Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dfer_3988 |
Symbol | |
ID | 8227584 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dyadobacter fermentans DSM 18053 |
Kingdom | Bacteria |
Replicon accession | NC_013037 |
Strand | + |
Start bp | 4837440 |
End bp | 4838315 |
Gene Length | 876 bp |
Protein Length | 291 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 644931830 |
Product | transcriptional regulator, AraC family |
Protein accession | YP_003088357 |
Protein GI | 255037736 |
COG category | [K] Transcription |
COG ID | [COG2207] AraC-type DNA-binding domain-containing proteins |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.00119398 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 0.630817 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAACCGC ATTTTCATAA GGTCCCGATT CCCTCAAGGA CGTCGTTCAG CATACGCCAT GACAAAGACT CCGGCTTTGG CACGGTTTGG CATTACCATC CCGAGCTGGA ACTGCATTAT CTGGTCAAAG GCAAGGGGGT GCGGTTTGTC GGGGACAATA TCAGTAACTT TTCGGACGGC GAGCTGATAC TGCTCGGCGA GAACTTGCCA CACACCTGGC TTGTGGAAGA AGGCGCCAGC AATACCGCGG TGGAGGCGAT CATCATTCAC TTCCTGCCCA ACTGCCTGGG GAGCGAGCTG CTGCTGCTGC CGGAGGCGTA TCAGATCCCG AAATTGTACG AGAGGGCCAA AAGAGGCCTG TTGATCACCG GCGAAGCGAA GGAAAAGGTG ATCCGCCTGA TGCATTCGGC GGTAAATGCC GAAAATCTTG ACCGGCTCAT CGCCTTGCTA TCCATCCTGA AAATTCTTGC GGAAGCAAGT GAATACGAAA CGATCGCTTC GGCGCACGCA TTCTACAAAT CCAACGACGC CGAAACACTT CGGTTAAATA AAATTTACGC TTACACGCTT TCCAACTACC GCAACGACAT TTCATTGCAG GATGTAGCGT CGATCGCCAA CCTGGGCATT ACTTCTTTTT GCAGGTATTT TAAGTTGATG ACCAAGAAAA CATATAATGA TTTCCTTGTC GAGATTCGGA TCAGCCAGGC GTGCCGGTTT CTGATCGAGG ACAAAATGGC GACTGAAGTG ATTTGTTTCG AGTGCGGCTT CAACAATGTT TCCAACTTTT ACCGGCATTT CAAGAAGGTT ACCGACATGA CGCCATTGGA ATACAAGCGG AAATACCTTT ACAAAGCCGC ACCCGAAATG GTTTGA
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Protein sequence | MKPHFHKVPI PSRTSFSIRH DKDSGFGTVW HYHPELELHY LVKGKGVRFV GDNISNFSDG ELILLGENLP HTWLVEEGAS NTAVEAIIIH FLPNCLGSEL LLLPEAYQIP KLYERAKRGL LITGEAKEKV IRLMHSAVNA ENLDRLIALL SILKILAEAS EYETIASAHA FYKSNDAETL RLNKIYAYTL SNYRNDISLQ DVASIANLGI TSFCRYFKLM TKKTYNDFLV EIRISQACRF LIEDKMATEV ICFECGFNNV SNFYRHFKKV TDMTPLEYKR KYLYKAAPEM V
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