Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_0783 |
Symbol | |
ID | 4921979 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | - |
Start bp | 897390 |
End bp | 898067 |
Gene Length | 678 bp |
Protein Length | 225 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 640162316 |
Product | pseudouridylate synthase |
Protein accession | YP_001092914 |
Protein GI | 127511717 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.202814 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 5 |
Fosmid unclonability p-value | 0.00996609 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGTCTGATT TCGTGTATGC ACCGCCCACC GAGCCCTGGC TCGAGATCCT CCACGAGGAT AAAGATATTC TGGTGGTCAA CAAGCCCTCA GGCCTACTTT CCGTGCCTGG CCGTGACCCC GCCTATTATG ACAGCGTCTA CACCCGCGTC CTGCGCGATC ACCCCAACGC CCAGATAGTT CACCGTCTGG ATATGGCGAC TTCAGGCATT ATCGTGGTGG CCCTCAGACG CAGCGCTGAG CGGGAACTTA AGCGCCAGTT TCGCGATCGC GAGACCCATA AGATCTACTA TGCCCGGGTC GCCGGTCATC TGAAGGCGGA GCAAGGTAGC GTCGATTATC CGCTGATCTG CGACTGGCCC AACCGCCCGA AACAGAAGGT GGATCATCAA ATCGGTAAGG CATCTAAGAC CCTGTTCGAG GTCATCAGCC GCGCCAAGCG CTCGACCCTG GTAAAGCTCA CGCCGATCAC AGGTCGCTCT CACCAGCTGC GCGTACATAT GATGGCCATA GGGCACCCCA TCCTGGGCGA TAACTTCTAC GCCGACCCGC TGGCCAAACG CCTGGCACCG CGTCTGCTGC TGCATGCCCA GTCGCTGAGC CTGACCCATC CCTACAGCAA ACAGCCTATG ACCTTCAGCA CGCCAATCCC CTTCACGGAT GTCACCGAGG AGCAATAG
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Protein sequence | MSDFVYAPPT EPWLEILHED KDILVVNKPS GLLSVPGRDP AYYDSVYTRV LRDHPNAQIV HRLDMATSGI IVVALRRSAE RELKRQFRDR ETHKIYYARV AGHLKAEQGS VDYPLICDWP NRPKQKVDHQ IGKASKTLFE VISRAKRSTL VKLTPITGRS HQLRVHMMAI GHPILGDNFY ADPLAKRLAP RLLLHAQSLS LTHPYSKQPM TFSTPIPFTD VTEEQ
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