Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pden_0424 |
Symbol | |
ID | 4579470 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Paracoccus denitrificans PD1222 |
Kingdom | Bacteria |
Replicon accession | NC_008686 |
Strand | - |
Start bp | 394384 |
End bp | 396312 |
Gene Length | 1929 bp |
Protein Length | 642 aa |
Translation table | 11 |
GC content | 71% |
IMG OID | 639767741 |
Product | TPR repeat-containing protein |
Protein accession | YP_914234 |
Protein GI | 119383178 |
COG category | [R] General function prediction only |
COG ID | [COG4785] Lipoprotein NlpI, contains TPR repeats |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 17 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGATCGCAG CCGGGCACGC CGCGCCAGCC GCGGCGTTGC CCATCGGCGC TGCGGCGGCT AGGGTCGCTG GCGCAATCGC CGAGACATGG GCCCAAGCCG TGACCACAAG ACTGATCCCG CTGGCGCTGA TCGCGCTGCT GCCGCTGCTG CAAGGGCCCG CCATGGCCGC GCCTTCGCTG GCCCAGGCCC AGGACCCCGC CGCCGGGAAC AGCGAGCGGC CGGCGCATCG CCCGGTCGAT GCCGCGCCGG ACCTGCGCGG CCTCTCCGGC CCCTATCTGG CCGCGCGCAT GGCCGCGATC CAGAACGACT ATTCCGTGGC CGCCCGCTAT TACCTCCAGG CGCTGGCCCA TGACGACAGC GACCCCTTCC TGCAAGACAG CGCGCTGGTC GCGCTGATCT CGGCCGGCGA GATGGAGCGT GCCGCCGCGC TTTCCGGCAC CATGTCCGAC CAGGGCCGCG CCACCGAGCT GGCCCGGCTG GTGCAGCGCG CCGAGATGGC CCGGGCCGGG CGCTGGGACG CGCTGATCGA GGCCATCGAC TCCGCGCCCT CGCCCGGGGG CAACGCCACC CCCGGCGGCG GCATTCTGGT CGACGGCATG ATGCGCGCCT GGGCGCTGCT GGGCGCCGGA AAGGCCGGCG AATCGCTGAC CGCGTTCAAG AAGCTGGCCG AATTGCGCGG CGCAGCGCCG ATGGTGAACT ACCACCTGGC CCTCGCCAAG GCGCGGGTCG GCGATTTCGA GGGCGCCGAG CTTCTGCTGG CCGATCCGGC CACCGGCGCG CATATCCTGG GCGTCATCGC CCGCGCCCAG GTGCTGTCGC AACTGGAACG CAACCGCGAC GCCATCGCCA TGCTCGAGGC GACGCCCGGC TTTGCCGAGG AGCCCTATCT GGTGGCGCTG CGCGACCGCA TGAAGCGGGG CGAGACGCTG CCCTTCGATT CGGCGCGCGG CCCCGCCGAC GGCATGGCGC AGGTATTCCT GACCTTCGGC TCGGTGCTGG CGACAAGCGA CGAGCCCGAT CCGCTGGCGC TGATCCATGC CCGGCTGGCC GAATACCTGG CCCCCGACCT GGGCGAGGCG CGGCTCTTGT CCGCCCAGCT CCTGCAGGGC TTCGGCCAGT TCGACCTGGC CGAGCACGAA TTCGAGGCCC TGCGCGAGCT TGGCGACATG CGGCCCGTCG CCGAACTGTC GCGCATCGAC GCCCTGGCCC GCGCCGAGCG GCTGAACGAT GCCGAAAAGG CCGCGCTGGC GCTGACCGCC GCCCATCCCG AACTGGCCCA GGGCTGGATC GCGCTTGGCG ACATGCTGCG CCAGCAGGAC AAGTTCGGCC AGGCGGTCCC GGCCTATGAC AAGGCGCTGA GCCTGATCGG CGACAAAATC CCCGAGGCGC GCTGGTTCCC GCTTTACGCC CGCGGCATTG CGCTGGAACG GTCGGGGCAG TTCTCCAAGG CCGAGGCGGA TTTCCGCGCC GCGCTGAAGA TCCGCCCGGA TTCGGCGCAA GTGCTGAACT ATCTGGGCTA CAGTCTCGTG GACCGCAGCG AAAAGCTGGA CGAGGCGCTG GCGCTGATCC AGCGCGCGGT CGAGCTGCGC CCGGACGACG GCTATATCCT CGATTCGCTG GCCTGGGCCT ATTTCCGCCT CGACCGCTAT CCCGAGGCCG TGGCGCCGAT GGAGCGCGCC GTGGCGGCCA TGCCGGGCGA TCCGCTGGTC AACGACCATA TGGGCGACAT CTACTGGATG GTCGGCCGCA AGCGCGAGGC CGAGATCCAG TGGCACCGCG CCCTGTCGCT GAAGCCGGAA ACCGAGGCCG AGGTGCACCG CATCCGCGCC AAGCTGGAAC GCGGCCTCGA TGCCGTGCTC GAGGAGGAAA AGGCCAACGG CGGCAAGCTG CCCGAGGTCC GCGCCCCGGA ACCCGCCAGG GCCGACTGA
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Protein sequence | MIAAGHAAPA AALPIGAAAA RVAGAIAETW AQAVTTRLIP LALIALLPLL QGPAMAAPSL AQAQDPAAGN SERPAHRPVD AAPDLRGLSG PYLAARMAAI QNDYSVAARY YLQALAHDDS DPFLQDSALV ALISAGEMER AAALSGTMSD QGRATELARL VQRAEMARAG RWDALIEAID SAPSPGGNAT PGGGILVDGM MRAWALLGAG KAGESLTAFK KLAELRGAAP MVNYHLALAK ARVGDFEGAE LLLADPATGA HILGVIARAQ VLSQLERNRD AIAMLEATPG FAEEPYLVAL RDRMKRGETL PFDSARGPAD GMAQVFLTFG SVLATSDEPD PLALIHARLA EYLAPDLGEA RLLSAQLLQG FGQFDLAEHE FEALRELGDM RPVAELSRID ALARAERLND AEKAALALTA AHPELAQGWI ALGDMLRQQD KFGQAVPAYD KALSLIGDKI PEARWFPLYA RGIALERSGQ FSKAEADFRA ALKIRPDSAQ VLNYLGYSLV DRSEKLDEAL ALIQRAVELR PDDGYILDSL AWAYFRLDRY PEAVAPMERA VAAMPGDPLV NDHMGDIYWM VGRKREAEIQ WHRALSLKPE TEAEVHRIRA KLERGLDAVL EEEKANGGKL PEVRAPEPAR AD
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