Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Apar_0290 |
Symbol | |
ID | 8413138 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Atopobium parvulum DSM 20469 |
Kingdom | Bacteria |
Replicon accession | NC_013203 |
Strand | + |
Start bp | 334856 |
End bp | 336751 |
Gene Length | 1896 bp |
Protein Length | 631 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 645021857 |
Product | heavy metal translocating P-type ATPase |
Protein accession | YP_003179312 |
Protein GI | 257784095 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG2217] Cation transport ATPase |
TIGRFAM ID | [TIGR01494] ATPase, P-type (transporting), HAD superfamily, subfamily IC [TIGR01512] heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase [TIGR01525] heavy metal translocating P-type ATPase |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.00000372175 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 0.539461 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGCCCAA AGACAAAGGT GAAGATTGTT CGCATTGTCT GTTCTGCTGT TTTGTTAGGT GTTGCTTACG TGGTTGAACA TGTATTTAAC CTGCAGCTAT GGCAGGCGCT TTTGCTCTAT CTGTTGCCTT ATGCCGTTGC AGGATATGAT GTTGTTCTGG AGGCATGGGA GAGCATCACT GAGGGCGAGT GCTTTAACGA GGACTTGCTT ATGACCATTG CTACCCTTGG TGCTTTGTTT ATTGGTTTTG TGCCTAATGG ATCTCCTATG TTTGACGAGG CTGTCTTTGT CATGCTGTTC TTCCAGGTAG GAGAGGTATT TGAGCACCTC GCTTCCGATA ACAGCAAGAA GTCTATTGCT AAGCTTATGG ATATCCGTCC CGATAGCGCA ACGGTTGAGC GCGACGGACA GCTGCTCACT GTCTTACCAG AAGAGGTTGA GCTAGGAGAG ATTATCGTAG TAAAACCAGG TGATCGTGTT CCTGTTGATG CAGAGATTGT CGAGGGTTCT ACCAGTCTTG ATACTGTTGC TCTTACCGGT GAGAGCGTTC CTCGTGACGC GACAGTGGGA GATAATATTA TCTCGGGTTG TGTCAATCTT TCTGGCGTGG TGCGCGCTCG TGTTACCCAC CTCTTTGAAA ACTCTACAGC TACTCGCATT ATTAAGCTTG TAGAGAGTTC AAATCAAAAC AAGTCTAAGA GCGAGAGCTT TATTCGTCGT TTTTCTCGCG TCTATACCCC AGCTGTTGTT TACAGTGCTA TTGCGCTTGC GTTTTTGCCT CCTCTGTTCT CGGGTGATTT TGTAGGCAAT GCTTCTACCT GGATTGTAAG AGCGCTTACC TTCCTTATTG CGTCGTGTCC TTGTGCGCTG GTAGTTTCTG TACCACTAAC CTTCTTTGGC GGCATTGGCG CTGCTTCAAA GGAGGGTATT TTGATCAAGG GTTCTGCATA CATTGATACG CTGTCTACTC TTGATACTGT TGCATTTGAT AAGACCGGTA CGCTGACTGA GGGTGTCTTT GAGGTTCTCG CTGTTCACCC TCAAACTATT GGCGAGAAGG ACCTTCTACA CCTAGCTTCT CATGTTGAGA TGCACTCTAC ACATCCAATT GCGGCAGCTC TTCGCGCTGC CTATCCTAGT GAGGATGATG GTTGTGTTAT TACGGATATC AAGGAAATTG CAGGTCAAGG TATCTGTGCT AACGTAAATG GTAAGAGTGT TGCTGTTGGC AATTGTGCAC TCATGGAGAG CGTTGGAGCT TCTTGGAAGG CATGCAAGAA TCATGGAACC ATCATTCACG TAGCTGTTGA TGGAACCTAC ATGGGTCATA TTGTTATTTC TGACCGTGAA CGAGCTGACG CTCCAGCAGC AATCGTTTCT CTTAAAAATG TTGGCGTTTC CAAGGTTGTC ATGCTCACGG GCGATAAACG CGATGTTGCA GAAGAAATTG CAGCTCAGAT GAGTATTACC GAGGTCCGCG CAGAGCTGCT CCCACAGGAT AAGGTATCTG CAGTCGAAGG TCTTCTCGCC CAGAAGGCGG CTGGTAAGTC ACTTGCTTTT GTAGGTGACG GCATCAACGA TGCTCCTGTT CTTGCTCGTG CAGATGTTGG TGTTGCTATG GGCGTTTTAG GATCTGATGC TGCTATCGAA GCTGCTGACG TAGTGCTTAT GGATGACAAG CTCTCCAAGC TCTCAAAGGC TGTAAAGATT GCTCGTTATA CCTTGGGCAT TGCGAAGCAG AACATTGTGT TTGCTATTGG CATCAAGGTT GCTATTTTGA TTCTTGCAGC CTTTGGTTTG GCGCCTATGT GGCTGGCTGT CTTTGGAGAC ACGGGCGTTA TGGTGCTTGC AGTTCTTAAT TCCACTAGGG CTTTAAATAT TAAGTCAATT AAGTAA
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Protein sequence | MSPKTKVKIV RIVCSAVLLG VAYVVEHVFN LQLWQALLLY LLPYAVAGYD VVLEAWESIT EGECFNEDLL MTIATLGALF IGFVPNGSPM FDEAVFVMLF FQVGEVFEHL ASDNSKKSIA KLMDIRPDSA TVERDGQLLT VLPEEVELGE IIVVKPGDRV PVDAEIVEGS TSLDTVALTG ESVPRDATVG DNIISGCVNL SGVVRARVTH LFENSTATRI IKLVESSNQN KSKSESFIRR FSRVYTPAVV YSAIALAFLP PLFSGDFVGN ASTWIVRALT FLIASCPCAL VVSVPLTFFG GIGAASKEGI LIKGSAYIDT LSTLDTVAFD KTGTLTEGVF EVLAVHPQTI GEKDLLHLAS HVEMHSTHPI AAALRAAYPS EDDGCVITDI KEIAGQGICA NVNGKSVAVG NCALMESVGA SWKACKNHGT IIHVAVDGTY MGHIVISDRE RADAPAAIVS LKNVGVSKVV MLTGDKRDVA EEIAAQMSIT EVRAELLPQD KVSAVEGLLA QKAAGKSLAF VGDGINDAPV LARADVGVAM GVLGSDAAIE AADVVLMDDK LSKLSKAVKI ARYTLGIAKQ NIVFAIGIKV AILILAAFGL APMWLAVFGD TGVMVLAVLN STRALNIKSI K
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