45 decreased-coverage genes were found for selected organism/s



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Locus tag

Gene type

Replicon accession

From

To

Strand

Gene Length

Product

Protein accession

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Organism name

Kingdom

Coverage Plot

PanDaTox homologs

Experimental validation
Synpcc7942_0053  CDS  NC_007604  55204  56352  1149  hypothetical protein  YP_399072  decreased coverage  5.65511e-05  normal  Synechococcus elongatus PCC 7942  Bacteria 
 
 
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Synpcc7942_0112  CDS  NC_007604  111686  113140  1455  deoxyribodipyrimidine photo-lyase type I  YP_399131  decreased coverage  0.00531501  normal  Synechococcus elongatus PCC 7942  Bacteria 
 
 
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Synpcc7942_0567  CDS  NC_007604  548019  549368  1350  hypothetical protein  YP_399586  normal  0.806895  decreased coverage  0.0060454  Synechococcus elongatus PCC 7942  Bacteria 
 
 
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Synpcc7942_0568  CDS  NC_007604  549371  550687  1317  cytosine deaminase-like protein  YP_399587  normal  0.322505  decreased coverage  0.00702757  Synechococcus elongatus PCC 7942  Bacteria 
 
 
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Synpcc7942_0569  CDS  NC_007604  550718  551653  936  DNA-directed RNA polymerase sigma subunit (sigma70/sigma32)-like  YP_399588  normal  decreased coverage  0.00544782  Synechococcus elongatus PCC 7942  Bacteria 
 
 
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Synpcc7942_0697  CDS  NC_007604  689222  690748  1527  photosystem II core light harvesting protein  YP_399716  decreased coverage  1.6119e-07  normal  0.0946335  Synechococcus elongatus PCC 7942  Bacteria 
 
 
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Synpcc7942_0715  CDS  NC_007604  709992  711179  1188  UDP-N-acetylglucosamine 1-carboxyvinyltransferase  YP_399734  decreased coverage  2.90657e-11  normal  Synechococcus elongatus PCC 7942  Bacteria 
 
 
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Synpcc7942_0854  CDS  NC_007604  850233  852629  2397  hypothetical protein  YP_399871  normal  0.50872  decreased coverage  0.00887321  Synechococcus elongatus PCC 7942  Bacteria 
 
 
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Synpcc7942_0889  CDS  NC_007604  894636  896453  1818  hypothetical protein  YP_399906  normal  0.914068  decreased coverage  0.000140666  Synechococcus elongatus PCC 7942  Bacteria 
 
 
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Synpcc7942_0890  CDS  NC_007604  896748  901358  4611  glutamate synthase (ferredoxin)  YP_399907  hitchhiker  0.00390315  decreased coverage  0.000127994  Synechococcus elongatus PCC 7942  Bacteria 
 
 
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Synpcc7942_0891  CDS  NC_007604  901736  902035  300  hypothetical protein  YP_399908  hitchhiker  1.73413e-08  decreased coverage  8.77955e-05  Synechococcus elongatus PCC 7942  Bacteria 
 
 
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Synpcc7942_0892  CDS  NC_007604  902109  903119  1011  FO synthase subunit 1  YP_399909  decreased coverage  1.47702e-11  decreased coverage  0.000138874  Synechococcus elongatus PCC 7942  Bacteria 
 
 
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Synpcc7942_0893  CDS  NC_007604  903201  904283  1083  photosystem q(b) protein  YP_399910  hitchhiker  2.40892e-10  decreased coverage  0.000169599  Synechococcus elongatus PCC 7942  Bacteria 
 
 
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Synpcc7942_0987  CDS  NC_007604  996280  996723  444  ferric uptake regulator family protein  YP_400004  normal  decreased coverage  0.00388915  Synechococcus elongatus PCC 7942  Bacteria 
 
 
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Synpcc7942_1061  CDS  NC_007604  1072278  1073213  936  hypothetical protein  YP_400078  decreased coverage  1.09934e-10  normal  0.0587349  Synechococcus elongatus PCC 7942  Bacteria 
 
 
 
Synpcc7942_1089  CDS  NC_007604  1104710  1107361  2652  ATPase  YP_400106  normal  decreased coverage  2.77828e-06  Synechococcus elongatus PCC 7942  Bacteria 
 
 
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Synpcc7942_1090  CDS  NC_007604  1107477  1108274  798  hypothetical protein  YP_400107  normal  0.879899  decreased coverage  7.96571e-07  Synechococcus elongatus PCC 7942  Bacteria 
 
 
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Synpcc7942_1091  CDS  NC_007604  1108372  1109535  1164  hypothetical protein  YP_400108  normal  0.25042  decreased coverage  1.18713e-06  Synechococcus elongatus PCC 7942  Bacteria 
 
 
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Synpcc7942_1351  CDS  NC_007604  1382386  1383096  711  HAD family hydrolase  YP_400368  decreased coverage  0.00941248  normal  Synechococcus elongatus PCC 7942  Bacteria 
 
 
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Synpcc7942_1398  CDS  NC_007604  1447847  1450069  2223  cellulose synthase (UDP-forming)  YP_400415  decreased coverage  0.00289904  normal  Synechococcus elongatus PCC 7942  Bacteria 
 
 
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Synpcc7942_1421  CDS  NC_007604  1475239  1475547  309  putative carboxysome assembly protein  YP_400438  decreased coverage  0.00194265  normal  Synechococcus elongatus PCC 7942  Bacteria 
 
 
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Synpcc7942_1451  CDS  NC_007604  1504300  1504761  462  hypothetical protein  YP_400468  normal  decreased coverage  0.00694087  Synechococcus elongatus PCC 7942  Bacteria 
 
 
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Synpcc7942_1452  CDS  NC_007604  1504758  1506194  1437  DNA repair protein RadA  YP_400469  normal  decreased coverage  0.00987951  Synechococcus elongatus PCC 7942  Bacteria 
 
 
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Synpcc7942_1459  CDS  NC_007604  1511592  1512212  621  hypothetical protein  YP_400476  normal  0.0233371  decreased coverage  0.00798208  Synechococcus elongatus PCC 7942  Bacteria 
 
 
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Synpcc7942_1460  CDS  NC_007604  1512321  1512578  258  hypothetical protein  YP_400477  normal  0.0271116  decreased coverage  0.00664473  Synechococcus elongatus PCC 7942  Bacteria 
 
 
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Synpcc7942_1464  CDS  NC_007604  1517237  1518832  1596  porin  YP_400481  decreased coverage  5.40569e-06  normal  0.0535262  Synechococcus elongatus PCC 7942  Bacteria 
 
 
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Synpcc7942_1527  CDS  NC_007604  1586243  1588759  2517  nitrogen assimilation regulatory protein  YP_400544  normal  decreased coverage  0.000360333  Synechococcus elongatus PCC 7942  Bacteria 
 
 
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Synpcc7942_1635  CDS  NC_007604  1702823  1704469  1647  porin; major outer membrane protein  YP_400652  decreased coverage  0.00492408  normal  0.132701  Synechococcus elongatus PCC 7942  Bacteria 
 
 
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Synpcc7942_1791  CDS  NC_007604  1861831  1863066  1236  hypothetical protein  YP_400808  normal  decreased coverage  0.00386684  Synechococcus elongatus PCC 7942  Bacteria 
 
 
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Synpcc7942_1792  CDS  NC_007604  1863290  1864270  981  delta-aminolevulinic acid dehydratase  YP_400809  normal  decreased coverage  0.00323607  Synechococcus elongatus PCC 7942  Bacteria 
 
 
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Synpcc7942_1793  CDS  NC_007604  1864440  1864763  324  thioredoxin  YP_400810  normal  0.99578  decreased coverage  0.00274383  Synechococcus elongatus PCC 7942  Bacteria 
 
 
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Synpcc7942_1794  CDS  NC_007604  1864768  1865946  1179  succinyldiaminopimelate transaminase  YP_400811  normal  0.455812  decreased coverage  0.0036927  Synechococcus elongatus PCC 7942  Bacteria 
 
 
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Synpcc7942_1795  CDS  NC_007604  1865979  1866443  465  SsrA-binding protein  YP_400812  normal  0.398108  decreased coverage  0.00283091  Synechococcus elongatus PCC 7942  Bacteria 
 
 
-
 
Synpcc7942_1899  CDS  NC_007604  1972290  1972778  489  hypothetical protein  YP_400916  decreased coverage  0.000990864  normal  0.472298  Synechococcus elongatus PCC 7942  Bacteria 
 
 
-
 
Synpcc7942_2244  CDS  NC_007604  2309788  2310333  546  6,7-dimethyl-8-ribityllumazine synthase  YP_401261  decreased coverage  2.19282e-10  normal  0.593282  Synechococcus elongatus PCC 7942  Bacteria 
 
 
-
 
Synpcc7942_2367  CDS  NC_007604  2432951  2433454  504  hypothetical protein  YP_401384  decreased coverage  0.00815435  normal  Synechococcus elongatus PCC 7942  Bacteria 
 
 
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Synpcc7942_2402  CDS  NC_007604  2476025  2477155  1131  hypothetical protein  YP_401419  hitchhiker  0.00162245  decreased coverage  0.000927611  Synechococcus elongatus PCC 7942  Bacteria 
 
 
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Synpcc7942_2404  CDS  NC_007604  2477807  2478547  741  hypothetical protein  YP_401421  decreased coverage  8.61354e-05  normal  0.0119521  Synechococcus elongatus PCC 7942  Bacteria 
 
 
-
 
Synpcc7942_2405  CDS  NC_007604  2478739  2478993  255  hypothetical protein  YP_401422  decreased coverage  1.2248e-05  hitchhiker  0.00954272  Synechococcus elongatus PCC 7942  Bacteria 
 
 
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Synpcc7942_2406  CDS  NC_007604  2479051  2480190  1140  FAD dependent oxidoreductase  YP_401423  decreased coverage  0.000101651  normal  0.0131925  Synechococcus elongatus PCC 7942  Bacteria 
 
 
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Synpcc7942_2540  CDS  NC_007604  2621837  2622298  462  blue-copper-protein-like protein  YP_401557  decreased coverage  0.00275414  normal  Synechococcus elongatus PCC 7942  Bacteria 
 
 
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Synpcc7942_2541  CDS  NC_007604  2622353  2622766  414  50S ribosomal protein L19  YP_401558  decreased coverage  0.00272416  normal  Synechococcus elongatus PCC 7942  Bacteria 
 
 
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Synpcc7942_R0009  tRNA  NC_007604  2309655  2309726  72  tRNA-Gly    decreased coverage  1.99446e-10  normal  0.87079  Synechococcus elongatus PCC 7942  Bacteria 
 
 
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Synpcc7942_R0014  tRNA  NC_007604  2478513  2478585  73  tRNA-Phe    decreased coverage  7.2957e-06  hitchhiker  0.009028  Synechococcus elongatus PCC 7942  Bacteria 
 
 
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Synpcc7942_R0040  tRNA  NC_007604  711226  711312  87  tRNA-Leu    decreased coverage  8.76767e-14  normal  Synechococcus elongatus PCC 7942  Bacteria 
 
 
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