Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cmaq_0090 |
Symbol | |
ID | 5710300 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Caldivirga maquilingensis IC-167 |
Kingdom | Archaea |
Replicon accession | NC_009954 |
Strand | - |
Start bp | 107368 |
End bp | 109182 |
Gene Length | 1815 bp |
Protein Length | 604 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 641274593 |
Product | glycoside hydrolase 15-related |
Protein accession | YP_001539934 |
Protein GI | 159040682 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG3387] Glucoamylase and related glycosyl hydrolases |
TIGRFAM ID | [TIGR01577] oligosaccharide amylase |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 0.33989 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 38 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACGGAGA CGGTTTATGA GCAGAGTATT GTAGGTAATG ATAGTATGCT TGCTGTTATT GGCGGTAGAG GGGAGTTAAG GTACTTGTTT TACCCAACGA AGTCATTTCC ACAGAACATT CACTCCTCAT TACCTGGAAT ATATAGGAGG GGCTACTTCA GTTGGTTAAC GGATTGGAGT GATATTAAAC AGAGGTATGC TGCCCCAGGG ATCTTGGAGA CCGTGTTCAA GAGTGGGGAT GCTTCGGTTA AGGTAATGGA CTTCGTACTC CATAGTGAAA GTGTACTTAT TAGGAGGTTT GAATTCAGTA TACCGGGTGA ATTCAGCTTC ATATACTATA CTTCACCTCA ATTATGGGAA ACCCACAATG CTGATGCAGC TTACTTTGAT GAGAGGTATG GCGCCATAGT AGACTATAAG AGGGGACTCA CCCTAGTGGT CTCAGGTGAT AGGATACCTA ATGAGTATCA GATTGGTCAA TTAGGCGCCG ACTCAGATGC GTTCACTGAC GCCTACGATG GTAGACTCAA CATGAATAAA CTAAGCATAT ATGAGGGCTT CAGGGGAGTT AACTTCGCAT TACTGTGGAG GCTTAGGGAT AATGAGACAT TAACCATTTA CTTTATCCTA GATAAGAGCG AGGAGGCTGC ATTAAGGGAA TTAGCCAAGA TTAAATCAAT GGATTGCTAC ATCTTAAGCC ATAGCGTTGC TGAGCATTGG GAGGGTTGGA TTAATAAGAT TAAGTTAAAT GGAGTTATTA GTGAGGAAAT GATTAAGCAC TCAGCGTACG TAATTAAGAT GCTTCAAGAC TCAGAGGGAG CTTTCATAGC GGCACCAACA TTATGGCCTG ATTACAGGTA TTGCTGGCCC AGGGATGCGG CTTACTCAGC TATGGCGTTG GATATTCTTG GTTACCATGA TGAAGCCTTT AAATTCATTA ATTGGGTGGT TAAGTCACAG GGGGAGAACG GGGCCTTCTA CCAAAGGTAC TACGCTGAGC CTGGACTTAA GGCGCCATCA TGGTCCTTTC AAATAGATGA AACAGCCTCA GTGGTGCTTG CAACCTACGT TCACTTTAAG TTAACTCTAG ATAGGCAGTT TCTAAAGAAT GCGTGGGTAA TGGTTAGGAA GGCTGCTGAG TATTTGGCGG CTAACGTAAG TGATGATGGT TTAACAACAC CCACCGTTGG GCCCTGGGAG GAGCACTTAG GTGTTCATAC TTACACCAAT GCCTCAGTGT ACGCCGCTTT ATCATCGGCA TCATACTTAG CCGGTGAAAT AGGTGATAGA AATAGGGCTG TGGAGTGGGG TAGGTATGCT TCAGTTATTC GTTCAACTAC ACTTAATCAG GCATGGAATG GTAGTTTCTT CATCAAAATA ATTAAACCAA GATTCAATAT ACCCGATTCA GCAACGCTTG GCTTAGTTTT CCCATTCAAT ATGGTTAACG TGAATGATGA CAGGGTGAAG ATGAATGCTG AAACCATTGA GAAGACGTTT AAGTATAAGG TTGGTGGCGT GGGCAGGAAT CCTGAGGATA AGTACTACGG TGGTAACCCA TGGATAATAA CAACCCTTTG GCTTGCAATA TACCATAAAC TGGCTGGTAA TGTTGATAAG GCCAATGAAT TAATAAAATG GGCTTTAACC CACAGTACTA GTACTGGTAT GCTCCCTGAG CAGGTTGATA AGGATTCAGG AAGACCCATC TCTGCAATAC CCCTGGCTTG GTCGCATGCA ATGTACATAA TGGCTGAGGT AATCAATAAT GATTTATTCA ACAAAATAAC GCCACCACTC ATTAGCAATA AGTGA
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Protein sequence | MTETVYEQSI VGNDSMLAVI GGRGELRYLF YPTKSFPQNI HSSLPGIYRR GYFSWLTDWS DIKQRYAAPG ILETVFKSGD ASVKVMDFVL HSESVLIRRF EFSIPGEFSF IYYTSPQLWE THNADAAYFD ERYGAIVDYK RGLTLVVSGD RIPNEYQIGQ LGADSDAFTD AYDGRLNMNK LSIYEGFRGV NFALLWRLRD NETLTIYFIL DKSEEAALRE LAKIKSMDCY ILSHSVAEHW EGWINKIKLN GVISEEMIKH SAYVIKMLQD SEGAFIAAPT LWPDYRYCWP RDAAYSAMAL DILGYHDEAF KFINWVVKSQ GENGAFYQRY YAEPGLKAPS WSFQIDETAS VVLATYVHFK LTLDRQFLKN AWVMVRKAAE YLAANVSDDG LTTPTVGPWE EHLGVHTYTN ASVYAALSSA SYLAGEIGDR NRAVEWGRYA SVIRSTTLNQ AWNGSFFIKI IKPRFNIPDS ATLGLVFPFN MVNVNDDRVK MNAETIEKTF KYKVGGVGRN PEDKYYGGNP WIITTLWLAI YHKLAGNVDK ANELIKWALT HSTSTGMLPE QVDKDSGRPI SAIPLAWSHA MYIMAEVINN DLFNKITPPL ISNK
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