Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_0956 |
Symbol | |
ID | 7970131 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | - |
Start bp | 1050164 |
End bp | 1053079 |
Gene Length | 2916 bp |
Protein Length | 971 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 644791552 |
Product | ribonucleotide-diphosphate reductase subunit alpha |
Protein accession | YP_002942873 |
Protein GI | 239813963 |
COG category | [F] Nucleotide transport and metabolism |
COG ID | [COG0209] Ribonucleotide reductase, alpha subunit |
TIGRFAM ID | [TIGR02506] ribonucleoside-diphosphate reductase, alpha subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.328606 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCAAACAG CCCTGAACAC CCCATCGACC TCGCGTGCCG TTCCCTCCAC GCCCACGCAG CAGCAGCGCG ACACCGCCGG CTCGCCCGCC GGACAGAACC TCGCGCACTA CCAGATCATC CGCCGCAACG GCGCCGTGGT TCCCTTCGAA CCCAACAAGA TCGCTATCGC GATGATGAAA GCCTTCCTGG CCGTGCACGG CACCCAGGGC GCGGCTTCGG CCAGCGTGCG CGAAACCGTC GACGCGCTCA CGCAAGGCGT GATCCGCGCC ATGGTGCGTT CGCGTCCGGG CGGCGGCACC TTCCACATCG AAGACGTGCA GGACCAGGTC GAACTCGGCC TGATGCGCGG CGGCCATCAC GAGATCGCGC GCGCCTACGT GCTCTACCGC GAGCGCCGCA CGCAGGAGCG TTCCAAGCAG GTCGAGCAGG AAGCGCCCGC CACCCCCACG CTGCACGTGC TGGACAACGG CGAACGCGTC GCGCTCGACC TGAACCAGCT CAAGGGCCTG ATCGAATCGG CCTGCGAAAA CCTGGGCGAC AGCATCACCG CTGCGCCGAT CGTCGCTGAA ACGATGCGCA ACCTGTACGA CGGCGTGCCG CTCGACGAGG TCTACAAGGC CTCGATCCTG GCGGCCCGCA CGCTGATCGA AAAAGACCCC GACTACACCT TTGCCACCGC CCGCCTGCTG CTGCACACGA TCTTCAAGGA GATCATCGGC CGCGAAGTGA TGCCCGCCGA GCGCGCCACC GCCTACGCCG ACTACTTCCC GCAGTTCATC AAGAAGGGCG TCGAGAACGA CCTGCTCGAC GAGAAGCTGC TGCAGTACGA CCTGCCGCGC CTGGGCGCCG CGCTCAAGGC CGAACGCGAC AACCAGTTCG ACTACCTCGG CCTGCAAACG CTGTACGACC GCTACTTCCT GCACGTGCGC AAGTCGCGCA TCGAACTGCC ACAGGCCTTC TTCATGCGCG TGGCCATGGG CCTGTCGCTC GGCGAAATCG ACCGCGAGGC CCGCGCCATC GAGTTCTACG AGGTGCTGTC GTCCTTCGAC TTCATGTCGA GCACGCCCAC CCTGTTCAAC GCCGGCACGC TGCGCTCGCA GCTGTCCAGC TGCTACCTGA CCACCGTGCC CGACGACCTG GACGGCATCT ACGAATCGAT CAAGGAAAAC GCGCTGCTCT CCAAGTTCGC GGGCGGCCTG GGCAACGACT GGACCCGCGT GCGCGCGCTC GGCAGCCACA TCAAGGGCAC CAACGGCGAA TCGCAGGGCG TGGTGCCCTT CCTCAAGGTG GTCAACGACA CGGCCGTGGC CGTGAACCAG GGCGGCAAGC GCAAGGGCGC CGTCTGCACG TACCTGGAAA CCTGGCACCT CGACATCGAG GAGTTCCTGG AACTGCGCAA GAACACCGGC GACGACCGCC GCCGCACGCA CGACATGAAC ACCGCCAACT GGATCCCCGA CCTCTTCATG CGCCGCGTGA TGGAAAAGGG CACCTGGACG CTGTTCTCGC CCTCCAACGT GCCCGACCTG CACGACCTGT TCGGCGCCGA CTTCGAGAAG GCGTATGTCG CCTACGAAGA AAAGGCCGCG CGCGGCGAGA TCAAGCCTGC CCGCACCATC CAGGCCTCGG ACCTGTGGCG CAAGATGCTC ACGATGCTGT TCGAGACCGG CCATCCCTGG ATCACGTTCA AGGACGCCTG CAACGTGCGC TCGCCGCAGC AGCACGCCGG CGTGGTGCAC TCGTCGAACC TGTGCACCGA GATCACGCTG AACACCAGCG ACACCGAAAC CGCCGTCTGC AACCTGGGTT CGGTGAACCT GCTGCAGCAC CTGAAGGACG GCAAGGTCGA CCAGGAAAAG CTCAAGCGCA CCATCTCGAC CGCGATGCGC ATGCTCGACA ACGTGATCGA CATCAACTAC TACGCCGTGA AGAAGGCGCG CGACTCGAAC CTGCGCCACC GCCCGGTCGG CCTGGGCCTG ATGGGCTTCC AGGACGCGCT GTACGAACTG CGCATTCCCT ACGCTTCGCA GGAAGCCGTG CAGTTTGCCG ACGAGTCGAT GGAAGCCATC TGCTACCACG CCTACTGGGC CTCGACCGAG CTGGCCCGCG AACGCGGCAA GTACTCGAGC TACAAGGGCT CGCTGTGGGA CAAGGGGATC CTTCCGATCG ACACGCTCGA CCTGCTCGAA AAAGCCCGCG GCGGCTACGT CGAAGTGGAC CGCTCGGCCA CGCTCGACTG GGAGGCCCTG CGCCAGAAGA TCAAGGCCGA CGGCATGCGC AATTCCAACT GCGTGGCCAT CGCCCCGACC GCGACCATCT CGAACATCAT CGGCGTCGAC GCTTCCATCG AGCCCTGCTT CGGCAACCTC TCGGTCAAGT CGAACCTGTC GGGCGAATTC ACCGTCATCA ACCACTACCT GGTGCGCGAC CTGAAGCGCC TGGGCCTGTG GGACGACGTG ATGGTGATGG ACCTGAAGCA CTTCGACGGT TCGCTGCGTC CGATCGACCG CGTGCCGCAG GACGTGAAGG CGCTCTACGC CACCGCGTTC GAAGTCGAGA CCACCTGGCT GGTCGAAGCC GCAGCGCGCC GCCAGAAGTG GATCGACCAG GCGCAGTCGC TCAACATCTA CATGGCCGGC GCATCGGGCA AGAAGCTCGA CGACACCTAC AAGCTCGCAT GGCTGCGCGG CCTGAAGACC ACCTACTACC TGCGCACGCA GAGCGCGACG CACGCCGAGA AATCCACCGT GCAGTCGGGC CGCCTCAACG CGGTGTCGTC GGGCAGCGAT GCCTCTTCGG GCATGAGCGC ACTCGAAGCC GCAGCTGCCG CAGCGAAGGC GCAGATGAGT GCAATGCCTG CCACCGACAT CGCGTTCTGC GGCGTCGACG ATCCGACTTG CGAAGCATGC CAATGA
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Protein sequence | MQTALNTPST SRAVPSTPTQ QQRDTAGSPA GQNLAHYQII RRNGAVVPFE PNKIAIAMMK AFLAVHGTQG AASASVRETV DALTQGVIRA MVRSRPGGGT FHIEDVQDQV ELGLMRGGHH EIARAYVLYR ERRTQERSKQ VEQEAPATPT LHVLDNGERV ALDLNQLKGL IESACENLGD SITAAPIVAE TMRNLYDGVP LDEVYKASIL AARTLIEKDP DYTFATARLL LHTIFKEIIG REVMPAERAT AYADYFPQFI KKGVENDLLD EKLLQYDLPR LGAALKAERD NQFDYLGLQT LYDRYFLHVR KSRIELPQAF FMRVAMGLSL GEIDREARAI EFYEVLSSFD FMSSTPTLFN AGTLRSQLSS CYLTTVPDDL DGIYESIKEN ALLSKFAGGL GNDWTRVRAL GSHIKGTNGE SQGVVPFLKV VNDTAVAVNQ GGKRKGAVCT YLETWHLDIE EFLELRKNTG DDRRRTHDMN TANWIPDLFM RRVMEKGTWT LFSPSNVPDL HDLFGADFEK AYVAYEEKAA RGEIKPARTI QASDLWRKML TMLFETGHPW ITFKDACNVR SPQQHAGVVH SSNLCTEITL NTSDTETAVC NLGSVNLLQH LKDGKVDQEK LKRTISTAMR MLDNVIDINY YAVKKARDSN LRHRPVGLGL MGFQDALYEL RIPYASQEAV QFADESMEAI CYHAYWASTE LARERGKYSS YKGSLWDKGI LPIDTLDLLE KARGGYVEVD RSATLDWEAL RQKIKADGMR NSNCVAIAPT ATISNIIGVD ASIEPCFGNL SVKSNLSGEF TVINHYLVRD LKRLGLWDDV MVMDLKHFDG SLRPIDRVPQ DVKALYATAF EVETTWLVEA AARRQKWIDQ AQSLNIYMAG ASGKKLDDTY KLAWLRGLKT TYYLRTQSAT HAEKSTVQSG RLNAVSSGSD ASSGMSALEA AAAAAKAQMS AMPATDIAFC GVDDPTCEAC Q
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