Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr7_1382 |
Symbol | |
ID | 4257275 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-7 |
Kingdom | Bacteria |
Replicon accession | NC_008322 |
Strand | + |
Start bp | 1598856 |
End bp | 1601369 |
Gene Length | 2514 bp |
Protein Length | 837 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 638122016 |
Product | polysaccharide export protein |
Protein accession | YP_737438 |
Protein GI | 114046888 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG1596] Periplasmic protein involved in polysaccharide export |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 4 |
Fosmid unclonability p-value | 0.0357414 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGTTACAAC AATTCAAAAA ATACATCAAA GCGGTTCCCA AAACCGCAAT ATTAGTTGGC ATCACTGCCA CGATATTGAT GGGCACACAG GCGCAAGCTA TTACGCCCTC TCCGCAGATG ATAGAGCAAT TCAAACAACT ACCTAAGTCA GAGCAAGAAC GTTTAGCTCG CCAATACGGT ATTGATCCGT CAATGATCAC GGGGGCCTCA ACTACTGCTA CTGCTGTTGA AAACCCAACT GTAGTTACGC CACGAACGGA AAGTGGTAAT AACGTCATCG ATCAATCTGA GGACGATAAA CTTAACCAGG CAACCAAAAC GGAAGCTAAG GTTGAAGCGA TTGAAAGCAA AAAAGAAGAT CAGCTAAAAC GCTTTGGCTA TGACTTATTT GCTGGTTCTC CAAGTACGTT TGCTCCCGTT TCTGATGTAC CAGTGCCTGC TGAATACATG ATGGGTCCCG GTGATACCTT AAATGTGCAG TTTTTTGGTA AAGAAAATAA TCAGTTCACA TTAACCGTGG GCCGTGATGG CGCGGTTCAA TTTCCAAACT TGGGGCCTAT CTCACTAGTA GGCTTAACCT TTGCTGAAAC ACGCGAGTTA TTACAGCAAA AGATCAGCCA AAGCATGATA GGTATTGAGT CCAATATCAC TATGGGTGAG TTGCGTTCAA TCCGGATTTT TGTTGCCGGT GACGCTTACA AGCCTGGCTC CTATACTGTA TCGAGCTTAT CCACTATTAC CCAAGCCTTG TTTATCTCGG GTGGTGTGAA CGAAATTGGT AGCTTGCGTG ATATCCAATT AAAGCGCTCT GGTAAAACTA TTGGCCGTTT AGACTTGTAT GATTTATTGC TTCGCGGCGA TGCTTCGGGC GATATGCGAT TACAATCCGG TGATGTGGTC TTTGTTCCAT CTACAGGGGG CACTGTGAGT GTCATTGGCG AAGTGCGTCG CCCTGCCATT TACGAGCTTA AAAATAATGA GACCATGGCC GATGTGATTA ATATGGCCAG TGGCTTAAAC CCTGGTGCTT ATCCTAAAGC CAGTACTATC GAACGTTATA GTCGTGAAGC GGTAAAAACC GTGGTAAGCG TAGATTTAAC CGAAAATTCA GGCTTAAGTA CGTTAGCAAA AAATGGTGAC TTACTTAATG TGCGCTCAGC TTCAAGCCGT ATTGATAATG CCATTACAGT GTCTGGTGCT GTAATACGCC CTGGTAAATA TCAATGGACA AATGGTCTAA CAGTTGCCGA TTTATTGCCT TCAATTTGGG GGGATTTAAC CATCTCCGCC GACTTGGATT ACAGTCTACT CGTTCGAGAA ATCAACCAAC GGGGTGATAT TGAAGTTGAG CGTATCAACC TCGGGCGTGC CATCGGTGAA CCAAAATCGC ATTATAATCT TGCGCTAAAG CCACGAGATT CAGTCATCGT ATTTGACTAT GCAGATCGTG AGGAGCTGCT TAAGCCCATT ATTAAAAAGT TAAAAGAGCA AAGCCGTTTT GGTGATGCAG CGAAGCTAGT TAATATCAAT GGTAATGTGC GTTTTCCTGG CCAGTATCCA ATAACGGTTA ATGCCGATGT TAAAGATTTA CTTATAGCTG CAGGCGGGCT AGAAGAAGGT GCATATACCT TATCTGCAGA GCTCACTCGC CAACAAGTGT CTGAGCAAAA CGGTGTCACA GTAGAACATG TGCAGCTTAG TTTAGACCGC GTTATGCAAA ATGATCCGGC TGCCAATATC AAACTGCAAA GCCGTGACAT ATTAACCGTA CGTACGTTGC CAGACTGGCA AGAAACTCGC TGGGTCACCA TTAAAGGTGA AGTCAAATTC CCCGGTACTT ACAGTATCCA GCGCGGCGAA ACCTTAAAAC AAGTGCTTGC TCGTGCAGGG GGGATGACGA GTGATGCTGC ACCCCGCAGT GCAGTCTTTT TGCGCAAATC TATTCAAGAG AAAGAACAGC AAGAGCTTGC TAAGCTTGCC GATGAGTTGC GCCGTGAGAT TGCAGCAAAA GCCTTAACCA AAGACACGCC TACCGTTGGT TATAACGATG CACAAATGAT GTTAAATCAG TTGGAAAACG TTAAAACGGT TGGTCGTTTA GTTGTCGATA TCAATGCGAT TGAATTAGGT ATCGAAAGTG CCGATTTAAT GCTAGAAGAT GCAGATGCAC TCTACATTCC ACCTGCTAAC CAGACGGTTT CTGTTATGGG CCAAGTGCAA CACCCAAGCA CTCATCGCTT TAAAACTGGT CTAACCTACG AACAGTATCT AGCGTTATCC GGTGGGGCAC GTAAACGCGC TGACGAATCA CGCACTTATA TATTAAAAGC CGATGGCTCG GTACAAATGC CTGAATCTTC ATTGTGGTTT ACTGGCGGTA GCTCAATGGA ACCAGGTGAC ACCATAGTTG TACCATTGGA TACCGAATAC AAAGATAATC TAACGTTGTG GACTCAAGTA ACGAGCATTA TCTACAACAC CGCCGTCGCA GTATCCGCAA TATCGGGGAT TTAG
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Protein sequence | MLQQFKKYIK AVPKTAILVG ITATILMGTQ AQAITPSPQM IEQFKQLPKS EQERLARQYG IDPSMITGAS TTATAVENPT VVTPRTESGN NVIDQSEDDK LNQATKTEAK VEAIESKKED QLKRFGYDLF AGSPSTFAPV SDVPVPAEYM MGPGDTLNVQ FFGKENNQFT LTVGRDGAVQ FPNLGPISLV GLTFAETREL LQQKISQSMI GIESNITMGE LRSIRIFVAG DAYKPGSYTV SSLSTITQAL FISGGVNEIG SLRDIQLKRS GKTIGRLDLY DLLLRGDASG DMRLQSGDVV FVPSTGGTVS VIGEVRRPAI YELKNNETMA DVINMASGLN PGAYPKASTI ERYSREAVKT VVSVDLTENS GLSTLAKNGD LLNVRSASSR IDNAITVSGA VIRPGKYQWT NGLTVADLLP SIWGDLTISA DLDYSLLVRE INQRGDIEVE RINLGRAIGE PKSHYNLALK PRDSVIVFDY ADREELLKPI IKKLKEQSRF GDAAKLVNIN GNVRFPGQYP ITVNADVKDL LIAAGGLEEG AYTLSAELTR QQVSEQNGVT VEHVQLSLDR VMQNDPAANI KLQSRDILTV RTLPDWQETR WVTIKGEVKF PGTYSIQRGE TLKQVLARAG GMTSDAAPRS AVFLRKSIQE KEQQELAKLA DELRREIAAK ALTKDTPTVG YNDAQMMLNQ LENVKTVGRL VVDINAIELG IESADLMLED ADALYIPPAN QTVSVMGQVQ HPSTHRFKTG LTYEQYLALS GGARKRADES RTYILKADGS VQMPESSLWF TGGSSMEPGD TIVVPLDTEY KDNLTLWTQV TSIIYNTAVA VSAISGI
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