 
 
 
-
 
TRQ2_0593  CDS  NC_010483  599569  600810  1242  major facilitator transporter  YP_001738629  decreased coverage  0.00370301  n/a    Thermotoga sp. RQ2  Bacteria 
 
 
-
 
TRQ2_0594  CDS  NC_010483  601006  601506  501  hypothetical protein  YP_001738630  decreased coverage  8.44935e-05  n/a    Thermotoga sp. RQ2  Bacteria 
 
 
-
 
TRQ2_0605  CDS  NC_010483  610868  611794  927  DNA methylase N-4/N-6 domain-containing protein  YP_001738641  decreased coverage  0.000183696  n/a    Thermotoga sp. RQ2  Bacteria 
 
 
-
 
TRQ2_0611  CDS  NC_010483  616398  617408  1011  TRAP dicarboxylate transporter, DctP subunit  YP_001738647  decreased coverage  6.92559e-05  n/a    Thermotoga sp. RQ2  Bacteria 
 
 
-
 
TRQ2_0642  CDS  NC_010483  650881  651651  771  DeoR family transcriptional regulator  YP_001738678  decreased coverage  0.000291189  n/a    Thermotoga sp. RQ2  Bacteria 
 
 
-
 
TRQ2_0646  CDS  NC_010483  655009  656265  1257  3-isopropylmalate dehydratase large subunit  YP_001738682  decreased coverage  0.00455068  n/a    Thermotoga sp. RQ2  Bacteria 
 
 
-
 
TRQ2_0797  CDS  NC_010483  822251  822799  549  hypothetical protein  YP_001738832  decreased coverage  7.98674e-06  n/a    Thermotoga sp. RQ2  Bacteria 
 
 
-
 
TRQ2_0803  CDS  NC_010483  827346  828329  984  putative DNA-binding/iron metalloprotein/AP endonuclease  YP_001738838  decreased coverage  6.42804e-05  n/a    Thermotoga sp. RQ2  Bacteria 
 
 
-
 
TRQ2_0804  CDS  NC_010483  828326  828553  228  FmdB family regulatory protein  YP_001738839  decreased coverage  2.63979e-06  n/a    Thermotoga sp. RQ2  Bacteria 
 
 
-
 
TRQ2_0853  CDS  NC_010483  879077  880276  1200  type II secretion system protein  YP_001738888  decreased coverage  0.000781273  n/a    Thermotoga sp. RQ2  Bacteria 
 
 
-
 
TRQ2_0896  CDS  NC_010483  929939  930403  465  FeoA family protein  YP_001738931  decreased coverage  6.98283e-06  n/a    Thermotoga sp. RQ2  Bacteria 
 
 
-
 
TRQ2_0897  CDS  NC_010483  930504  931289  786  hypothetical protein  YP_001738932  decreased coverage  1.69458e-05  n/a    Thermotoga sp. RQ2  Bacteria 
 
 
-
 
TRQ2_0898    NC_010483  931354  931593  240      decreased coverage  2.87904e-06  n/a    Thermotoga sp. RQ2  Bacteria 
 
 
-
 
TRQ2_0899  CDS  NC_010483  931578  932795  1218  IS605 family transposase OrfB  YP_001738933  decreased coverage  0.000107806  n/a    Thermotoga sp. RQ2  Bacteria 
 
 
-
 
TRQ2_0900  CDS  NC_010483  932933  933151  219  hypothetical protein  YP_001738934  decreased coverage  4.13379e-06  n/a    Thermotoga sp. RQ2  Bacteria 
 
 
-
 
TRQ2_0901  CDS  NC_010483  933209  933757  549  hypothetical protein  YP_001738935  decreased coverage  1.52768e-05  n/a    Thermotoga sp. RQ2  Bacteria 
 
 
-
 
TRQ2_0954  CDS  NC_010483  990103  990780  678  deoxyribonuclease V  YP_001738988  decreased coverage  0.000171059  n/a    Thermotoga sp. RQ2  Bacteria 
 
 
-
 
TRQ2_0955  CDS  NC_010483  990852  991427  576  hypothetical protein  YP_001738989  decreased coverage  0.000127894  n/a    Thermotoga sp. RQ2  Bacteria 
 
 
-
 
TRQ2_0956  CDS  NC_010483  991415  991954  540  hypothetical protein  YP_001738990  decreased coverage  1.47009e-05  n/a    Thermotoga sp. RQ2  Bacteria 
 
 
-
 
TRQ2_0969  CDS  NC_010483  1006135  1007475  1341  beta-galactosidase  YP_001739002  decreased coverage  0.00738034  n/a    Thermotoga sp. RQ2  Bacteria 
 
 
-
 
TRQ2_0980  CDS  NC_010483  1022120  1023262  1143  hypothetical protein  YP_001739013  decreased coverage  8.29272e-05  n/a    Thermotoga sp. RQ2  Bacteria 
 
 
-
 
TRQ2_0981  CDS  NC_010483  1023273  1023926  654  hypothetical protein  YP_001739014  decreased coverage  0.000197255  n/a    Thermotoga sp. RQ2  Bacteria 
 
 
-
 
TRQ2_0984  CDS  NC_010483  1027213  1028391  1179  extracellular solute-binding protein  YP_001739017  decreased coverage  0.000118485  n/a    Thermotoga sp. RQ2  Bacteria 
 
 
-
 
TRQ2_1039  CDS  NC_010483  1083817  1083999  183  hypothetical protein  YP_001739069  decreased coverage  4.13379e-06  n/a    Thermotoga sp. RQ2  Bacteria 
 
 
-
 
TRQ2_1040  CDS  NC_010483  1084019  1085176  1158  acetylornithine aminotransferase  YP_001739070  decreased coverage  0.000111021  n/a    Thermotoga sp. RQ2  Bacteria 
 
 
-
 
TRQ2_1097  CDS  NC_010483  1141324  1142136  813  3-methyl-2-oxobutanoate hydroxymethyltransferase  YP_001739126  decreased coverage  2.43588e-05  n/a    Thermotoga sp. RQ2  Bacteria 
 
 
-
 
TRQ2_1127    NC_010483  1168174  1168643  470      decreased coverage  6.98283e-06  n/a    Thermotoga sp. RQ2  Bacteria 
 
 
-
 
TRQ2_1150  CDS  NC_010483  1190350  1190565  216  50S ribosomal protein L31  YP_001739178  decreased coverage  4.42402e-06  n/a    Thermotoga sp. RQ2  Bacteria 
 
 
-
 
TRQ2_1151  CDS  NC_010483  1190687  1190887  201  cold-shock DNA-binding domain-containing protein  YP_001739179  decreased coverage  4.68526e-06  n/a    Thermotoga sp. RQ2  Bacteria 
 
 
-
 
TRQ2_1152  CDS  NC_010483  1191034  1192731  1698  metal dependent phosphohydrolase  YP_001739180  decreased coverage  0.000790776  n/a    Thermotoga sp. RQ2  Bacteria 
 
 
-
 
TRQ2_1153  CDS  NC_010483  1192805  1193020  216  hypothetical protein  YP_001739181  decreased coverage  2.37782e-06  n/a    Thermotoga sp. RQ2  Bacteria 
 
 
-
 
TRQ2_1166  CDS  NC_010483  1204317  1205096  780  ABC transporter related  YP_001739193  decreased coverage  0.00292656  n/a    Thermotoga sp. RQ2  Bacteria 
 
 
-
 
TRQ2_1171  CDS  NC_010483  1207683  1208870  1188  S-adenosylmethionine synthetase  YP_001739198  decreased coverage  9.72386e-05  n/a    Thermotoga sp. RQ2  Bacteria 
 
 
-
 
TRQ2_1172  CDS  NC_010483  1208886  1209176  291  30S ribosomal protein S20  YP_001739199  decreased coverage  3.00859e-05  n/a    Thermotoga sp. RQ2  Bacteria 
 
 
-
 
TRQ2_1190  CDS  NC_010483  1226581  1227003  423  BadM/Rrf2 family transcriptional regulator  YP_001739217  decreased coverage  0.000219996  n/a    Thermotoga sp. RQ2  Bacteria 
 
 
-
 
TRQ2_1191  CDS  NC_010483  1227031  1227900  870  1,4-dihydroxy-2-naphthoate octaprenyltransferase  YP_001739218  decreased coverage  1.8139e-05  n/a    Thermotoga sp. RQ2  Bacteria 
 
 
-
 
TRQ2_1207  CDS  NC_010483  1239582  1240592  1011  rod shape-determining protein MreB  YP_001739234  decreased coverage  3.44928e-05  n/a    Thermotoga sp. RQ2  Bacteria 
 
 
-
 
TRQ2_1208  CDS  NC_010483  1240725  1241345  621  Holliday junction resolvase YqgF  YP_001739235  decreased coverage  0.000404516  n/a    Thermotoga sp. RQ2  Bacteria 
 
 
-
 
TRQ2_1228  CDS  NC_010483  1258862  1260163  1302  signal recognition particle protein  YP_001739255  decreased coverage  0.000301134  n/a    Thermotoga sp. RQ2  Bacteria 
 
 
-
 
TRQ2_1321  CDS  NC_010483  1351503  1353203  1701  methyl-accepting chemotaxis sensory transducer  YP_001739348  decreased coverage  0.00082247  n/a    Thermotoga sp. RQ2  Bacteria 
 
 
-
 
TRQ2_1343  CDS  NC_010483  1375085  1376308  1224  RpoD family RNA polymerase sigma factor  YP_001739370  decreased coverage  0.000691641  n/a    Thermotoga sp. RQ2  Bacteria 
 
 
-
 
TRQ2_1364  CDS  NC_010483  1389420  1390703  1284  transcription termination factor Rho  YP_001739391  decreased coverage  0.000237844  n/a    Thermotoga sp. RQ2  Bacteria 
 
 
-
 
TRQ2_1408  CDS  NC_010483  1417904  1418296  393  hypothetical protein  YP_001739435  decreased coverage  0.000243439  n/a    Thermotoga sp. RQ2  Bacteria 
 
 
-
 
TRQ2_1409  CDS  NC_010483  1418293  1418703  411  ferric uptake regulator family protein  YP_001739436  decreased coverage  0.000310643  n/a    Thermotoga sp. RQ2  Bacteria 
 
 
-
 
TRQ2_1447  CDS  NC_010483  1457538  1458137  600  NUDIX hydrolase  YP_001739474  decreased coverage  0.00273498  n/a    Thermotoga sp. RQ2  Bacteria 
 
 
-
 
TRQ2_1490  CDS  NC_010483  1497543  1498145  603  hypothetical protein  YP_001739517  decreased coverage  0.000902268  n/a    Thermotoga sp. RQ2  Bacteria 
 
 
-
 
TRQ2_1503  CDS  NC_010483  1514020  1515624  1605  hypothetical protein  YP_001739529  decreased coverage  0.000494578  n/a    Thermotoga sp. RQ2  Bacteria 
 
 
-
 
TRQ2_1506  CDS  NC_010483  1516118  1517812  1695  ABC transporter related  YP_001739531  decreased coverage  0.00391095  n/a    Thermotoga sp. RQ2  Bacteria 
 
 
-
 
TRQ2_1548  CDS  NC_010483  1557050  1557517  468  type IV pilin-related protein  YP_001739567  decreased coverage  4.91286e-06  n/a    Thermotoga sp. RQ2  Bacteria 
 
 
-
 
TRQ2_1591  CDS  NC_010483  1603667  1605676  2010  carbohydrate binding module 27  YP_001739610  decreased coverage  0.00319954  n/a    Thermotoga sp. RQ2  Bacteria 
 
 
-
 
TRQ2_1612  CDS  NC_010483  1625998  1626246  249  putative monovalent cation/H+ antiporter subunit F  YP_001739631  decreased coverage  0.000561435  n/a    Thermotoga sp. RQ2  Bacteria 
 
 
-
 
TRQ2_1613  CDS  NC_010483  1626243  1626710  468  putative monovalent cation/H+ antiporter subunit E  YP_001739632  decreased coverage  0.00123614  n/a    Thermotoga sp. RQ2  Bacteria 
 
 
-
 
TRQ2_1619  CDS  NC_010483  1635482  1637383  1902  extracellular solute-binding protein  YP_001739638  decreased coverage  0.00276535  n/a    Thermotoga sp. RQ2  Bacteria 
 
 
-
 
TRQ2_1620  CDS  NC_010483  1637454  1638458  1005  binding-protein-dependent transport systems inner membrane component  YP_001739639  decreased coverage  0.000109875  n/a    Thermotoga sp. RQ2  Bacteria 
 
 
-
 
TRQ2_1676  CDS  NC_010483  1698931  1700043  1113  extracellular ligand-binding receptor  YP_001739694  decreased coverage  0.000661006  n/a    Thermotoga sp. RQ2  Bacteria 
 
 
-
 
TRQ2_1697  CDS  NC_010483  1718939  1719988  1050  SARP family transcriptional regulator  YP_001739714  decreased coverage  0.000546308  n/a    Thermotoga sp. RQ2  Bacteria 
 
 
-
 
TRQ2_1727  CDS  NC_010483  1745265  1746752  1488  TrkH family potassium uptake protein  YP_001739743  decreased coverage  0.000434576  n/a    Thermotoga sp. RQ2  Bacteria 
 
 
-
 
TRQ2_1728  CDS  NC_010483  1746771  1747427  657  TrkA domain-containing protein  YP_001739744  decreased coverage  1.94267e-05  n/a    Thermotoga sp. RQ2  Bacteria 
 
 
-
 
TRQ2_1749  CDS  NC_010483  1768613  1768876  264  stage V sporulation protein S  YP_001739763  decreased coverage  0.0057765  n/a    Thermotoga sp. RQ2  Bacteria 
 
 
-
 
TRQ2_1783  CDS  NC_010483  1797108  1797638  531  integral membrane protein-like protein  YP_001739797  decreased coverage  0.000106195  n/a    Thermotoga sp. RQ2  Bacteria 
 
 
-
 
TRQ2_1784  CDS  NC_010483  1797736  1798497  762  esterase  YP_001739798  decreased coverage  0.000188724  n/a    Thermotoga sp. RQ2  Bacteria 
 
 
-
 
TRQ2_1785  CDS  NC_010483  1798500  1799768  1269  major facilitator transporter  YP_001739799  decreased coverage  0.00132489  n/a    Thermotoga sp. RQ2  Bacteria 
 
 
-
 
TRQ2_1787  CDS  NC_010483  1802986  1804080  1095  hypothetical protein  YP_001739801  decreased coverage  0.00341886  n/a    Thermotoga sp. RQ2  Bacteria 
 
 
-
 
TRQ2_1796  CDS  NC_010483  1813387  1814247  861  2,5-didehydrogluconate reductase  YP_001739810  decreased coverage  3.13979e-05  n/a    Thermotoga sp. RQ2  Bacteria 
 
 
-
 
TRQ2_1797  CDS  NC_010483  1814259  1815470  1212  major facilitator transporter  YP_001739811  decreased coverage  9.72386e-05  n/a    Thermotoga sp. RQ2  Bacteria 
 
 
-
 
TRQ2_1799  CDS  NC_010483  1816612  1817511  900  AraC family transcriptional regulator  YP_001739813  decreased coverage  5.7295e-05  n/a    Thermotoga sp. RQ2  Bacteria 
 
 
-
 
TRQ2_1830  CDS  NC_010483  1856908  1857624  717  hypothetical protein  YP_001739841  decreased coverage  0.00424727  n/a    Thermotoga sp. RQ2  Bacteria 
 
 
-
 
TRQ2_R0002  tRNA  NC_010483  99279  99367  89  tRNA-Ser    decreased coverage  0.0001521  n/a    Thermotoga sp. RQ2  Bacteria 
 
 
-
 
TRQ2_R0031  tRNA  NC_010483  828600  828676  77  tRNA-Pro    decreased coverage  1.53307e-06  n/a    Thermotoga sp. RQ2  Bacteria 
 
 
-
 
TRQ2_R0037  tRNA  NC_010483  1240659  1240734  76  tRNA-Arg    decreased coverage  5.48287e-05  n/a    Thermotoga sp. RQ2  Bacteria 
 
 
-
 
TRQ2_R0040  tRNA  NC_010483  1284250  1284325  76  tRNA-Ala    decreased coverage  5.0813e-05  n/a    Thermotoga sp. RQ2  Bacteria 
 
 
-
 
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