Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RoseRS_1430 |
Symbol | |
ID | 5208384 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Roseiflexus sp. RS-1 |
Kingdom | Bacteria |
Replicon accession | NC_009523 |
Strand | - |
Start bp | 1741028 |
End bp | 1743397 |
Gene Length | 2370 bp |
Protein Length | 789 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 640595041 |
Product | DNA topoisomerase I |
Protein accession | YP_001275778 |
Protein GI | 148655573 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0550] Topoisomerase IA [COG0551] Zn-finger domain associated with topoisomerase type I |
TIGRFAM ID | [TIGR01051] DNA topoisomerase I, bacterial [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.000308935 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 2 |
Fosmid unclonability p-value | 0.00155997 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
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Sequence |
Gene sequence | ATGGGCGAGA AACTGGTTAT TGTCGAGTCG CCAGCCAAGG CGCGCACCAT CCAGAAGTAC CTCGGTCAGG GGTATCGGGT CGAGGCGTCG ATGGGGCATG TTCGCGATCT GCCGAAGAGC GACCTTGGCG TTGATCTCGA TGCGAACTTT ACGCCGGTGT ATGAGGTTTC GCCGGGCAAG GAGAAAATCA TTGCCGCGCT GCGCAAATCG ATTCGCCAGG CGGATGCCGT GTATCTGGCG ACCGACCCGG ACCGCGAGGG GGAAGCAATT GCCTGGCATA TCACCGAGGC GGCGAAAATT CCGCGCGGAA AGCCAGTGTA CCGGGTTGTC TTCACCGAAA TTACGCCTGG TGCAGTGCGC AGCGCCATGG CGTCGCCGCG CGACATTGAT CGGCGGTTGG TCGATGCGCA GCAGGCGCGT CGTGTGCTGG ATCGTCTGGT GGGCTACAAA CTGTCGCCGC TCCTGTGGGA GAAAGTGCGA CGCGGGTTGT CCGCCGGGAG GGTGCAATCG GTTGCAGTAC GCCTGATCGT TGAGCGTGAA CGCGAGATCG AGGCATTCGT TCCGCAGGAA TACTGGACAA TCGAAGCCGA TCTGCTCAAA CAGGAAGCGC GCGATCCGTT TCGCGCCGTG CTGATCGAGC GTGCTGGCAG GAAACTCGAA AAGTTCGACA TCGGCTCAGG TGAGCAGGCG CAGGCGATCA TTGTCGATCT GGAAGGCGCC GCGTATATCG TGCGCAAGGT GACGCGCCGT GACAAACGAC GCAGCCCGCC GCCGCCGTTC ACTACCAGCA CCCTTCAGCA AGAAGCCGGG CGCAAACTCG GCTTTTCCGC AAAACGCACT ATGGCAGTGG CACAACAGTT GTACGAAGGG GTGGACATTG GCGGCGATGA GGGTTTGGTT GGTCTTATCA CGTATATGCG CACCGATAGC GTGAATGTAT CGCGCGAAGC GCAGGAAGAA GCACGCATCG TTATTCGCGA TCGGTACGGC GAAGCATACC TGCCGCCCAA ACCGCCGGTT TACAAAACGA AGACCAAAGG AGCGCAAGAG GCGCACGAAG CCATCCGTCC AACCCTCAGC CGGCGCACGC CGGAACAGGT GCAACCCTAC CTGACGAGCG ATCAGTACCG TCTCTATGAG TTGATCTGGA AACGGTTTGT CGCCAGCCAG ATGGAGGCGG CGGTGTTCGA CAGTACGACG GTGGACATTG GCGCAGGGCG CGGGATCGAG CGCAGTGCGG GCAACGATCC GTACACCTTC CGAACCACCG GTTCCGTCCT GAAGTTCCCC GGATTCCTGG CGGTCTACAA CGTCAGCCTG GACGAAGGCG AGGAGGATGA GGATAGCGAA CGGCGATTGC CGCTGCTGGC GGAGGGTGAT GTGCTCGCGC TGGTGCAACT GTTGCCGGTG CAGCACTTCA CCGAACCGCC GCCACGCTTC ACCGAAGCCA GCCTGGTGAA GGAGTTGGAA CGTCTCGGCA TCGGACGTCC TTCCACGTAT GCACCCACCA TCTCGACGAT CATCGAGCGT GAGTACGTTG AACTTGCGGA TAAGAAACTC GTGCCGACTA CCCTTGGCAG AGTTGTGACC GACCTGTTGG TGCAGCATTT CCCGAGCATC GTCGATTATG GCTTCACCTC GGAAATGGAG CAGCAACTCG ATGACATCGC TGAAGGGGAG AAAGAGTGGA CGCCAGTATT GCGCTCCTTC TACGAACCGT TTGAGCAGAA ACTGGCGGAC GCGCAGCGCA GTATGCGCAA TGTCAAGCGC GAGGAGATCC TGACCGACCT GACCTGCCCA AAGTGCAGTC AGGGACAGCT GGCGATCCGG TTCGGCAAGA ATGGCGAATT CCTGGCATGC AACCGCTACC CGGAGTGCGA TTTCACCAGT GACTTTCATC GCGACGGCGA GGGACGCATT GTGATCGATG CGCCAGCCGC GCCAGAAGTG AGTGACGTCA TCTGTGAGTT GTGCGGACGA CCAATGGTGC TGAAGAAGAG CCGGTTCGGT CCATTCCTGG GATGCAGCGG CTACCCGGAG TGCAAAAATA CCCGACGCCT CGACAAACAG GGGAAGCCGG TGCCGCCGCC AAAGGCGACC GGCGTGACCT GCCCGAAGTG TCGTCAGGGG GAATTGCTGG AGCGGCGCGG CAAGTTTGGT CGTCCGTTCT TCGGATGCAG TCGTTATCCG AAGTGCGACT ACCTGGTGAA CTCGCTCGAG GAAGTTGCAA ACTACACGCC CGAGAATAAC GCGCCAATGG AGGCGAAGGC AGAGGAACAA CCTGCAACGA AGCGAACAAA GACATCCACC GGCAAAAAGC GGGCAAAAAC AACTGCACCT GGGAGCGGAA CACCGAACGT GGAAGATTGA
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Protein sequence | MGEKLVIVES PAKARTIQKY LGQGYRVEAS MGHVRDLPKS DLGVDLDANF TPVYEVSPGK EKIIAALRKS IRQADAVYLA TDPDREGEAI AWHITEAAKI PRGKPVYRVV FTEITPGAVR SAMASPRDID RRLVDAQQAR RVLDRLVGYK LSPLLWEKVR RGLSAGRVQS VAVRLIVERE REIEAFVPQE YWTIEADLLK QEARDPFRAV LIERAGRKLE KFDIGSGEQA QAIIVDLEGA AYIVRKVTRR DKRRSPPPPF TTSTLQQEAG RKLGFSAKRT MAVAQQLYEG VDIGGDEGLV GLITYMRTDS VNVSREAQEE ARIVIRDRYG EAYLPPKPPV YKTKTKGAQE AHEAIRPTLS RRTPEQVQPY LTSDQYRLYE LIWKRFVASQ MEAAVFDSTT VDIGAGRGIE RSAGNDPYTF RTTGSVLKFP GFLAVYNVSL DEGEEDEDSE RRLPLLAEGD VLALVQLLPV QHFTEPPPRF TEASLVKELE RLGIGRPSTY APTISTIIER EYVELADKKL VPTTLGRVVT DLLVQHFPSI VDYGFTSEME QQLDDIAEGE KEWTPVLRSF YEPFEQKLAD AQRSMRNVKR EEILTDLTCP KCSQGQLAIR FGKNGEFLAC NRYPECDFTS DFHRDGEGRI VIDAPAAPEV SDVICELCGR PMVLKKSRFG PFLGCSGYPE CKNTRRLDKQ GKPVPPPKAT GVTCPKCRQG ELLERRGKFG RPFFGCSRYP KCDYLVNSLE EVANYTPENN APMEAKAEEQ PATKRTKTST GKKRAKTTAP GSGTPNVED
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