2943 genes were found for organism Thioalkalivibrio sp. K90mix



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Locus tag

Gene type

Replicon accession

From

To

Strand

Gene Length

Product

Protein accession

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Organism name

Kingdom

Coverage Plot

PanDaTox homologs

Experimental validation
TK90_0001  CDS  NC_013889  118  1485  1368  chromosomal replication initiator protein DnaA  YP_003459254  normal  normal  0.738178  Thioalkalivibrio sp. K90mix  Bacteria 
 
 
-
 
TK90_0002  CDS  NC_013889  1738  2841  1104  DNA polymerase III, beta subunit  YP_003459255  normal  0.40244  normal  0.672581  Thioalkalivibrio sp. K90mix  Bacteria 
 
 
-
 
TK90_0003  CDS  NC_013889  2865  3938  1074  DNA replication and repair protein RecF  YP_003459256  normal  normal  0.795799  Thioalkalivibrio sp. K90mix  Bacteria 
 
 
-
 
TK90_0004  CDS  NC_013889  4005  6437  2433  DNA gyrase, B subunit  YP_003459257  normal  normal  0.311816  Thioalkalivibrio sp. K90mix  Bacteria 
 
 
-
 
TK90_0005  CDS  NC_013889  6444  6974  531  hypothetical protein  YP_003459258  normal  normal  0.529145  Thioalkalivibrio sp. K90mix  Bacteria 
 
 
-
 
TK90_0006  CDS  NC_013889  7070  9118  2049  Oligopeptidase A  YP_003459259  normal  0.322163  normal  0.727066  Thioalkalivibrio sp. K90mix  Bacteria 
 
 
-
 
TK90_0007  CDS  NC_013889  9115  9882  768  exodeoxyribonuclease III Xth  YP_003459260  normal  normal  0.669681  Thioalkalivibrio sp. K90mix  Bacteria 
 
 
-
 
TK90_0008  CDS  NC_013889  9916  11379  1464  UbiD family decarboxylase  YP_003459261  normal  normal  0.815187  Thioalkalivibrio sp. K90mix  Bacteria 
 
 
-
 
TK90_0009  CDS  NC_013889  11409  11981  573  hypothetical protein  YP_003459262  normal  normal  0.517045  Thioalkalivibrio sp. K90mix  Bacteria 
 
 
-
 
TK90_0010  CDS  NC_013889  12140  13168  1029  ferredoxin  YP_003459263  normal  normal  0.484136  Thioalkalivibrio sp. K90mix  Bacteria 
 
 
-
 
TK90_0011  CDS  NC_013889  13188  14003  816  Uroporphyrinogen III synthase HEM4  YP_003459264  normal  normal  0.458741  Thioalkalivibrio sp. K90mix  Bacteria 
 
 
-
 
TK90_0012  CDS  NC_013889  14006  14953  948  porphobilinogen deaminase  YP_003459265  normal  normal  0.625024  Thioalkalivibrio sp. K90mix  Bacteria 
 
 
-
 
TK90_0013  CDS  NC_013889  15048  15773  726  two component transcriptional regulator, LytTR family  YP_003459266  normal  normal  0.349161  Thioalkalivibrio sp. K90mix  Bacteria 
 
 
-
 
TK90_0014  CDS  NC_013889  15763  16803  1041  signal transduction histidine kinase, LytS  YP_003459267  normal  normal  0.292227  Thioalkalivibrio sp. K90mix  Bacteria 
 
 
-
 
TK90_0015  CDS  NC_013889  16911  18347  1437  argininosuccinate lyase  YP_003459268  normal  normal  0.243165  Thioalkalivibrio sp. K90mix  Bacteria 
 
 
-
 
TK90_0016  CDS  NC_013889  18397  18900  504  hypothetical protein  YP_003459269  normal  0.677756  normal  0.1219  Thioalkalivibrio sp. K90mix  Bacteria 
 
 
-
 
TK90_0017  CDS  NC_013889  19040  20542  1503  protein of unknown function UPF0061  YP_003459270  normal  0.394227  normal  0.227022  Thioalkalivibrio sp. K90mix  Bacteria 
 
 
-
 
TK90_0018  CDS  NC_013889  20558  21046  489  UspA domain protein  YP_003459271  normal  normal  0.317282  Thioalkalivibrio sp. K90mix  Bacteria 
 
 
-
 
TK90_0019  CDS  NC_013889  21280  22824  1545  sulphate transporter  YP_003459272  normal  normal  0.32634  Thioalkalivibrio sp. K90mix  Bacteria 
 
 
-
 
TK90_0020  CDS  NC_013889  23090  23818  729  Rhomboid family protein  YP_003459273  normal  0.430888  normal  0.257082  Thioalkalivibrio sp. K90mix  Bacteria 
 
 
-
 
TK90_0021  CDS  NC_013889  23930  26047  2118  TonB-dependent receptor  YP_003459274  normal  normal  0.225049  Thioalkalivibrio sp. K90mix  Bacteria 
 
 
-
 
TK90_0022  CDS  NC_013889  26288  27316  1029  porin Gram-negative type  YP_003459275  normal  0.561527  normal  0.116595  Thioalkalivibrio sp. K90mix  Bacteria 
 
 
-
 
TK90_0023  CDS  NC_013889  27493  29112  1620  choline/carnitine/betaine transporter  YP_003459276  normal  normal  0.16107  Thioalkalivibrio sp. K90mix  Bacteria 
 
 
-
 
TK90_0024  CDS  NC_013889  29353  30405  1053  porin Gram-negative type  YP_003459277  normal  normal  0.133917  Thioalkalivibrio sp. K90mix  Bacteria 
 
 
-
 
TK90_0025  CDS  NC_013889  30693  31211  519  transcriptional regulator, MarR family  YP_003459278  normal  normal  0.209709  Thioalkalivibrio sp. K90mix  Bacteria 
 
 
-
 
TK90_0026  CDS  NC_013889  31238  31639  402  hypothetical protein  YP_003459279  normal  normal  0.147913  Thioalkalivibrio sp. K90mix  Bacteria 
 
 
-
 
TK90_0027  CDS  NC_013889  31709  32950  1242  amidase, hydantoinase/carbamoylase family  YP_003459280  normal  normal  0.187879  Thioalkalivibrio sp. K90mix  Bacteria 
 
 
-
 
TK90_0028  CDS  NC_013889  32987  33730  744  isochorismatase hydrolase  YP_003459281  normal  normal  0.123472  Thioalkalivibrio sp. K90mix  Bacteria 
 
 
-
 
TK90_0029  CDS  NC_013889  33727  35193  1467  Na+/solute symporter  YP_003459282  normal  normal  0.080483  Thioalkalivibrio sp. K90mix  Bacteria 
 
 
-
 
TK90_0030  CDS  NC_013889  35190  35312  123  hypothetical protein  YP_003459283  normal  normal  0.348124  Thioalkalivibrio sp. K90mix  Bacteria 
 
 
-
 
TK90_0031  CDS  NC_013889  35300  36382  1083  aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain protein  YP_003459284  normal  normal  0.436716  Thioalkalivibrio sp. K90mix  Bacteria 
 
 
-
 
TK90_0032  CDS  NC_013889  36472  38490  2019  asparagine synthase (glutamine-hydrolyzing)  YP_003459285  normal  normal  0.579611  Thioalkalivibrio sp. K90mix  Bacteria 
 
 
-
 
TK90_0033  CDS  NC_013889  38549  39433  885  PfkB domain protein  YP_003459286  normal  0.49998  normal  Thioalkalivibrio sp. K90mix  Bacteria 
 
 
-
 
TK90_0034  CDS  NC_013889  39468  40769  1302  diguanylate cyclase  YP_003459287  normal  0.523887  normal  0.941955  Thioalkalivibrio sp. K90mix  Bacteria 
 
 
-
 
TK90_0035  CDS  NC_013889  40851  41723  873  Endonuclease/exonuclease/phosphatase  YP_003459288  normal  0.742577  normal  Thioalkalivibrio sp. K90mix  Bacteria 
 
 
-
 
TK90_0036  CDS  NC_013889  41771  43414  1644  thiamine pyrophosphate protein TPP binding domain protein  YP_003459289  normal  normal  Thioalkalivibrio sp. K90mix  Bacteria 
 
 
-
 
TK90_0037  CDS  NC_013889  43456  44088  633  DSBA oxidoreductase  YP_003459290  normal  normal  0.763782  Thioalkalivibrio sp. K90mix  Bacteria 
 
 
-
 
TK90_0038  CDS  NC_013889  44089  45261  1173  cytochrome c-type biogenesis protein CcsB  YP_003459291  normal  normal  0.854137  Thioalkalivibrio sp. K90mix  Bacteria 
 
 
-
 
TK90_0039  CDS  NC_013889  45309  47345  2037  ResB family protein  YP_003459292  normal  normal  Thioalkalivibrio sp. K90mix  Bacteria 
 
 
-
 
TK90_0040  CDS  NC_013889  47611  48234  624  cytochrome c class I  YP_003459293  normal  normal  Thioalkalivibrio sp. K90mix  Bacteria 
 
 
-
 
TK90_0041  CDS  NC_013889  48682  49293  612  ribosome biogenesis GTP-binding protein YsxC  YP_003459294  normal  0.940208  normal  Thioalkalivibrio sp. K90mix  Bacteria 
 
 
-
 
TK90_0042  CDS  NC_013889  49537  50184  648  electron transport protein SCO1/SenC  YP_003459295  normal  normal  Thioalkalivibrio sp. K90mix  Bacteria 
 
 
-
 
TK90_0043  CDS  NC_013889  50195  50689  495  hypothetical protein  YP_003459296  normal  0.761972  normal  Thioalkalivibrio sp. K90mix  Bacteria 
 
 
-
 
TK90_0044  CDS  NC_013889  50695  53430  2736  DNA polymerase I  YP_003459297  normal  0.812891  normal  Thioalkalivibrio sp. K90mix  Bacteria 
 
 
-
 
TK90_0045  CDS  NC_013889  53516  54241  726  hypothetical protein  YP_003459298  normal  0.666378  normal  Thioalkalivibrio sp. K90mix  Bacteria 
 
 
-
 
TK90_0046  CDS  NC_013889  54244  54642  399  hypothetical protein  YP_003459299  normal  normal  Thioalkalivibrio sp. K90mix  Bacteria 
 
 
-
 
TK90_0047  CDS  NC_013889  54642  55478  837  hypothetical protein  YP_003459300  normal  normal  Thioalkalivibrio sp. K90mix  Bacteria 
 
 
-
 
TK90_0048  CDS  NC_013889  55513  56166  654  PKD domain containing protein  YP_003459301  normal  normal  Thioalkalivibrio sp. K90mix  Bacteria 
 
 
-
 
TK90_0049  CDS  NC_013889  56343  57440  1098  signal transduction histidine kinase, nitrogen specific, NtrB  YP_003459302  normal  normal  Thioalkalivibrio sp. K90mix  Bacteria 
 
 
-
 
TK90_0050  CDS  NC_013889  57440  58876  1437  nitrogen metabolism transcriptional regulator, NtrC, Fis Family  YP_003459303  normal  normal  Thioalkalivibrio sp. K90mix  Bacteria 
 
 
-
 
TK90_0051  CDS  NC_013889  58883  59875  993  dihydroorotate dehydrogenase family protein  YP_003459304  normal  normal  Thioalkalivibrio sp. K90mix  Bacteria 
 
 
-
 
TK90_0052  CDS  NC_013889  59874  60338  465  RNA methyltransferase, TrmH family, group 2  YP_003459305  normal  normal  Thioalkalivibrio sp. K90mix  Bacteria 
 
 
-
 
TK90_0053  CDS  NC_013889  60457  61329  873  dienelactone hydrolase  YP_003459306  normal  normal  Thioalkalivibrio sp. K90mix  Bacteria 
 
 
-
 
TK90_0054  CDS  NC_013889  61567  62775  1209  phosphofructokinase  YP_003459307  normal  normal  Thioalkalivibrio sp. K90mix  Bacteria 
 
 
-
 
TK90_0055  CDS  NC_013889  62879  63535  657  adenylate kinase  YP_003459308  normal  normal  Thioalkalivibrio sp. K90mix  Bacteria 
 
 
-
 
TK90_0056  CDS  NC_013889  63687  64853  1167  hypothetical protein  YP_003459309  normal  normal  Thioalkalivibrio sp. K90mix  Bacteria 
 
 
-
 
TK90_0057  CDS  NC_013889  64925  65908  984  DMSO reductase anchor subunit (DmsC)  YP_003459310  normal  normal  Thioalkalivibrio sp. K90mix  Bacteria 
 
 
-
 
TK90_0058  CDS  NC_013889  65926  66657  732  4Fe-4S ferredoxin iron-sulfur binding domain protein  YP_003459311  normal  normal  Thioalkalivibrio sp. K90mix  Bacteria 
 
 
-
 
TK90_0059  CDS  NC_013889  66942  69803  2862  molybdopterin oxidoreductase Fe4S4 region  YP_003459312  normal  normal  Thioalkalivibrio sp. K90mix  Bacteria 
 
 
-
 
TK90_0060  CDS  NC_013889  70029  70565  537  phosphodiesterase, MJ0936 family  YP_003459313  normal  0.876718  normal  Thioalkalivibrio sp. K90mix  Bacteria 
 
 
-
 
TK90_0061  CDS  NC_013889  70692  71297  606  CBS domain containing protein  YP_003459314  normal  0.315899  normal  Thioalkalivibrio sp. K90mix  Bacteria 
 
 
-
 
TK90_0062  CDS  NC_013889  71367  72557  1191  sulfate adenylyltransferase  YP_003459315  normal  0.794108  normal  Thioalkalivibrio sp. K90mix  Bacteria 
 
 
-
 
TK90_0063  CDS  NC_013889  73072  73902  831  hypothetical protein  YP_003459316  normal  0.836438  normal  Thioalkalivibrio sp. K90mix  Bacteria 
 
 
-
 
TK90_0064  CDS  NC_013889  73942  74421  480  adenylylsulfate reductase, beta subunit  YP_003459317  normal  normal  Thioalkalivibrio sp. K90mix  Bacteria 
 
 
-
 
TK90_0065  CDS  NC_013889  74421  76319  1899  adenylylsulfate reductase, alpha subunit  YP_003459318  normal  0.683279  normal  Thioalkalivibrio sp. K90mix  Bacteria 
 
 
-
 
TK90_0066  CDS  NC_013889  76477  76827  351  hypothetical protein  YP_003459319  normal  0.929961  normal  Thioalkalivibrio sp. K90mix  Bacteria 
 
 
-
 
TK90_0067  CDS  NC_013889  76844  77356  513  putative peptidyl-prolyl cis-trans isomerase  YP_003459320  normal  normal  Thioalkalivibrio sp. K90mix  Bacteria 
 
 
-
 
TK90_0068  CDS  NC_013889  77449  77613  165  hypothetical protein  YP_003459321  normal  normal  Thioalkalivibrio sp. K90mix  Bacteria 
 
 
-
 
TK90_0069  CDS  NC_013889  77764  79191  1428  major facilitator superfamily MFS_1  YP_003459322  normal  0.805125  normal  Thioalkalivibrio sp. K90mix  Bacteria 
 
 
-
 
TK90_0070  CDS  NC_013889  79213  79986  774  exodeoxyribonuclease III Xth  YP_003459323  normal  normal  Thioalkalivibrio sp. K90mix  Bacteria 
 
 
-
 
TK90_0071  CDS  NC_013889  80090  80725  636  orotate phosphoribosyltransferase  YP_003459324  normal  normal  Thioalkalivibrio sp. K90mix  Bacteria 
 
 
-
 
TK90_0072  CDS  NC_013889  80731  81735  1005  Peptidoglycan-binding lysin domain protein  YP_003459325  normal  0.859252  normal  0.733338  Thioalkalivibrio sp. K90mix  Bacteria 
 
 
-
 
TK90_0073  CDS  NC_013889  81741  82571  831  protein serine/threonine phosphatase  YP_003459326  normal  normal  0.736868  Thioalkalivibrio sp. K90mix  Bacteria 
 
 
-
 
TK90_0074  CDS  NC_013889  82647  83597  951  hypothetical protein  YP_003459327  normal  0.157936  normal  0.959579  Thioalkalivibrio sp. K90mix  Bacteria 
 
 
-
 
TK90_0075  CDS  NC_013889  83886  84206  321  hypothetical protein  YP_003459328  normal  0.163774  normal  Thioalkalivibrio sp. K90mix  Bacteria 
 
 
-
 
TK90_0076  CDS  NC_013889  84774  85739  966  transposase IS4 family protein  YP_003459329  normal  0.0258707  normal  Thioalkalivibrio sp. K90mix  Bacteria 
 
 
-
 
TK90_0077  CDS  NC_013889  85851  86546  696  D-Ala-D-Ala dipeptidase  YP_003459330  normal  0.033757  normal  Thioalkalivibrio sp. K90mix  Bacteria 
 
 
-
 
TK90_0078  CDS  NC_013889  86699  87604  906  protein of unknown function DUF6 transmembrane  YP_003459331  normal  0.138345  normal  Thioalkalivibrio sp. K90mix  Bacteria 
 
 
-
 
TK90_0079  CDS  NC_013889  87666  88661  996  D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein  YP_003459332  normal  normal  Thioalkalivibrio sp. K90mix  Bacteria 
 
 
-
 
TK90_0080  CDS  NC_013889  88722  89681  960  beta-lactamase domain protein  YP_003459333  normal  normal  Thioalkalivibrio sp. K90mix  Bacteria 
 
 
-
 
TK90_0081  CDS  NC_013889  89693  91045  1353  chromate transporter, chromate ion transporter (CHR) family  YP_003459334  normal  normal  0.826612  Thioalkalivibrio sp. K90mix  Bacteria 
 
 
-
 
TK90_0082  CDS  NC_013889  91042  92013  972  Chromate resistance exported protein  YP_003459335  normal  normal  0.908609  Thioalkalivibrio sp. K90mix  Bacteria 
 
 
-
 
TK90_0083  CDS  NC_013889  92161  93381  1221  transposase IS204/IS1001/IS1096/IS1165 family protein  YP_003459336  normal  normal  Thioalkalivibrio sp. K90mix  Bacteria 
 
 
-
 
TK90_0084  CDS  NC_013889  93440  94453  1014  Inositol phosphatase/fructose-16-bisphosphatase  YP_003459337  normal  normal  Thioalkalivibrio sp. K90mix  Bacteria 
 
 
-
 
TK90_0085  CDS  NC_013889  94674  95939  1266  phosphofructokinase  YP_003459338  normal  normal  Thioalkalivibrio sp. K90mix  Bacteria 
 
 
-
 
TK90_0086  CDS  NC_013889  95949  96188  240  hypothetical protein  YP_003459339  normal  normal  Thioalkalivibrio sp. K90mix  Bacteria 
 
 
-
 
TK90_0087  CDS  NC_013889  96357  96782  426  hypothetical protein  YP_003459340  normal  normal  Thioalkalivibrio sp. K90mix  Bacteria 
 
 
-
 
TK90_0088  CDS  NC_013889  96952  97371  420  hypothetical protein  YP_003459341  normal  normal  Thioalkalivibrio sp. K90mix  Bacteria 
 
 
-
 
TK90_0089  CDS  NC_013889  97379  98407  1029  hypothetical protein  YP_003459342  normal  normal  Thioalkalivibrio sp. K90mix  Bacteria 
 
 
-
 
TK90_0090  CDS  NC_013889  98419  98646  228  hypothetical protein  YP_003459343  normal  normal  Thioalkalivibrio sp. K90mix  Bacteria 
 
 
-
 
TK90_0091  CDS  NC_013889  98789  99280  492  pantetheine-phosphate adenylyltransferase  YP_003459344  normal  normal  Thioalkalivibrio sp. K90mix  Bacteria 
 
 
-
 
TK90_0092  CDS  NC_013889  99314  99562  249  4Fe-4S ferredoxin iron-sulfur binding domain protein  YP_003459345  normal  normal  Thioalkalivibrio sp. K90mix  Bacteria 
 
 
-
 
TK90_0093  CDS  NC_013889  99565  101268  1704  gamma-glutamyltransferase  YP_003459346  normal  normal  Thioalkalivibrio sp. K90mix  Bacteria 
 
 
-
 
TK90_0094  CDS  NC_013889  101410  101679  270  ribosomal protein S20  YP_003459347  normal  normal  Thioalkalivibrio sp. K90mix  Bacteria 
 
 
-
 
TK90_0095  CDS  NC_013889  101836  102366  531  Domain of unknown function DUF1791  YP_003459348  normal  0.921438  normal  Thioalkalivibrio sp. K90mix  Bacteria 
 
 
-
 
TK90_0096  CDS  NC_013889  102693  104900  2208  UvrD/REP helicase  YP_003459349  normal  0.60003  normal  Thioalkalivibrio sp. K90mix  Bacteria 
 
 
-
 
TK90_0097  CDS  NC_013889  105078  107879  2802  2-oxoglutarate dehydrogenase, E1 subunit  YP_003459350  normal  0.413523  normal  Thioalkalivibrio sp. K90mix  Bacteria 
 
 
-
 
TK90_0098  CDS  NC_013889  107908  109221  1314  2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase  YP_003459351  normal  normal  Thioalkalivibrio sp. K90mix  Bacteria 
 
 
-
 
TK90_0099  CDS  NC_013889  109365  110201  837  phosphonate ABC transporter, periplasmic phosphonate-binding protein  YP_003459352  normal  0.334865  normal  Thioalkalivibrio sp. K90mix  Bacteria 
 
 
-
 
TK90_0100  CDS  NC_013889  110198  111538  1341  diguanylate cyclase  YP_003459353  normal  0.246337  normal  Thioalkalivibrio sp. K90mix  Bacteria 
 
 
-
 
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