Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dde_1447 |
Symbol | |
ID | 3756117 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Desulfovibrio desulfuricans subsp. desulfuricans str. G20 |
Kingdom | Bacteria |
Replicon accession | NC_007519 |
Strand | - |
Start bp | 1471401 |
End bp | 1473137 |
Gene Length | 1737 bp |
Protein Length | 578 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 637782325 |
Product | pseudouridine synthase, RluD |
Protein accession | YP_387941 |
Protein GI | 78356492 |
COG category | [H] Coenzyme transport and metabolism [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0237] Dephospho-CoA kinase [COG0564] Pseudouridylate synthases, 23S RNA-specific |
TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family [TIGR00152] dephospho-CoA kinase |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTTCGCAT TTAAACTTTA TCCGGATATG TGTAGTATGG TGAAAGATTT TCGTCAAGGA CAACATGAAA AATTGACACA ACACACTGAA AATAAAAACA CTTCTTCCGG AAAAACCCTG CTTGACTGCA TGGTCTCCCC GCAGGCCGCG GGTGAACGTG CCGACAGGTT TATTGCCGCG GCGCTGGCCG GAGACGCCAT ATCGCGCGGA AAAATCCAGC GCGCCATAAG CGACGGACAG CTTCTGATTG ACAATACTGT CTGCACCAGC CCGAAGACAA AACTTAAAAG CGGACAGCAC ATTGTTTTCA GCATGGAAGC CCCTGCCGCC TGTGTCTCGC CCGAAGAAGG CGAGCTGGAG GTACTCTACC GCGATGCGCA CATGCTGGTA ATCAACAAGC CTGCCGGATT GACGGTACAC CCCGCCCCGA GTTGCCCCGA AGGCACACTG GTACACAGAT TACTGCACCA CTTTCCCGAA CTGGAGGCAC AGGAAGGATT TCGTCCGGGA ATCGTGCACA GAATAGACAA GGATACCAGC GGCCTGCTGT TGATCGCCCT GACGGAAAAG GCACGGCTGG CACTTTCCGA CGCTTTTGCC GGACGCCGGA TACACAAAGA ATATCTGGCA CTTGTAAAAG GCATTCCGGA AGGCGACAGC GGTGAAATTG ACGCACCCGT AGGCCGGCAT CCCACACATA AAACCCGCAT GGCCGTCGTA CGCGGCGGTC GCGAAGCCCT TTCCACATGG CGGGTGCTGC TCGCCGACCC CCATGGCGGT GGCGGAACAG GCTGGACGCT TGTGGCGGTG CGTATTCATA CCGGCCGGAC TCATCAGATA CGCGTCCACA TGCAGCATAC AGGACACCCG TTATGGGGCG ATGCACTTTA CGGCGGTATG CCCGGCAGAG AAGAACTTCA GACCACACCG GCTCTGGCGC AGACGGCAAC CCGCCAGATG CTGCACGCAT GGAAAATATC CTTCGACCAT CCGGTCACCG GAGCCCCCAT GCAGTTCACC CTGCCACCCC CTGCCGACTT CGGCACACTT ATCCGCGATC TGGGCTCGCG CTGCCAGCGT GTGGTCATCA CCGGCATGCC CGGCTGCGGC AAGTCTGCCG TGCTGGGGCT GCTGCGCGAC CGCGGCATAC CCGTATGGAG TGCCGACGCC TGTGTCGCGT CGCTCTACGC CGCAGGCGGC GACGCGTGGC ACGGCCTGAG GGGCAGGTTC GGAGACCGCT TTGTACCGGA CGAATCTTCT CCCGTGGACA AACAGGCCCT GCTAAAAGCC ATGCAGACCG ATGCGGCCAT ACGGCGCGAA GTGGAAGACA TAGTTCATCC GGCTGTACGC CATAATCTGG AACAATTCTG GCTGGCACAC ACCGGTGCCG CGCTGGCCGT GGCAGAAATA CCTCTTTTTC TTGAAACAGG CTGGAAAAAA GAAGCCGACG TGCTGGTGGG CATATTCACC CCGATGCACA TGCGGCAGCA GCGTCTGCGG GAAAAACGCG GATGGACCGA CGCAACCATA GCGTCCATGG ATGCATGGCA ATGGCCGGAA GCGGACAAAA TGCGCGCCTG CGGCATGATT CTGGACAATT CCGGTCCGGA GGCAGAACTG CCCCGCAAGA CGGCGGCGCT TGCCGCACAG CTGGCAGTAC TGCGCATGCA CAGACTGGAC AGACTGGAAG CCCGCGCCAG AACACTCTGG ACTGTTCCAC CCGGCGGGCG GAAGTGA
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Protein sequence | MFAFKLYPDM CSMVKDFRQG QHEKLTQHTE NKNTSSGKTL LDCMVSPQAA GERADRFIAA ALAGDAISRG KIQRAISDGQ LLIDNTVCTS PKTKLKSGQH IVFSMEAPAA CVSPEEGELE VLYRDAHMLV INKPAGLTVH PAPSCPEGTL VHRLLHHFPE LEAQEGFRPG IVHRIDKDTS GLLLIALTEK ARLALSDAFA GRRIHKEYLA LVKGIPEGDS GEIDAPVGRH PTHKTRMAVV RGGREALSTW RVLLADPHGG GGTGWTLVAV RIHTGRTHQI RVHMQHTGHP LWGDALYGGM PGREELQTTP ALAQTATRQM LHAWKISFDH PVTGAPMQFT LPPPADFGTL IRDLGSRCQR VVITGMPGCG KSAVLGLLRD RGIPVWSADA CVASLYAAGG DAWHGLRGRF GDRFVPDESS PVDKQALLKA MQTDAAIRRE VEDIVHPAVR HNLEQFWLAH TGAALAVAEI PLFLETGWKK EADVLVGIFT PMHMRQQRLR EKRGWTDATI ASMDAWQWPE ADKMRACGMI LDNSGPEAEL PRKTAALAAQ LAVLRMHRLD RLEARARTLW TVPPGGRK
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