Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sde_0292 |
Symbol | |
ID | 3965431 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharophagus degradans 2-40 |
Kingdom | Bacteria |
Replicon accession | NC_007912 |
Strand | - |
Start bp | 362987 |
End bp | 363718 |
Gene Length | 732 bp |
Protein Length | 243 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 637919354 |
Product | short chain dehydrogenase |
Protein accession | YP_525768 |
Protein GI | 90019941 |
COG category | [R] General function prediction only |
COG ID | [COG0300] Short-chain dehydrogenases of various substrate specificities |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 30 |
Plasmid unclonability p-value | 0.640514 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 6 |
Fosmid unclonability p-value | 0.000719162 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGAGTATTG ATATTAACGG CAAAATTGCA CTTGTTACCG GCGCTAACCG AGGCATTGGT AAAGCCATTG TCGATTCACT AATAGAGCAT GGCGCCAGCA AGGTTTATTT GGCCGTGCGC AACCCCGAGT CTACCGTTGA ACTGGCAAAA CAATACGGCG ATAAAGTGGT AACACTGCAG GCAAACGTTG GCGACGACGC ATCGATTAGC GCATTGGCTC AAGCGGCGAA AGATGTAAAT ATTGTGATAA ACAACGCCGG CGTAGTGCAG CCAGCCGACT TACTTAGCGC AGACGCCTTT GCGGCACTTA AGCACGAGCT AAACGTTAAC ACCTACGGTT TATTGCGCGT TGCGCAGGCT TTTGCACCGG TATTACAACA AAACGGGGGC GGCGCATTTG TGCAGCTTAA TTCGGTTGCC TCTATTAAAA ACTTCACGCC CTTTACCACC TACAGCGCCT CTAAAGCCGC AACTTACTCC ATTACACAAG GCCTTAAAGA TGTAATGGCT CCACTGGGCA TTGCTGTACT AAGCGTACAC CCTGGCCCCA TTGCTACCGA CATGGGTGAT CAAGTGGGCA TGACAGAAGT TGCAGAACCT GCGAATGTGG TGGCAGAAGG TATAGTTAGC GCGCTTAAAG CTGGCGACTT TCATTTGTTT CCAGACACCA TGGCCAAACA ATTTGGCGAT GCCTATGATA GTTATGCGCA GGCAATTATT AACGGCCAGT AA
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Protein sequence | MSIDINGKIA LVTGANRGIG KAIVDSLIEH GASKVYLAVR NPESTVELAK QYGDKVVTLQ ANVGDDASIS ALAQAAKDVN IVINNAGVVQ PADLLSADAF AALKHELNVN TYGLLRVAQA FAPVLQQNGG GAFVQLNSVA SIKNFTPFTT YSASKAATYS ITQGLKDVMA PLGIAVLSVH PGPIATDMGD QVGMTEVAEP ANVVAEGIVS ALKAGDFHLF PDTMAKQFGD AYDSYAQAII NGQ
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