Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VIBHAR_06452 |
Symbol | |
ID | 5557135 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Vibrio harveyi ATCC BAA-1116 |
Kingdom | Bacteria |
Replicon accession | NC_009784 |
Strand | - |
Start bp | 1608945 |
End bp | 1610516 |
Gene Length | 1572 bp |
Protein Length | 523 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 640910925 |
Product | ABC-type RTX toxin transporter ATPase and permease components |
Protein accession | YP_001448570 |
Protein GI | 156977664 |
COG category | [V] Defense mechanisms |
COG ID | [COG2274] ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain |
TIGRFAM ID | [TIGR01846] type I secretion system ABC transporter, HlyB family |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGATCGCCC TAGTGACTCC CTTGGTGTTT GAGAATGTGA TCGACCGCGT CTTGGTCAGT CGGAGTGTGT CTAGTTTGCA CGTATTGGGC ATCGCGTTGT TGACCATGGC GGTGTTTGAA CCGCTGTTTG GCTATCTGCG CAGTTGGATG TATGCCAATT TGGCCAACAA ATTGAACGCC GAGTTGAGCG CTCGTTTGTA CGCCCACTTA ATGGCCTTGC CACTGCGCTA TTTCAACCAG CGCCAGACCG GCCAAATCAC CGCCAGAGTG CGCGAAATGG ACCAGATCCG CCAGTTTTTG GCAGGCTCTG CCTTGACACT GATACTGGAC TTGGTGTTTG TCGGGATCTT TATCGCCGTG TTGTTTGCCT ATGCGCCGTT CTTGACGTGG TTAGTACTGG GTTCGCTGGT CCTGTATTTC GTGTTCTGGC TCGCTATCGG CCCCACGCTT CGTGCCAAAG TGACCAAGGA ATACGAAACC GCGGCGGATA ATACCGCGTT TCTTACGGAA TCCATCTCGG GTATTGAGAC GGTTAAGACC AACACGTTAG AGCCGAGTTT TGAAAAACGC TGGCAACATC ATCTCGCAGG ACAACTGAAG GCCGGCTTCA GAGCGCGAGT GGTATCGATT TGGGCAGAGC AAGGGATTGG CTTGATCCAA AAATTGACCG CCGCGCTTAC GTTATGGTGG GGGGTAAAAT TGGTGCTTGC GGGCGAGCTA TCACCAGGGG AGCTGGTGGC ATTTAACATG CTCGCGGGTC AGGTCACGCA ACCTATCTTA CGCCTGGCGC AAGTCTGGCA AGATTTTCAG CACACCTTGA TCGCTTTGCG CCGCGTGGGG GATATTTTAT ACGAACCTCA AGAAGCGGGG AGTGGGGGGC TTGCCTCAAT CCCATCGATG CGGGGTGAGG TGACGTTTAA TCAAGTGCGA TTTCGCTATG ATACGGACGC CCCAGAAGTG TTGAAGAATC TCAGTTTGAC GATCAAAGCC GGTGAATTTG TTGGCATCAC CGGGCGCTCC GGATCGGGCA AGAGTACGCT AACGAAATTG CTGCAGCGCC TCTATGTGCC AACTTCCGGC CAAGTCTTGG TCGATGGAAT GGACTTGGCC ATTGCCGACC CGGTTGAGTT GCGACGAAAT ATGAGTGTGG TGTTGCAAGA AAGCTGCCTG TTTGGCGGGA CCATCGCCGA CAATATCCGA CAGTGCGCGC CAAATGCTTC GGACGAAGCG ATCGTGCAGG CCGCCCAACT TGCCGGCGCG CATGATTTCA TTCTCGACCT GCCCCAAGGG TACAACGCGC AAGTAGGGGA AAGTGGCAGT CGCCTTTCAG GAGGGCAGCG GCAGCGAATA GCATTGGCGC GCGCCCTCAT CACCAATCCG CGCATTTTGA TACTCGACGA AGCGACCAGC GCGCTTGATT ACGAATCAGA AGCAGCAATT ATCTCGCGAC TGCCCGAGAT CTCGCAAGGT CGAACGGTGA TCAGTATTGC GCATCGACTC TCGACACTCG CACATTGTGA TCGGGTGATT AATCTATCTC TCGACGGGCA ATGTCAGCCC CAACATATAT AA
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Protein sequence | MIALVTPLVF ENVIDRVLVS RSVSSLHVLG IALLTMAVFE PLFGYLRSWM YANLANKLNA ELSARLYAHL MALPLRYFNQ RQTGQITARV REMDQIRQFL AGSALTLILD LVFVGIFIAV LFAYAPFLTW LVLGSLVLYF VFWLAIGPTL RAKVTKEYET AADNTAFLTE SISGIETVKT NTLEPSFEKR WQHHLAGQLK AGFRARVVSI WAEQGIGLIQ KLTAALTLWW GVKLVLAGEL SPGELVAFNM LAGQVTQPIL RLAQVWQDFQ HTLIALRRVG DILYEPQEAG SGGLASIPSM RGEVTFNQVR FRYDTDAPEV LKNLSLTIKA GEFVGITGRS GSGKSTLTKL LQRLYVPTSG QVLVDGMDLA IADPVELRRN MSVVLQESCL FGGTIADNIR QCAPNASDEA IVQAAQLAGA HDFILDLPQG YNAQVGESGS RLSGGQRQRI ALARALITNP RILILDEATS ALDYESEAAI ISRLPEISQG RTVISIAHRL STLAHCDRVI NLSLDGQCQP QHI
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