Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Strop_1272 |
Symbol | |
ID | 5057725 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salinispora tropica CNB-440 |
Kingdom | Bacteria |
Replicon accession | NC_009380 |
Strand | + |
Start bp | 1433140 |
End bp | 1434246 |
Gene Length | 1107 bp |
Protein Length | 368 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 640473544 |
Product | D-alanine--D-alanine ligase |
Protein accession | YP_001158120 |
Protein GI | 145593823 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG1181] D-alanine-D-alanine ligase and related ATP-grasp enzymes |
TIGRFAM ID | [TIGR01205] D-alanine--D-alanine ligase |
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Plasmid Coverage information |
Num covering plasmid clones | 25 |
Plasmid unclonability p-value | 0.390278 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 21 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGACCACCC CAGGCAAGAT CCGCGTGGCG GTCGTGTTCG GCGGACGCAG CCCGGAGCAC GGCATTTCCT GTGTCAGCGC CGGTAGCGTG CTGGCGGCGC TCGACCCCGA CGAATACGAG GTCGTGCCGG TAGGGATCAG CCGTGCCGGT CAGTGGGTGC TGACCGGCAG CGATCCGGCC GAGCTCGCGA TCAGCGCCCG CCGGTTGCCG GAAGTCACCG CCGAGTCCGG CGCCGCCATC ATGCTCAATG CTGACCCGAG CCACAGCGGG CTGATGGTGC TCGACGCGAC CGCGGGGCCC CGGGCCCTCG CCGACGTGGA CGTGGTGTTT CCGGTCCTGC ACGGAGCGTA CGGGGAGGAT GGCAGCATTC AGGGGATGCT GGAGATGGCC GGCATCCCGT ACGTGGGGGC GAACGTCTTC GCCTCCGCCG CCGCCATGGA CAAGGAGTTC ACCAAGAAGC TCTGCGCCGC CGAGGGGATT CCGATCGGCC CGTACGTGGT GCTGCGCAGC GGCATGACCT TGACCGAGCA GGACAAGCAG CGCCTGGGTC TACCGGTCTT CGTCAAGCCC TCCCGGGCCG GCTCGTCCTT CGGGATCACC AAGATCAGCG ACTGGGCGGA GCTGGACGCT GCGGTCGCCA CCGCCCGGCA GATCGACTCC AAGGTCCTCG TCGAGGCCGC GGTTGTCGGC CGGGAGATCG AGTGCGGAGT GTTGGAGGGC GAGGCCGGTG GGGTGCCGGA AGCGTCCGTG CTCGCCGAGG TCCGGGTGGT CGGGGAGTAC GACTTCTACG ACTTCGAGGC GAAGTACATC GATGCCGAGT CCGCCTGTGA GTACGACATC CCCGCCGGTC TGTCGGAGCG GGTGACCCGC CAGGTCCAGG AGTACGCGGT CCGTGCGTTC ACCGCGCTCG ACTGCGCCGG GCTGGCTCGG GCTGACTTCT TTGTCACCCC GGAGTTGGAC ATCTATCTCA ACGAGATCAA CACGATGCCC GGCTTTACCC CGTCATCGAT GTTCCCGCGC ATGTGGGCGG CCTCCGGTCT GGAGTACCCG AAGCTGGTCA ACCGCCTTAT CCGTACCGCC CTTCAGCGCG GGGCCGGCCC GCGCTGA
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Protein sequence | MTTPGKIRVA VVFGGRSPEH GISCVSAGSV LAALDPDEYE VVPVGISRAG QWVLTGSDPA ELAISARRLP EVTAESGAAI MLNADPSHSG LMVLDATAGP RALADVDVVF PVLHGAYGED GSIQGMLEMA GIPYVGANVF ASAAAMDKEF TKKLCAAEGI PIGPYVVLRS GMTLTEQDKQ RLGLPVFVKP SRAGSSFGIT KISDWAELDA AVATARQIDS KVLVEAAVVG REIECGVLEG EAGGVPEASV LAEVRVVGEY DFYDFEAKYI DAESACEYDI PAGLSERVTR QVQEYAVRAF TALDCAGLAR ADFFVTPELD IYLNEINTMP GFTPSSMFPR MWAASGLEYP KLVNRLIRTA LQRGAGPR
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